genome.fa.s2.2.7.7.80.10.50.1000.137.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  137  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45658135--45658328	106	1.8	108	90	2	320	55	3	9	31	1.48
45661945--45662123	6	29.8	6	73	6	94	38	1	40	20	1.60
45661917--45662030	30	3.8	30	84	4	140	39	1	39	19	1.62
45661922--45662102	12	15.1	12	75	4	159	38	1	40	19	1.59
45661942--45662099	48	3.3	48	87	0	217	39	0	40	19	1.56
45661917--45662123	30	7.3	30	70	15	127	38	1	40	19	1.63
45665844--45665931	40	2.2	40	84	9	110	37	18	7	36	1.80
45666652--45666677	11	2.4	11	100	0	52	0	42	7	50	1.31
45684517--45684550	16	2.0	18	88	11	54	26	11	0	61	1.30
45685855--45685894	18	2.0	21	86	13	59	42	0	7	50	1.30
45688532--45688563	2	16.0	2	93	0	55	46	0	3	50	1.17
45690576--45690634	29	2.0	29	100	0	118	30	10	10	49	1.70
45691351--45692003	324	2.0	325	99	0	1299	29	11	18	41	1.85
45694835--45694889	23	2.4	22	80	19	60	29	1	1	67	1.11
45699659--45699746	43	2.0	43	97	0	167	42	9	22	26	1.83
45701535--45701605	18	3.9	18	83	7	99	9	43	11	35	1.74
45701538--45701618	36	2.2	36	86	0	108	11	41	7	39	1.69
45701914--45701947	1	34.0	1	100	0	68	0	0	0	100	0.00
45703245--45703291	22	2.1	23	84	7	62	38	2	2	57	1.23
45711006--45711061	23	2.5	22	85	8	69	32	1	8	57	1.40
45711702--45711736	17	2.1	17	94	0	61	31	5	14	48	1.67
45717375--45717439	32	2.2	28	78	19	71	55	4	4	35	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45718121--45718519	93	4.3	93	98	0	764	39	18	13	29	1.88
45718763--45718952	93	2.0	93	95	2	346	39	16	14	28	1.89
45732936--45733030	19	4.8	18	68	25	59	40	6	1	52	1.34
45732921--45733046	62	2.0	63	98	1	245	38	6	1	53	1.36
45741553--45741660	45	2.2	48	88	9	159	18	13	46	21	1.84
45741632--45741687	27	2.1	27	86	0	76	10	14	55	19	1.68
45741645--45741687	15	3.1	15	77	19	56	6	11	60	20	1.54
45741594--45741739	78	1.9	78	94	0	256	17	13	48	20	1.80
45745921--45745964	19	2.3	19	80	7	54	52	4	0	43	1.22
45749845--45749882	2	19.0	2	100	0	76	50	0	0	50	1.00
45752730--45752759	15	2.1	15	93	6	53	26	0	6	66	1.16
45754313--45754387	32	2.5	30	80	6	80	30	20	10	38	1.86
45759239--45759273	3	11.7	3	93	0	61	68	0	0	31	0.90
45762998--45763129	62	2.2	57	84	6	165	39	3	4	53	1.37
45771987--45772034	17	2.8	17	80	3	60	66	0	0	33	0.92
45773495--45773523	3	9.7	3	100	0	58	31	0	0	68	0.89
45776569--45776613	3	15.0	3	95	0	81	64	0	33	2	1.06
45780312--45780348	19	1.9	19	100	0	74	37	10	16	35	1.83
45781206--45781377	70	2.5	69	79	9	188	31	6	5	55	1.50
45781215--45781346	23	5.7	23	75	7	108	33	6	3	56	1.41
45781205--45781464	69	3.7	67	73	13	181	33	6	5	55	1.49
45781405--45781463	24	2.4	23	77	22	59	35	1	3	59	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45781510--45781554	23	2.0	23	90	0	72	31	6	4	57	1.44
45783052--45783087	16	2.2	16	90	0	54	63	0	36	0	0.94
45783497--45783574	40	2.0	40	84	5	104	38	2	25	33	1.70
45784668--45784694	2	13.5	2	100	0	54	48	0	0	51	1.00
45792387--45792511	44	2.8	44	80	4	137	27	20	20	31	1.98
45798033--45798063	4	7.8	4	92	0	53	25	3	48	22	1.66
45798471--45798524	24	2.2	24	80	0	63	51	14	3	29	1.60
45799935--45799974	21	1.9	21	89	0	62	35	5	22	37	1.76
45800887--45801088	44	4.6	43	65	13	117	30	24	22	22	1.99
45800887--45801088	88	2.3	88	92	0	332	30	24	22	22	1.99
45802708--45802751	3	14.7	3	100	0	88	34	0	0	65	0.93
45804770--45804794	13	1.9	13	100	0	50	88	0	0	12	0.53
45805675--45805700	11	2.4	11	100	0	52	76	7	0	15	0.99
45806566--45806591	11	2.4	11	100	0	52	76	7	0	15	0.99
45805657--45807439	891	2.0	891	99	0	3550	37	16	12	33	1.86
45807561--45807608	24	2.0	24	100	0	96	37	8	0	54	1.31
