genome.fa.s2.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  18  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5721287--5721389	52	2.0	52	94	0	179	30	32	1	35	1.69
5721338--5721379	22	1.9	22	95	0	75	28	33	2	35	1.70
5721422--5721488	32	2.2	31	89	5	100	31	1	0	67	1.00
5721579--5721612	15	2.3	15	90	5	52	26	0	5	67	1.13
5724117--5724532	109	3.7	109	75	13	294	40	23	2	34	1.68
5724213--5724257	23	2.0	23	86	4	65	46	15	2	35	1.58
5724088--5724482	138	2.9	135	85	4	488	40	23	2	33	1.66
5724312--5724395	23	3.4	23	81	15	105	44	23	2	29	1.66
5724056--5724532	29	16.9	28	77	11	368	39	23	2	33	1.68
5729348--5729438	22	4.0	22	72	25	66	50	1	4	43	1.29
5730291--5730329	2	20.0	2	89	5	62	48	0	2	48	1.15
5734671--5735565	447	2.0	448	99	0	1783	40	15	10	33	1.81
5735541--5735565	7	3.6	7	100	0	50	84	0	0	16	0.63
5735549--5735592	22	2.0	22	86	0	61	61	2	0	36	1.09
5736246--5736277	17	1.9	16	93	6	55	6	21	0	71	1.07
5736374--5736413	17	2.4	17	87	8	55	65	0	0	35	0.93
5743094--5743261	89	1.9	89	80	7	198	22	24	19	33	1.97
5742998--5743274	148	1.9	148	79	6	319	23	22	18	34	1.96
5745792--5745830	17	2.3	17	86	8	53	30	0	20	48	1.50
5747702--5747842	40	3.6	39	76	10	135	33	24	17	25	1.96
5750341--5750368	3	9.3	3	100	0	56	32	35	0	32	1.58
5750736--5750765	9	3.2	9	95	4	51	56	0	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5750947--5750972	2	13.0	2	100	0	52	50	50	0	0	1.00
5753520--5753563	3	14.7	3	100	0	88	68	0	0	31	0.90
5760021--5760085	29	2.5	25	75	22	62	47	6	0	46	1.27
5762097--5762135	4	9.8	4	100	0	78	25	0	25	48	1.51
5767162--5767250	43	2.1	43	97	0	169	31	15	13	39	1.86
5767446--5767483	18	2.2	18	85	4	51	50	15	7	26	1.72
5767563--5767671	55	2.1	51	89	6	164	41	3	11	43	1.59
5775519--5775559	21	2.0	21	90	0	64	31	0	0	68	0.90
5781498--5781615	1	118.0	1	89	0	182	0	1	3	94	0.34
5781524--5781628	51	2.1	51	85	7	142	1	3	7	86	0.75
5783288--5783338	20	2.5	20	80	0	57	17	3	1	76	1.03
5785767--5785825	31	1.9	31	83	13	77	50	1	0	47	1.11
5785764--5785824	24	2.6	25	73	21	60	52	1	0	45	1.10
5787323--5787361	18	2.1	19	85	4	53	56	2	0	41	1.13
5789352--5789396	24	1.9	23	95	4	81	26	0	4	68	1.08
5796257--5796317	31	2.0	30	81	15	72	59	1	16	22	1.46
5796741--5796787	25	1.9	25	86	4	69	14	25	21	38	1.92
5796970--5797058	24	3.6	25	83	8	121	19	29	17	33	1.95
5796871--5797058	24	7.5	24	72	17	118	18	27	20	34	1.95
5796963--5797073	24	4.6	24	78	12	120	17	27	21	33	1.96
5798502--5798575	27	2.7	27	77	4	69	31	27	16	25	1.96
5806953--5807026	35	2.2	35	81	16	93	47	8	5	39	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5812245--5812298	11	4.9	11	85	14	67	25	31	0	42	1.55
5812342--5812372	13	2.5	12	90	10	53	19	0	3	77	0.90
5817547--5817577	15	2.1	15	93	0	53	67	6	6	19	1.35
5820516--5820573	30	1.9	30	92	0	98	27	34	22	15	1.94
5820521--5820589	30	2.3	30	80	5	77	28	34	17	18	1.94
5830832--5830884	25	2.2	24	89	3	79	35	22	24	16	1.95
5831388--5831567	45	4.0	45	98	1	353	37	20	8	33	1.83
5831388--5831567	89	2.0	90	98	1	353	37	20	8	33	1.83
5832765--5832798	11	3.0	11	91	4	50	79	0	0	20	0.73
5832765--5832796	6	5.2	6	96	3	55	81	0	0	18	0.70
5832852--5832963	56	2.0	56	98	0	215	41	5	15	37	1.70
5832965--5833039	37	2.0	37	97	0	141	32	5	16	46	1.69
5832970--5833030	17	3.4	17	68	12	50	29	3	14	52	1.58
5833046--5833078	9	3.7	9	84	15	50	27	12	18	42	1.85
5834163--5834203	20	2.0	20	85	0	55	43	0	4	51	1.23
5837497--5837585	3	29.7	3	88	0	106	42	33	23	0	1.54
