genome.fa.s2.2.7.7.80.10.50.1000.100.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  100  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33398688--33398731	17	2.6	17	82	17	56	75	0	0	25	0.81
33402501--33402544	20	2.2	20	84	4	54	72	2	2	22	1.07
33407446--33407486	6	6.8	6	91	8	66	31	0	0	68	0.90
33416952--33417079	32	4.0	32	100	0	256	37	25	3	34	1.72
33421656--33421769	40	2.8	42	78	9	119	24	17	28	29	1.97
33422113--33422146	14	2.4	14	90	0	50	23	0	41	35	1.55
33422159--33422192	15	2.3	15	89	0	50	11	0	47	41	1.40
33422347--33422377	14	2.2	14	100	0	62	22	0	25	51	1.48
33422401--33422450	15	3.4	15	91	2	75	18	0	38	44	1.50
33422396--33422470	22	3.4	22	81	7	82	20	1	33	45	1.59
33422396--33422531	7	18.7	7	70	10	76	20	1	38	38	1.62
33422495--33422531	15	2.5	15	90	0	56	16	0	51	32	1.45
33422778--33422816	14	2.7	15	80	11	55	30	0	30	38	1.58
33425843--33426078	43	5.5	43	79	7	255	27	18	24	30	1.98
33436546--33436605	5	11.8	5	77	8	50	73	3	18	5	1.16
33441326--33441378	27	1.9	27	85	11	72	45	1	5	47	1.37
33441804--33441851	21	2.3	21	96	0	87	16	8	41	33	1.78
33443008--33443040	17	1.9	18	88	11	52	42	0	15	42	1.46
33449193--33449235	14	2.9	15	82	10	52	20	0	4	74	1.00
33453192--33453243	27	1.9	27	88	0	77	73	3	19	3	1.15
33463069--33463110	11	3.7	11	78	15	50	61	2	2	33	1.21
33465024--33465946	264	3.5	265	92	1	1478	29	23	18	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33465024--33465946	132	7.0	132	88	2	1343	29	23	18	29	1.98
33465024--33466074	396	2.7	394	84	4	1350	28	23	18	29	1.98
33465870--33466480	131	4.6	131	88	2	825	25	23	20	31	1.98
33468637--33468730	38	2.5	38	83	0	116	23	14	26	35	1.94
33469816--33470047	115	2.0	116	96	1	430	31	22	18	27	1.97
33476256--33476499	121	2.0	122	99	0	481	20	28	20	31	1.97
33478147--33478557	23	17.6	23	69	13	189	42	16	12	28	1.85
33478107--33478535	139	3.0	140	89	2	621	42	16	11	28	1.84
33478133--33478559	70	6.1	70	89	1	604	42	16	12	28	1.85
33478966--33479045	28	2.9	28	88	5	110	32	22	12	32	1.91
33480294--33480360	30	2.2	30	91	0	107	16	37	26	19	1.93
33481311--33481397	44	2.0	44	90	4	140	22	22	2	51	1.59
33486318--33486373	6	10.0	6	73	21	50	17	0	5	76	0.96
33486318--33486366	10	5.1	10	76	18	50	18	0	4	77	0.92
33486318--33486384	27	2.5	27	85	4	82	14	1	5	77	1.03
33486318--33486373	17	3.4	16	85	7	67	17	0	5	76	0.96
33486340--33486438	50	1.9	52	80	11	116	16	4	7	72	1.22
33493380--33493411	9	3.7	9	91	8	57	6	0	93	0	0.34
33493379--33493411	17	1.9	17	100	0	66	6	0	93	0	0.33
33514066--33514211	66	2.2	66	79	9	163	30	4	40	24	1.74
33514073--33514211	33	4.2	33	74	7	129	31	4	39	24	1.75
33523077--33523140	21	3.0	21	95	0	110	10	23	20	45	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33526193--33526218	5	5.2	5	100	0	52	0	57	0	42	0.98
33561892--33561938	18	2.6	18	86	6	60	65	0	4	29	1.11
33562323--33562362	16	2.5	17	80	19	50	37	2	0	60	1.11
33564989--33565484	263	1.9	263	88	1	753	34	9	27	28	1.89
33576554--33576578	3	8.3	3	100	0	50	68	0	32	0	0.90
33580158--33580264	33	3.2	33	82	5	135	42	18	22	15	1.88
33598731--33598759	15	1.9	15	100	0	58	44	6	0	48	1.29
33605494--33605525	14	2.1	16	88	11	50	43	21	0	34	1.53
33605525--33605567	22	2.0	21	90	4	68	23	25	6	44	1.78
33606649--33606694	21	2.2	21	84	0	56	2	21	4	71	1.14
33619998--33620035	4	9.5	4	83	11	51	26	0	26	47	1.52
33622822--33622862	20	2.2	18	87	12	57	36	2	24	36	1.69
33625720--33625771	27	1.9	27	84	7	70	32	15	5	46	1.70
33628460--33628497	20	1.9	20	88	0	58	28	0	10	60	1.30
33629465--33629507	20	2.2	20	87	8	61	39	4	11	44	1.62
33635397--33635537	72	2.0	70	97	2	264	34	7	7	51	1.57