45807837--45807866	11	2.7	11	89	0	51	70	0	30	0	0.88
45807995--45808023	3	9.7	3	100	0	58	0	0	31	68	0.89
45813910--45813972	22	3.0	22	73	17	62	0	28	0	71	0.86
45813922--45814093	4	42.8	4	72	19	119	1	27	0	70	0.94
45813921--45814102	34	5.6	34	70	18	97	1	29	0	69	0.96
45813942--45814055	49	2.4	48	85	5	149	0	28	0	71	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45813915--45814092	41	4.4	42	80	13	194	1	28	0	70	0.94
45813999--45814085	30	2.8	30	82	14	106	1	28	0	70	0.95
45814135--45814204	27	2.6	27	88	4	106	18	28	27	25	1.98
45814135--45814213	27	2.9	27	81	7	97	17	30	26	25	1.97
45814277--45814324	25	2.0	24	92	8	80	50	0	8	41	1.33
45814277--45814343	25	2.6	25	83	9	73	46	1	10	41	1.47
45815325--45815367	4	10.8	4	94	0	77	25	2	48	23	1.62
45816476--45816716	118	2.0	119	99	0	475	28	10	11	49	1.72
45816711--45816735	13	1.9	13	100	0	50	32	0	0	68	0.90
45818683--45818746	24	2.8	22	81	11	74	39	1	3	56	1.25
45822351--45822389	20	2.0	20	100	0	78	41	5	0	53	1.23
45824537--45824580	22	2.0	22	86	0	61	56	2	2	38	1.24
45829740--45829791	25	2.1	24	86	10	70	19	7	13	59	1.58
45829793--45829827	19	1.9	17	88	11	52	22	5	11	60	1.52
45829793--45829833	18	2.2	19	83	12	50	24	7	9	58	1.55
45831996--45832044	21	2.2	22	86	13	66	30	0	2	67	1.02
45835200--45835282	24	3.7	22	79	16	82	39	1	2	56	1.20
45835219--45835282	20	3.0	20	82	17	76	39	1	0	59	1.07
45837098--45837123	7	3.7	7	100	0	52	0	11	0	88	0.52
45842013--45842107	43	2.2	43	94	0	163	29	28	20	22	1.98
45848514--45848558	19	2.2	20	92	7	74	24	17	6	51	1.70
45848644--45848685	19	2.3	19	87	4	68	42	11	14	30	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45848944--45848981	9	4.2	9	93	0	67	21	10	23	44	1.83
45849324--45849369	24	2.0	23	87	8	67	76	4	4	15	1.11
45850780--45850818	20	2.0	20	100	0	78	41	5	0	53	1.23
45854049--45854076	13	2.2	13	100	0	56	14	35	25	25	1.93
45855184--45855224	21	2.0	21	81	18	50	21	26	19	31	1.97
45858541--45858568	13	2.2	13	100	0	56	14	35	25	25	1.93
45859297--45859364	22	3.1	22	79	6	68	55	2	1	39	1.24
45859335--45859543	104	2.0	104	93	1	357	41	16	21	21	1.90
45861710--45861821	43	2.5	43	81	4	125	14	24	21	40	1.90
45861710--45861821	22	5.0	22	79	4	109	14	24	21	40	1.90
45868247--45868300	25	2.3	26	75	18	64	51	7	3	37	1.48
45869245--45869604	179	2.0	180	99	0	713	33	13	13	40	1.83
45870308--45870394	44	2.0	44	97	0	165	22	12	24	40	1.89
45870569--45870644	9	8.4	9	83	0	89	44	21	7	26	1.79
45870753--45870792	18	2.2	18	86	0	53	12	2	45	40	1.56
45871474--45871624	43	3.3	43	66	20	124	38	3	19	38	1.69
45871408--45871714	96	3.2	96	93	1	499	42	2	16	37	1.63
45871517--45871677	53	3.2	53	65	20	155	39	2	18	39	1.64
45873103--45873392	45	6.4	45	90	1	429	27	14	25	31	1.95
45873373--45873700	132	2.5	132	88	3	491	30	19	25	24	1.98
45874155--45874208	19	2.8	19	97	0	99	38	11	16	33	1.84
45875129--45875183	24	2.5	21	80	16	58	34	7	1	56	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45875243--45875301	24	2.4	23	77	22	59	35	1	3	59	1.24
45877533--45877576	19	2.2	20	84	8	54	31	2	0	65	1.05
45878584--45878628	23	2.0	23	86	8	65	22	2	4	71	1.15
45878611--45878635	13	1.9	13	100	0	50	32	0	0	68	0.90
45878837--45878905	29	2.4	29	87	0	93	50	26	13	10	1.72
45882962--45883068	30	3.6	30	94	0	187	24	23	26	26	2.00
45888913--45888988	23	3.3	22	73	14	64	51	3	1	43	1.28
45888912--45889003	46	2.0	47	82	6	116	54	4	1	40	1.27
45889062--45889120	17	3.5	16	79	6	55	72	3	15	8	1.21
45891923--45891967	3	15.3	3	86	4	65	60	0	0	40	0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145