genome.fa.s2.2.7.7.80.10.50.1000.42.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  42  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13455251--13455317	31	2.2	31	83	0	80	47	14	14	22	1.81
13456494--13456556	25	2.6	24	78	16	67	47	0	1	50	1.10
13463055--13463115	3	20.3	3	100	0	122	0	32	0	67	0.91
13470075--13470113	2	19.5	2	100	0	78	48	0	0	51	1.00
13472687--13473295	262	2.3	266	84	4	772	38	11	13	36	1.80
13475721--13475790	15	4.4	17	75	10	58	67	0	2	30	1.05
13475735--13475794	30	1.9	30	83	6	75	68	0	3	28	1.05
13476908--13476951	20	2.2	21	88	8	65	22	0	2	75	0.92
13476910--13477068	9	16.6	10	67	13	68	28	3	3	65	1.23
13476940--13477068	28	4.5	29	78	8	122	29	3	3	63	1.27
13476910--13477068	19	8.3	19	69	14	94	28	3	3	65	1.23
13477834--13477932	34	2.9	33	86	5	144	37	1	19	42	1.58
13478404--13478551	9	15.4	9	68	13	55	31	4	2	62	1.25
13485871--13485989	28	4.2	29	75	11	113	52	5	20	21	1.66
13485919--13486013	28	3.4	28	79	2	111	52	7	21	18	1.69
13485871--13486007	56	2.4	56	85	6	170	53	6	18	21	1.67
13488121--13488176	26	2.1	27	87	6	80	44	10	8	35	1.71
13488367--13488437	26	2.8	25	74	4	70	18	22	19	39	1.92
13488415--13488462	23	2.1	23	88	0	69	18	25	20	35	1.95
13498607--13498650	21	2.0	23	82	8	56	68	4	2	25	1.20
13500101--13500137	18	2.1	18	94	0	65	56	13	10	18	1.66
13506405--13506466	25	2.5	25	94	5	108	30	8	19	41	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13506673--13506737	32	2.2	29	86	10	87	44	12	6	36	1.67
13506854--13506919	32	2.0	33	94	2	116	46	10	9	33	1.70
13506984--13507100	56	2.1	56	96	0	216	45	6	11	35	1.68
13507206--13507309	49	2.1	49	85	0	136	30	8	10	50	1.67
13509643--13509683	22	1.9	22	85	5	57	56	4	7	31	1.48
13515502--13515588	40	2.2	40	97	0	165	28	8	16	47	1.75
13517346--13517417	32	2.2	32	95	4	128	37	19	4	38	1.71
13518863--13518899	9	4.1	9	89	0	56	48	13	8	29	1.71
13521941--13521997	29	2.0	29	86	6	80	29	17	19	33	1.95
13525807--13526577	50	15.4	50	69	4	417	24	18	23	33	1.97
13525723--13526610	100	8.9	100	86	3	1052	25	19	22	32	1.97
13529954--13530010	25	2.3	23	78	18	62	45	0	3	50	1.18
13530431--13530827	127	3.2	126	86	3	539	29	16	16	37	1.91
13530884--13531014	34	3.8	33	78	9	122	43	14	2	39	1.58
13530874--13531014	68	2.0	70	80	9	155	43	13	2	41	1.56
13531041--13531119	42	1.9	42	94	2	142	43	30	2	24	1.67
13534611--13534649	15	2.6	15	87	0	51	12	0	33	53	1.39
13534629--13534707	42	1.9	41	92	2	131	25	1	27	45	1.61
13534735--13534816	34	2.4	34	84	8	96	41	0	17	41	1.49
13534761--13534826	34	1.9	34	90	0	105	40	0	12	46	1.41
13537579--13537633	27	2.0	27	96	0	101	25	12	38	23	1.90
13538685--13538726	18	2.3	18	87	0	57	42	7	26	23	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13540473--13540531	30	2.0	30	89	0	91	38	3	25	32	1.72
13544163--13544244	39	2.1	39	93	0	137	26	17	13	42	1.86
13552307--13552341	17	2.1	17	89	10	54	45	2	0	51	1.16
13554193--13554296	43	2.4	43	93	0	172	50	2	23	23	1.62
13554218--13554309	43	2.1	43	83	0	112	48	3	20	27	1.65
13557452--13557479	12	2.3	12	100	0	56	35	25	10	28	1.89
13559525--13559750	123	1.8	123	90	0	362	24	26	12	35	1.92
13562528--13562662	69	2.0	69	90	0	216	47	20	15	17	1.83
13564111--13564275	42	4.2	38	64	18	86	49	3	3	43	1.35
13564107--13564297	60	3.1	64	69	23	208	51	3	3	41	1.35
13564094--13564340	121	2.0	122	99	0	487	51	3	3	42	1.34
13564092--13564265	41	4.3	39	65	18	106	50	4	2	43	1.36
13564129--13564332	60	3.4	63	71	20	218	50	1	3	43	1.30
13564941--13564985	22	2.2	21	88	11	67	71	0	11	17	1.14
13564940--13564987	20	2.3	23	82	17	68	70	0	10	18	1.15
13579670--13579699	12	2.6	12	94	5	53	36	6	13	43	1.70
