genome.fa.s2.2.7.7.80.10.50.1000.111.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  111  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37256075--37256327	94	2.7	94	95	0	443	43	3	11	41	1.58
37256596--37256652	10	5.5	10	79	8	60	33	26	8	31	1.87
37256603--37256652	21	2.4	21	100	0	100	34	28	10	28	1.89
37257430--37257464	18	1.9	18	94	0	61	37	20	31	11	1.88
37258672--37258716	21	2.1	21	83	0	54	48	35	2	13	1.54
37258684--37258746	7	9.0	7	76	0	54	44	36	1	17	1.59
37258684--37258729	21	2.2	21	88	0	65	47	34	2	15	1.57
37259555--37260027	227	2.1	229	80	5	523	24	19	20	34	1.96
37259631--37260076	114	3.9	114	86	2	601	24	19	19	36	1.95
37259619--37260116	114	4.4	113	84	4	599	23	19	19	36	1.95
37261562--37261587	13	2.0	13	100	0	52	46	15	7	30	1.74
37263515--37263863	43	8.2	42	83	4	378	26	30	19	24	1.98
37263515--37263863	86	4.1	86	84	2	427	26	30	19	24	1.98
37263515--37263849	129	2.6	127	85	4	424	25	29	19	25	1.98
37265807--37265853	8	5.4	8	85	14	58	68	17	2	12	1.31
37265807--37265853	17	2.6	17	93	6	76	68	17	2	12	1.31
37266399--37266453	12	4.7	12	77	20	62	45	7	0	47	1.30
37266390--37266478	35	2.6	36	75	10	105	42	5	1	50	1.33
37266414--37266534	58	2.1	58	84	3	154	41	6	3	48	1.45
37266772--37266809	15	2.6	15	84	16	53	36	34	0	28	1.58
37266772--37266810	14	2.7	14	88	11	53	35	35	0	28	1.58
37267065--37267127	14	4.4	14	80	7	65	31	44	3	20	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37267075--37267150	22	3.5	22	76	3	66	35	40	2	21	1.67
37267150--37267191	14	2.9	14	89	6	66	35	38	0	26	1.57
37267146--37267192	15	3.3	15	88	8	71	40	34	0	25	1.56
37267538--37267736	41	4.9	41	91	1	310	28	28	21	21	1.98
37267729--37267815	43	2.0	43	95	0	156	29	20	27	21	1.98
37267830--37267944	40	2.9	39	84	3	149	22	24	20	33	1.97
37267954--37267978	12	2.1	12	100	0	50	32	36	24	8	1.84
37268690--37268748	28	2.1	29	84	6	77	59	0	0	40	0.97
37269315--37269389	30	2.5	29	76	8	71	42	1	14	41	1.54
37273334--37273498	82	2.0	83	98	1	323	47	7	3	41	1.49
37275939--37276002	27	2.4	27	86	0	83	18	20	26	34	1.96
37290854--37290891	15	2.5	15	84	12	51	50	0	0	50	1.00
37294024--37294056	13	2.4	14	90	5	50	72	3	0	24	0.98
37295075--37295148	34	2.2	34	85	7	107	33	2	14	48	1.58
37295294--37295320	6	4.5	6	100	0	54	48	0	0	51	1.00
37296475--37296548	34	2.2	34	85	7	107	33	2	14	48	1.58
37296694--37296720	6	4.5	6	100	0	54	48	0	0	51	1.00
37309450--37309524	38	2.0	38	94	0	132	36	17	2	44	1.63
37310261--37310290	2	15.0	2	100	0	60	50	0	0	50	1.00
37314944--37315131	37	5.2	35	68	18	102	29	22	11	36	1.89
37314895--37315123	108	2.1	108	83	1	289	31	20	11	36	1.88
37315266--37315357	36	2.6	36	87	0	130	35	10	13	40	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37315018--37315316	135	2.2	135	84	1	393	32	19	10	36	1.87
37315933--37316518	293	2.0	293	99	0	1156	35	17	13	33	1.89
37321218--37321664	114	3.9	112	76	9	413	31	18	23	26	1.97
37322118--37322155	20	1.9	20	89	10	60	47	2	0	50	1.15
37322947--37323014	7	9.9	7	79	7	59	5	0	45	48	1.26
37322947--37323000	14	3.9	14	87	4	83	5	0	48	46	1.25
37322946--37322996	20	2.5	20	93	3	84	5	0	50	43	1.26
37322947--37323015	27	2.5	27	90	2	111	7	0	44	47	1.30
37323512--37323792	147	1.9	147	79	5	318	25	13	24	35	1.93
37325319--37325351	16	2.1	16	94	0	57	27	12	9	51	1.69
37335738--37335941	42	4.9	42	95	0	372	22	19	25	33	1.97
37337018--37337078	29	2.1	29	82	11	72	44	13	13	29	1.81
37343724--37344065	64	5.2	64	62	18	157	33	16	12	38	1.85
37343650--37344128	131	3.7	131	86	0	636	32	15	13	38	1.87
37362408--37362466	25	2.4	24	83	10	75	30	1	3	64	1.20
