genome.fa.s2.2.7.7.80.10.50.1000.140.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  140  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46454146--46454170	7	3.6	7	100	0	50	12	0	0	88	0.53
46458152--46458186	8	4.5	8	92	7	63	71	0	0	28	0.86
46460791--46460818	14	2.0	14	100	0	56	64	7	7	21	1.43
46461549--46461610	30	2.1	30	90	0	97	27	20	12	38	1.90
46463245--46463306	30	2.1	30	90	0	97	37	14	22	25	1.92
46474168--46475340	296	3.9	293	79	7	1039	39	9	13	36	1.78
46491303--46491456	44	3.4	47	74	16	128	29	17	25	27	1.97
46491344--46491456	44	2.5	44	81	4	129	28	18	23	29	1.98
46491329--46491723	180	2.2	181	86	0	558	33	16	19	30	1.94
46493592--46493678	25	3.5	25	70	25	67	28	6	2	62	1.34
46493606--46493977	26	14.8	25	70	16	191	29	6	3	59	1.40
46493601--46493977	51	7.5	48	75	12	300	29	6	3	60	1.39
46493609--46493978	77	4.9	72	73	16	247	29	7	3	60	1.40
46493868--46493939	24	3.1	23	69	16	58	29	5	1	63	1.25
46495382--46495411	2	15.0	2	92	0	51	53	0	46	0	1.00
46498817--46499013	98	2.0	98	97	0	376	31	21	21	25	1.98
46516857--46516885	2	14.5	2	100	0	58	0	51	0	48	1.00
46518218--46518251	12	2.8	12	86	0	50	64	0	17	17	1.29
46523493--46523794	45	7.0	43	81	7	326	25	16	22	35	1.95
46523503--46523839	45	7.8	42	79	8	284	24	16	23	35	1.95
46523492--46523829	85	3.9	86	84	5	373	25	15	23	35	1.94
46523503--46523823	130	2.5	132	81	8	370	25	15	23	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46526613--46526684	36	2.0	36	97	0	135	31	25	5	37	1.79
46526856--46527034	86	2.1	87	97	1	342	27	8	10	53	1.64
46528477--46528504	2	14.0	2	100	0	56	50	0	0	50	1.00
46531094--46531136	22	2.0	22	90	0	68	48	13	9	27	1.73
46534427--46534501	39	1.9	38	91	2	123	41	1	4	53	1.28
46534426--46534521	39	2.4	39	83	13	115	41	1	5	52	1.31
46558138--46558193	22	2.4	23	77	16	62	51	1	7	39	1.40
46561212--46561254	13	3.3	13	84	12	61	55	9	4	30	1.52
46561221--46561261	13	3.2	13	80	19	50	51	14	4	29	1.63
46564160--46564233	26	2.6	30	79	16	102	41	6	16	35	1.74
46564378--46564529	75	2.0	77	94	2	272	48	6	3	41	1.48
46565296--46565330	19	1.9	19	88	11	56	20	14	0	65	1.26
46571421--46571451	9	3.4	9	90	0	53	25	12	22	38	1.90
46571505--46571541	9	4.1	9	89	0	56	48	13	8	29	1.71
46572361--46572387	5	5.4	5	100	0	54	18	18	18	44	1.87
46574047--46574137	45	2.0	45	95	0	164	25	12	27	35	1.91
46577011--46577070	3	19.3	3	89	6	93	31	3	0	65	1.09
46580605--46580653	25	1.9	27	84	12	68	20	16	8	55	1.66
46593512--46593859	116	3.0	116	100	0	696	24	20	18	36	1.95
46600126--46600173	20	2.4	19	86	6	60	25	6	22	45	1.75
46600159--46600207	9	5.6	9	87	4	64	24	8	24	42	1.81
46600153--46600208	18	3.2	18	82	5	78	21	7	26	44	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46601393--46601426	7	5.0	7	92	7	61	26	0	0	73	0.83
46601946--46601991	22	2.0	22	83	4	56	15	4	4	76	1.11
46602079--46602116	13	2.8	14	80	19	53	21	5	7	65	1.38
46602123--46602156	15	2.3	15	94	0	59	17	0	17	64	1.29
46612986--46613196	116	1.8	116	85	4	300	44	20	7	27	1.78
46614194--46614231	20	1.9	20	84	10	51	42	28	5	23	1.76
46616474--46616508	16	2.1	17	94	5	63	40	0	2	57	1.14
46616746--46616786	2	20.0	2	95	5	73	48	2	0	48	1.14
46617989--46618037	22	2.2	21	82	13	55	42	8	6	42	1.59
46621063--46621110	21	2.2	23	92	7	82	4	4	18	72	1.17
46621335--46621367	15	2.1	16	88	5	50	66	0	0	33	0.92
46622133--46622201	28	2.4	29	86	11	106	68	0	1	30	0.99
46623447--46623510	31	2.1	31	100	0	128	46	9	9	34	1.68
46625876--46625908	6	5.5	6	100	0	66	48	0	18	33	1.48
46627813--46627954	3	46.7	3	71	4	79	59	3	5	31	1.38
46631096--46631127	2	16.0	2	93	0	55	46	0	3	50	1.17