13580827--13580882	27	2.0	28	86	10	80	5	23	0	71	1.06
13606352--13606388	9	4.1	9	92	0	65	45	13	10	29	1.77
13621377--13621614	49	4.8	49	82	8	275	23	8	13	53	1.67
13622614--13622774	75	2.1	75	78	2	171	35	17	22	24	1.95
13622769--13623156	114	3.4	112	72	13	331	28	19	25	26	1.99
13622883--13623373	115	4.3	114	73	8	406	29	19	22	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13622765--13623278	229	2.2	229	91	2	836	29	19	23	27	1.98
13622825--13623199	115	3.3	113	73	9	382	28	18	24	28	1.98
13624437--13624503	33	2.0	33	97	0	125	37	7	22	32	1.82
13624818--13624911	44	2.1	44	82	3	109	21	32	9	36	1.86
13626971--13627060	21	4.3	21	86	0	108	37	20	40	2	1.65
13627045--13627096	12	4.3	12	87	0	68	42	11	38	7	1.70
13627045--13627096	24	2.2	24	92	0	86	42	11	38	7	1.70
13627533--13627762	42	5.5	41	80	10	207	26	23	20	29	1.99
13627532--13627800	43	6.4	42	80	7	237	25	23	20	30	1.99
13633128--13633374	73	3.4	73	91	4	374	25	23	25	24	2.00
13633274--13633508	114	2.1	113	86	4	321	23	22	27	26	2.00
13634707--13635018	105	2.9	104	78	10	317	48	12	13	25	1.78
13634920--13634958	17	2.3	17	90	0	60	64	20	12	2	1.40
13634967--13635074	55	2.0	55	96	0	198	32	12	19	36	1.88
13639055--13639282	43	5.3	43	91	1	323	25	18	28	28	1.98
13640642--13640671	9	3.3	9	90	0	51	53	3	0	43	1.17
13642872--13642922	3	17.0	3	100	0	102	33	0	0	66	0.92
13646787--13646815	15	1.9	15	100	0	58	48	17	20	13	1.81
13648513--13648600	43	2.0	43	100	0	176	42	20	12	25	1.87
13649548--13649579	16	2.0	16	93	0	55	59	6	0	34	1.23
13652397--13652455	24	2.5	24	72	10	59	64	11	3	20	1.41
13652518--13652559	19	2.2	19	95	0	75	16	26	30	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13653435--13653487	25	2.1	25	96	0	97	39	24	16	18	1.91
13653615--13653650	18	2.0	18	100	0	72	27	27	16	27	1.97
13657141--13657185	22	2.0	22	95	0	81	37	24	13	24	1.91
13657608--13657639	16	2.0	16	93	0	55	59	9	0	31	1.29
13660077--13660160	42	2.0	42	100	0	168	28	19	28	23	1.98
13667319--13667372	19	2.8	19	91	0	90	37	11	16	35	1.84
13668493--13668689	98	2.0	98	93	0	340	29	9	23	38	1.86
13670513--13670567	24	2.2	25	83	6	67	61	10	9	18	1.54
13678969--13678998	16	1.9	16	93	6	53	33	0	20	46	1.51
13682831--13683868	50	20.7	50	85	2	1321	30	22	15	31	1.95
13682835--13683767	100	9.3	100	97	0	1663	29	22	16	31	1.95
13686574--13686650	26	3.1	23	79	20	77	44	2	2	50	1.29
13688523--13688553	6	5.2	6	100	0	62	32	32	16	19	1.94
13700998--13701073	5	15.2	5	100	0	152	19	60	19	0	1.36
13711936--13711975	15	2.8	14	85	7	53	70	2	2	25	1.13
13712407--13712465	28	2.0	30	81	15	70	45	1	22	30	1.62
13712878--13713019	40	3.6	39	80	4	167	23	29	14	31	1.95
13725225--13725270	24	2.0	23	91	8	76	65	8	0	26	1.21
13725356--13726715	679	2.0	679	99	0	2704	37	11	12	38	1.79
13729250--13729308	30	1.9	30	83	10	75	44	6	5	44	1.52
13731967--13732028	23	2.8	22	75	2	61	22	0	1	75	0.88
13732000--13732030	8	3.9	8	100	0	62	12	0	0	87	0.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13732002--13732037	16	2.2	16	90	0	54	13	0	2	83	0.76
13731972--13732054	39	2.1	39	84	4	105	20	0	3	75	0.94
13733727--13733788	27	2.2	28	85	2	90	40	0	22	37	1.54
13733962--13734261	156	1.9	157	86	5	430	35	12	20	32	1.89
13734542--13734585	22	2.0	23	81	4	54	40	9	9	40	1.68
13736175--13736331	43	3.7	43	89	2	237	24	29	17	28	1.97
13736447--13736933	243	2.0	243	100	0	974	40	15	12	32	1.84
13736925--13736995	21	3.4	21	88	0	106	4	46	18	30	1.68
13752923--13752971	21	2.3	22	79	10	57	36	44	0	18	1.50
13752923--13752971	15	3.4	14	81	15	64	36	44	0	18	1.50

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145