37365585--37365619	18	1.9	18	88	11	54	45	0	2	51	1.16
37368044--37368094	20	2.4	21	83	6	59	5	25	3	64	1.33
37375402--37375435	4	8.0	4	93	6	50	23	0	0	76	0.79
37379736--37379773	17	2.3	16	83	16	51	68	0	2	28	1.03
37379706--37379817	54	2.0	56	83	8	140	60	2	7	29	1.37
37380011--37380069	29	2.0	29	87	6	84	32	3	3	61	1.29
37380011--37380083	29	2.4	29	82	13	78	31	4	2	61	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37396383--37396508	54	2.3	54	80	2	137	17	30	23	28	1.97
37409478--37409509	15	2.2	15	94	5	57	65	0	3	31	1.08
37423333--37423418	43	2.0	42	84	2	109	31	17	20	30	1.96
37428282--37428306	13	1.9	13	100	0	50	32	4	8	56	1.47
37428405--37428703	50	5.8	50	87	2	391	25	22	30	21	1.99
37441556--37441586	5	6.2	5	100	0	62	0	19	61	19	1.35
37443101--37443133	16	2.1	16	100	0	66	36	6	36	21	1.78
37443113--37443202	45	2.0	45	89	6	139	28	5	27	37	1.79
37443113--37443221	45	2.6	43	80	12	129	32	6	27	33	1.82
37446460--37446615	77	2.0	78	96	3	289	44	7	5	42	1.55
37447361--37447412	24	2.2	24	86	6	70	30	5	7	55	1.52
37449021--37449069	24	2.0	24	92	0	80	34	2	8	55	1.41
37455272--37455427	69	2.3	69	95	2	278	39	11	22	26	1.88
37461734--37461778	22	2.0	22	95	0	81	37	15	8	37	1.79
37471911--37471995	40	2.2	40	82	2	100	64	9	2	23	1.35
37471974--37472034	17	3.5	17	73	8	59	67	1	3	27	1.16
37473533--37473564	15	2.2	15	94	5	57	65	0	3	31	1.08
37476900--37477029	21	6.2	21	70	0	89	42	17	23	16	1.89
37476883--37476985	42	2.5	42	90	0	152	41	18	25	14	1.88
37476898--37477029	63	2.1	63	81	0	147	41	17	24	16	1.89
37483879--37483915	19	1.9	19	89	10	58	54	10	0	35	1.36
37484526--37484618	43	2.2	43	92	0	150	39	0	12	47	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37484547--37484619	20	3.4	22	75	17	89	36	0	13	49	1.43
37484686--37484732	21	2.2	21	88	3	67	63	10	0	25	1.26
37485215--37485244	13	2.3	13	100	0	60	36	36	0	26	1.57
37493505--37493536	3	10.7	3	100	0	64	68	0	0	31	0.90
37494720--37495147	44	9.7	43	63	12	111	28	24	17	29	1.98
37494720--37495263	132	4.1	132	94	0	917	29	24	17	29	1.97
37497871--37497930	23	2.6	22	75	15	59	70	10	16	3	1.29
37498456--37498517	17	3.5	17	76	10	70	12	3	37	46	1.58
37498439--37498511	36	2.0	36	100	0	146	16	2	36	43	1.62
37499429--37499501	31	2.4	31	90	0	110	20	12	39	27	1.88
37502625--37502686	30	2.1	30	85	11	83	20	51	0	27	1.48
37502784--37502843	30	2.0	31	86	3	86	20	40	0	40	1.52
37508411--37508441	15	2.1	14	94	5	53	61	19	3	16	1.48
37508510--37508576	33	2.0	33	88	0	98	53	17	7	20	1.68
37511585--37511665	27	3.0	27	79	13	94	48	1	9	40	1.44
37511585--37511666	29	3.0	29	77	10	91	48	1	9	40	1.44
37513491--37513672	50	3.6	50	87	2	240	29	25	15	29	1.96
37513487--37513672	101	1.9	100	86	3	266	29	25	16	28	1.96
37519452--37519495	23	1.9	24	90	9	74	38	2	22	36	1.67
37538480--37538549	20	3.5	20	84	5	79	30	11	14	44	1.80
37540522--37540582	28	2.1	29	85	8	81	45	0	13	40	1.43
37540546--37540664	33	3.6	32	78	12	123	42	0	15	42	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37540539--37540664	66	1.9	66	87	4	175	44	0	14	41	1.45
37540707--37541214	127	4.1	125	80	7	518	38	16	16	28	1.90
37540973--37541206	117	2.0	117	89	3	355	38	17	15	27	1.91
37544804--37544855	25	2.1	24	82	10	61	69	1	1	26	1.10
37561268--37561306	20	2.0	20	85	10	53	51	0	12	35	1.40
37569423--37569485	31	2.0	32	96	3	119	31	9	15	42	1.79
37569849--37570161	155	2.0	156	98	0	610	36	10	10	41	1.75
37575112--37575524	205	2.0	207	99	0	812	42	9	8	39	1.69
37575492--37575517	6	4.3	6	100	0	52	50	0	0	50	1.00
37576293--37576318	7	3.7	7	100	0	52	11	0	30	57	1.34

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145