genome.fa.s2.2.7.7.80.10.50.1000.108.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  108  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36348030--36348091	21	3.0	21	100	0	124	62	14	12	9	1.53
36348375--36348401	12	2.2	12	100	0	54	62	14	0	22	1.31
36352232--36352274	17	2.5	17	85	11	52	46	4	11	37	1.61
36357236--36358283	28	37.4	28	99	0	2087	10	0	42	46	1.38
36379395--36379443	26	1.9	26	83	4	64	46	10	6	36	1.63
36388664--36388787	35	3.4	35	70	18	108	36	21	19	22	1.95
36388608--36388789	75	2.5	74	88	2	276	33	22	20	23	1.97
36388619--36388746	40	3.4	38	71	18	122	35	19	19	25	1.95
36388764--36388843	34	2.3	34	78	2	88	33	25	22	18	1.97
36391274--36391334	25	2.4	26	83	8	81	19	29	18	32	1.95
36391324--36391378	25	2.2	25	78	9	60	23	20	21	34	1.97
36393899--36393959	25	2.4	26	83	8	81	19	29	18	32	1.95
36393949--36394003	25	2.2	25	78	9	60	23	20	21	34	1.97
36400917--36401387	236	2.0	230	87	3	665	30	13	23	32	1.93
36408038--36408071	6	5.5	6	86	6	50	79	0	2	17	0.86
36408424--36408500	40	1.9	40	94	0	136	20	25	18	35	1.95
36408444--36408500	20	2.8	20	69	10	62	17	24	19	38	1.93
36408909--36409013	50	2.1	51	98	1	203	23	8	23	43	1.81
36409302--36409381	42	1.9	42	89	0	124	25	21	33	20	1.97
36409305--36409398	42	2.2	42	80	0	107	23	23	30	22	1.99
36410003--36410089	45	1.9	45	83	0	111	21	22	16	39	1.92
36411924--36411966	17	2.6	16	85	10	59	23	6	4	65	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36413375--36413421	24	2.0	23	87	4	67	51	6	2	40	1.39
36413394--36413493	39	2.6	38	85	1	128	49	8	4	39	1.51
36414202--36414314	33	3.4	33	82	3	93	13	22	18	46	1.83
36414233--36414318	33	2.6	33	88	0	118	16	23	16	44	1.86
36416796--36416847	26	2.0	26	100	0	104	26	3	11	57	1.51
36417341--36417465	51	2.5	49	81	7	144	34	26	16	23	1.95
36419835--36420098	43	6.2	43	78	4	230	28	29	17	23	1.97
36423337--36423396	20	3.0	20	97	0	111	35	6	25	33	1.82
36428661--36428720	20	3.0	20	97	0	111	35	6	25	33	1.82
36431037--36431108	33	2.2	33	87	0	99	33	44	4	18	1.69
36431199--36431232	14	2.4	14	90	0	50	26	52	2	17	1.58
36432515--36432881	41	8.9	41	89	1	520	27	27	23	21	1.99
36432941--36433041	40	2.5	40	80	4	125	20	20	21	36	1.95
36432975--36433051	40	1.9	40	83	0	100	22	19	22	36	1.95
36433968--36434026	15	3.9	15	68	14	50	42	0	3	54	1.17
36438169--36438848	29	24.4	28	75	12	492	41	25	1	31	1.63
36438169--36438848	86	8.1	86	80	10	648	41	25	1	31	1.63
36438178--36438780	109	5.5	107	84	9	671	42	25	1	30	1.63
36438381--36438586	23	8.0	23	71	19	115	43	23	0	33	1.54
36438171--36438800	246	2.5	249	88	5	922	42	25	1	31	1.62
36438521--36438709	23	7.3	23	68	22	90	44	22	1	31	1.60
36439887--36439917	9	3.4	9	90	0	53	38	22	12	25	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36442680--36442723	19	2.3	19	84	7	54	40	0	4	54	1.21
36442688--36442726	19	2.1	18	90	4	60	33	0	5	61	1.18
36461537--36461722	50	3.7	50	88	0	273	27	24	30	18	1.98
36463918--36463977	12	4.9	12	76	11	50	80	0	11	8	0.92
36463926--36463963	10	3.9	10	83	16	53	81	0	13	5	0.85
36463924--36463975	18	2.8	19	91	2	79	78	0	13	7	0.94
36464993--36465025	17	1.9	17	88	11	50	33	12	27	27	1.92
36468546--36468635	45	2.0	44	93	2	153	28	13	18	38	1.89
36478113--36478150	20	1.9	19	89	5	58	60	26	13	0	1.33
36479090--36479154	4	16.0	4	75	9	51	20	4	6	69	1.28
36480310--36480354	22	2.0	22	83	8	56	46	11	6	35	1.66
36482416--36482804	198	2.0	191	95	3	706	31	20	25	23	1.98
36484311--36484350	18	2.2	18	86	8	55	37	0	2	60	1.11
36484926--36484961	14	2.6	14	95	0	63	27	22	8	41	1.82
36486943--36486979	14	2.6	14	86	4	56	54	5	0	40	1.24