46632430--46632463	15	2.4	14	90	5	50	44	8	0	47	1.34
46634362--46634452	44	2.1	44	93	0	155	26	12	9	51	1.70
46635674--46635824	41	3.7	41	80	8	173	21	17	25	35	1.95
46636539--46636828	23	12.5	23	69	9	151	26	6	20	46	1.75
46636528--46636802	69	4.0	69	87	0	361	25	7	21	45	1.78
46639102--46639162	24	2.7	20	71	24	50	29	0	6	63	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46639791--46639834	22	1.9	24	86	9	65	38	2	0	59	1.10
46640727--46640770	23	1.9	23	90	9	72	40	22	4	31	1.74
46652292--46652335	16	2.7	15	83	13	52	56	4	4	34	1.40
46654081--46654235	33	4.8	33	91	3	251	36	7	12	43	1.69
46654351--46654439	31	2.7	34	72	11	87	37	5	13	43	1.68
46654147--46654596	205	2.2	205	92	1	744	30	9	15	44	1.78
46654541--46654606	31	2.1	32	88	8	100	37	3	15	43	1.62
46654377--46654746	172	2.2	172	87	3	516	28	10	17	43	1.82
46660238--46660545	153	2.0	158	84	3	410	25	14	25	35	1.93
46667832--46667870	14	2.7	14	88	4	60	43	12	12	30	1.81
46669826--46669961	71	1.9	70	87	1	200	38	11	20	30	1.87
46669915--46670073	83	1.9	84	82	1	203	40	8	20	31	1.81
46670225--46670492	109	2.5	109	87	1	378	29	13	15	42	1.84
46670427--46670565	72	1.9	73	86	1	199	23	12	15	47	1.81
46670669--46670724	26	2.2	26	100	0	112	51	7	14	26	1.67
46687486--46687642	80	1.9	82	90	2	255	40	10	11	38	1.75
46692158--46692197	19	2.0	21	90	9	66	57	5	0	37	1.21
46695547--46696430	442	2.0	442	99	0	1759	39	5	11	43	1.65
46696925--46696978	20	2.8	20	82	2	65	25	5	0	68	1.11
46696943--46697016	19	3.9	18	77	11	60	32	4	1	62	1.22
46696925--46697080	10	16.3	9	68	22	54	29	6	1	62	1.31
46698832--46698872	19	2.1	20	90	4	66	41	31	4	21	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46700304--46700334	2	15.5	2	93	0	53	45	0	3	51	1.17
46701441--46701506	30	2.4	25	79	20	69	53	7	10	28	1.63
46702091--46702149	29	2.0	29	100	0	118	37	16	13	32	1.88
46710770--46710799	15	1.9	16	93	6	53	66	10	0	23	1.21
46714507--46714698	95	2.0	95	88	2	289	22	15	18	43	1.87
46716913--46716964	19	2.7	19	87	0	77	21	7	21	50	1.73
46718958--46719066	56	1.9	56	90	0	173	45	15	5	33	1.69
46720341--46720400	31	2.0	29	87	6	84	50	6	5	38	1.51
46728964--46729030	4	16.8	4	100	0	134	25	0	23	50	1.49
46728989--46729625	213	3.0	217	90	2	996	36	18	16	29	1.93
46730523--46730552	13	2.2	13	94	5	51	86	0	13	0	0.57
46740483--46740543	29	2.2	29	82	5	72	67	3	3	26	1.22
46746593--46747101	117	4.3	118	82	3	546	24	9	28	37	1.87
46757070--46757138	27	2.5	27	88	2	93	31	1	0	66	1.00
46757090--46757148	27	2.2	27	81	3	66	27	1	5	66	1.22
46767217--46767258	20	2.2	19	87	12	59	11	4	0	83	0.79
46772667--46772715	21	2.5	20	80	6	55	44	14	2	38	1.56
46774102--46774131	13	2.4	13	94	5	53	33	13	10	43	1.77
46777269--46777309	8	4.8	9	84	3	50	63	0	2	34	1.08
46777269--46777309	3	14.3	3	80	10	50	63	0	2	34	1.08
46779196--46779242	11	4.3	11	86	7	69	42	4	0	53	1.20
46779196--46779237	11	3.7	12	90	9	70	45	4	0	50	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46783053--46783114	27	2.2	28	82	5	72	53	0	6	40	1.27
46783587--46783634	20	2.5	19	83	12	62	43	0	4	52	1.20
46783582--46783640	19	3.1	19	77	13	68	49	0	3	47	1.18
46786596--46786630	18	1.9	18	94	0	61	5	8	11	74	1.22
46788647--46788787	70	2.0	71	95	1	257	31	5	11	51	1.61
46793337--46793446	58	1.9	58	84	0	148	24	16	10	48	1.78
46796380--46796407	2	14.0	2	100	0	56	50	0	0	50	1.00
46798570--46798678	38	2.8	38	81	1	128	24	13	10	51	1.72
46817315--46817494	88	2.0	89	98	1	353	41	5	10	43	1.61
46817877--46817979	51	2.0	51	98	0	197	30	32	15	22	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145