5837488--5837623	15	9.1	15	88	0	164	47	33	18	0	1.49
5837488--5837621	9	14.6	9	81	4	106	48	33	17	0	1.48
5837560--5837618	3	19.7	3	89	0	64	55	33	10	0	1.33
5837614--5837656	12	3.6	12	77	0	50	27	44	25	2	1.66
5838393--5838439	14	3.4	14	83	16	71	17	17	8	57	1.63
5839393--5839422	6	5.2	6	96	4	53	50	30	20	0	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5848482--5848562	40	2.0	40	95	0	144	35	13	17	33	1.89
5854619--5855317	363	1.9	363	91	0	1157	37	20	13	29	1.90
5855775--5855864	24	3.8	24	79	16	89	31	22	26	20	1.98
5867915--5867992	32	2.6	31	80	9	90	56	1	3	38	1.26
5867934--5868015	31	2.6	31	84	5	94	51	3	4	40	1.41
5867970--5868046	31	2.5	31	81	8	77	51	5	3	38	1.42
5870531--5870609	31	2.5	31	85	4	97	25	11	16	46	1.80
5876197--5876231	6	5.8	6	93	0	61	80	0	2	17	0.84
5883718--5883777	5	12.2	5	82	10	79	61	1	0	36	1.06
5884475--5884618	25	5.8	25	76	8	93	18	26	21	33	1.97
5884492--5884618	25	5.2	23	75	12	94	17	25	22	34	1.95
5884475--5884618	49	2.9	48	84	4	162	18	26	21	33	1.97
5884525--5884624	25	4.1	25	79	8	98	21	25	23	31	1.98
5891815--5892047	13	18.1	13	75	11	185	51	8	6	34	1.56
5891807--5891876	35	2.0	35	94	0	122	47	8	5	38	1.58
5891915--5892031	40	2.9	40	92	0	180	53	8	2	35	1.45
5891895--5892047	53	2.9	53	87	2	218	54	8	3	33	1.47
5891895--5892067	53	3.3	52	81	11	201	52	8	3	35	1.49
5892873--5892942	35	2.0	35	88	0	104	48	7	4	40	1.50
5897137--5897369	13	18.1	13	75	8	181	51	8	5	34	1.55
5897129--5897198	35	2.0	35	94	0	122	47	8	5	38	1.58
5897237--5897353	40	2.9	40	92	0	180	53	8	2	35	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5897217--5897369	53	2.9	53	87	2	218	54	8	3	33	1.47
5897217--5897389	53	3.3	52	81	11	201	52	8	3	35	1.49
5904244--5904318	37	2.0	38	97	2	143	32	28	16	24	1.96
5911444--5911478	17	2.1	16	89	5	52	31	17	0	51	1.45
5911769--5911927	79	2.0	79	97	0	300	38	7	5	48	1.55
5919235--5919391	80	2.0	79	96	1	287	38	17	18	26	1.92
5919421--5919468	12	4.0	12	78	7	53	64	0	0	35	0.94
5919455--5919523	26	2.7	27	82	10	74	68	4	4	23	1.26
5922496--5922527	3	10.7	3	100	0	64	68	0	0	31	0.90
5923538--5923631	47	2.0	47	97	0	179	32	18	12	36	1.88
5927764--5928100	82	4.1	82	99	0	656	40	13	16	29	1.87
5942869--5942912	1	44.0	1	95	0	79	2	0	0	97	0.16
5947109--5947173	30	2.2	30	86	5	87	35	1	6	56	1.33
5948179--5948210	3	10.7	3	100	0	64	34	0	0	65	0.93
5948385--5948427	20	2.2	19	87	4	59	23	6	4	65	1.37
5956257--5956337	25	3.2	25	87	3	110	17	27	20	34	1.95
5957159--5957235	38	2.0	39	94	2	138	50	28	2	18	1.60
5957370--5957435	17	3.7	17	69	11	60	34	3	13	48	1.58
5957367--5957441	37	2.0	37	92	0	105	37	4	13	45	1.62
5957448--5957488	9	4.6	9	90	0	64	29	7	17	46	1.74
5959787--5959866	24	3.2	24	77	7	72	40	17	22	20	1.92
5974476--5974544	31	2.2	31	86	0	93	46	10	7	36	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5975118--5975154	13	2.9	13	85	14	51	67	0	0	32	0.91
5975245--5975279	13	2.7	13	95	0	61	42	28	17	11	1.83
5976739--5976874	40	3.5	40	75	7	125	34	22	16	26	1.95
5976739--5976874	41	3.5	40	74	7	134	34	22	16	26	1.95
5980451--5980486	18	1.9	19	88	5	56	33	22	0	44	1.53
5981193--5981226	6	5.7	6	100	0	68	50	0	0	50	1.00
5981296--5981330	18	1.9	18	88	0	52	45	0	0	54	0.99
5982269--5982326	22	2.6	22	73	15	57	67	5	3	24	1.27
5986298--5986327	15	2.0	15	100	0	60	66	0	0	33	0.92
5989837--5989920	42	2.0	43	90	2	134	57	4	1	36	1.28

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145