36487116--36487140	9	2.8	9	100	0	50	92	0	0	8	0.40
36488649--36488760	44	2.5	44	78	2	118	33	22	16	27	1.96
36488788--36489291	267	1.9	267	91	0	830	24	25	21	28	1.99
36501615--36501738	55	2.2	56	92	1	214	54	7	3	35	1.44
36502933--36503105	86	2.0	87	94	1	303	12	18	22	46	1.83
36504068--36504136	36	1.9	36	93	0	120	27	14	10	47	1.76
36509143--36509205	17	3.6	17	76	16	65	23	12	12	50	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36509135--36509203	36	1.9	36	93	0	120	24	13	13	49	1.77
36509135--36509186	19	2.8	19	78	16	65	23	13	13	50	1.77
36512309--36512343	18	1.9	18	88	0	52	37	2	0	60	1.12
36512655--36512706	21	2.5	21	81	3	70	61	5	0	32	1.20
36513924--36513969	13	3.7	13	71	11	51	30	0	2	67	1.03
36513931--36513969	11	3.4	11	80	13	51	28	0	2	69	1.02
36532559--36532862	44	6.9	44	87	0	410	28	20	25	25	1.99
36534999--36535230	115	2.0	115	99	0	455	38	15	12	33	1.85
36538554--36538632	25	3.3	24	79	11	90	22	18	22	35	1.96
36538556--36538671	48	2.4	49	79	5	128	25	22	19	31	1.98
36539823--36539852	16	1.9	16	93	6	53	26	0	23	50	1.50
36550611--36550668	30	1.9	30	89	6	91	15	31	31	22	1.95
36553809--36553886	38	2.1	38	97	0	147	47	15	10	26	1.77
36557660--36557702	19	2.4	17	80	7	50	74	4	0	20	1.00
36558177--36558217	21	2.0	21	90	0	64	29	26	2	41	1.69
36567542--36567633	31	3.2	31	62	23	83	26	14	1	58	1.43
36567525--36567633	54	2.0	54	98	0	209	27	15	1	55	1.51
36568763--36568796	18	1.9	18	88	5	52	41	0	2	55	1.15
36569529--36569579	19	2.5	20	81	12	59	37	1	0	60	1.08
36569516--36569577	18	3.3	18	77	14	54	35	1	0	62	1.05
36569529--36569577	18	2.5	20	83	9	57	36	2	0	61	1.08
36569875--36569920	22	2.1	21	88	4	65	36	10	10	41	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36579208--36579243	18	1.9	19	88	5	56	58	13	13	13	1.64
36581478--36581512	17	2.1	17	88	0	52	42	0	0	57	0.99
36581597--36581690	27	3.5	27	97	0	170	30	24	31	12	1.93
36581760--36581803	21	2.1	21	95	0	79	29	0	11	59	1.32
36582978--36583033	28	2.0	28	82	0	67	39	7	1	51	1.40
36584896--36584989	27	3.5	27	97	0	170	31	24	31	11	1.91
36584985--36585054	19	3.6	19	90	3	104	32	1	12	52	1.48
36585293--36585357	20	3.3	20	70	12	62	55	7	16	20	1.65
36585282--36585362	39	2.1	39	92	0	135	53	6	19	20	1.67
36590956--36591020	20	3.3	20	70	12	62	55	7	16	20	1.65
36590945--36591025	39	2.1	39	92	0	135	53	6	19	20	1.67
36591395--36591428	11	3.1	11	86	0	50	0	5	5	88	0.64
36593112--36593233	60	2.0	60	85	6	167	31	0	13	53	1.46
36593345--36593386	16	2.7	15	85	7	57	38	2	2	57	1.25
36593455--36593517	21	3.0	21	85	2	81	58	14	0	26	1.36
36593551--36593588	19	1.9	19	89	5	58	57	7	0	34	1.28
36593587--36593651	27	2.4	27	92	0	103	13	30	23	32	1.93
36593714--36593756	11	3.7	11	81	6	50	67	2	0	30	1.03
36593716--36593757	10	3.5	12	81	18	52	71	2	0	26	0.98
36596950--36596989	21	2.0	21	85	5	55	12	22	12	52	1.72
36599358--36599382	6	4.2	6	100	0	50	16	0	32	52	1.44
36609626--36609824	101	2.0	102	94	1	355	30	12	15	41	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36616447--36616472	13	2.0	13	100	0	52	30	0	23	46	1.53
36618764--36618905	43	3.3	43	84	2	187	25	31	18	24	1.97
36618774--36618965	86	2.2	84	82	5	215	26	28	16	29	1.97
36618841--36619026	43	4.3	43	75	5	142	31	24	14	29	1.95
36621331--36621373	21	2.0	21	90	0	68	51	16	6	25	1.69
36621284--36621418	68	2.0	68	92	0	225	52	11	8	27	1.66
36621352--36621445	47	2.0	47	89	0	143	52	11	8	27	1.67
36621411--36621503	30	3.1	30	81	7	109	52	10	10	25	1.68
36621507--36621549	21	2.0	21	90	0	68	51	16	6	25	1.69
36621528--36621658	47	2.8	47	82	2	165	50	10	12	25	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145