33641235--33641288	23	2.3	24	80	6	65	62	0	1	35	1.06
33649371--33649411	20	2.0	20	85	4	55	73	7	4	14	1.22
33649383--33649427	24	1.9	23	86	4	63	71	8	4	15	1.28
33649619--33649649	8	3.8	8	91	8	53	74	0	3	22	0.96
33658598--33658645	24	2.0	24	100	0	96	37	4	4	54	1.39
33666959--33667012	10	5.6	10	72	14	51	68	0	3	27	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33666959--33667012	20	2.8	20	86	5	76	68	0	3	27	1.06
33667012--33667041	14	2.2	13	94	5	51	53	26	0	20	1.46
33683073--33683121	20	2.3	21	83	13	57	48	0	2	48	1.12
33683900--33683946	17	2.8	16	79	17	51	57	4	2	36	1.30
33683935--33684145	105	2.0	106	99	0	415	40	10	5	43	1.63
33701258--33701312	23	2.4	22	75	22	58	20	1	7	70	1.20
33712536--33712585	26	2.0	24	88	7	73	24	20	10	46	1.81
33724302--33724337	3	12.0	3	100	0	72	33	0	0	66	0.92
33724799--33724835	13	2.7	14	84	16	51	21	5	5	67	1.31
33724842--33724875	15	2.3	15	94	0	59	23	0	11	64	1.26
33725150--33725342	98	2.0	98	94	0	341	27	10	23	37	1.88
33736686--33736844	42	3.9	41	88	3	221	33	23	20	22	1.97
33736686--33736844	82	1.9	84	88	2	241	33	23	20	22	1.97
33736816--33736991	42	4.2	41	82	3	199	23	19	22	34	1.96
33736816--33736993	84	2.1	83	84	3	232	24	19	21	34	1.97
33737210--33737256	21	2.2	21	84	0	58	46	0	12	40	1.42
33738776--33738826	26	2.0	26	88	0	75	43	17	11	27	1.84
33744802--33745305	114	4.4	113	88	5	741	26	25	22	25	2.00
33744802--33745305	228	2.2	228	94	1	868	26	25	22	25	2.00
33766211--33766294	27	3.1	27	92	0	141	14	22	40	22	1.90
33766211--33766313	27	3.8	27	87	2	136	17	22	37	22	1.94
33766375--33766421	18	2.5	20	79	10	62	63	2	34	0	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33766371--33766424	22	2.4	23	84	12	76	64	1	33	0	1.04
33769889--33769939	6	8.5	6	86	0	75	3	33	25	37	1.74
33774670--33774736	27	2.5	28	76	16	79	22	11	10	55	1.66
33774858--33774890	15	2.2	15	94	0	57	72	0	27	0	0.85
33777321--33777359	21	1.9	21	89	5	62	58	10	2	28	1.44
33779194--33779245	24	2.2	24	89	0	77	53	7	3	34	1.48
33781161--33781212	24	2.2	24	89	0	77	55	9	1	32	1.43
33789951--33789998	21	2.4	19	75	6	51	50	2	4	43	1.33
33791103--33791144	11	4.0	11	75	12	52	52	23	7	16	1.68
33791157--33791459	151	2.0	151	98	0	588	26	16	18	39	1.91
33795407--33795451	18	2.5	18	82	7	56	40	17	4	37	1.70
33803097--33803145	25	2.0	24	84	15	64	44	2	0	53	1.12
33808678--33808709	12	2.7	12	95	0	55	21	18	37	21	1.94
33816354--33818502	759	2.8	754	84	4	2708	22	14	21	41	1.89
33819411--33819444	12	2.9	12	91	4	52	5	17	0	76	0.98
33818496--33823527	768	6.6	767	83	3	6142	22	14	20	41	1.89
33823922--33823956	12	2.9	12	91	0	52	0	22	0	77	0.78
33825273--33825372	41	2.4	41	94	0	173	17	23	29	31	1.96
33823791--33827470	755	4.8	762	80	8	3731	23	14	21	41	1.90
33827692--33827722	15	2.1	15	93	0	53	70	0	3	25	1.02
33829526--33829581	5	11.0	5	81	11	60	76	0	5	17	0.96
33829526--33829580	11	4.8	11	81	14	67	78	0	5	16	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33833752--33833783	16	2.0	16	93	0	55	71	6	3	18	1.20
33836032--33836066	12	2.9	12	91	0	52	0	22	0	77	0.78
33836800--33836833	12	2.8	12	90	0	50	0	23	0	76	0.79
33834950--33837432	768	3.2	766	88	1	3578	23	14	21	40	1.90
33845413--33845567	43	3.7	41	76	10	152	24	18	27	29	1.98
33845455--33845559	41	2.5	42	82	3	113	25	18	26	29	1.98
33845729--33845760	16	1.9	17	93	6	57	40	0	21	37	1.54
33848596--33848628	16	2.0	17	88	5	50	57	6	0	36	1.23
33852249--33852296	21	2.3	22	82	17	66	37	12	27	22	1.90
33853999--33854055	26	2.2	26	100	0	114	33	0	15	50	1.44

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145