genome.fa.s2.2.7.7.80.10.50.1000.94.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  94  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31446674--31446712	18	2.1	19	85	4	53	53	23	2	20	1.57
31449624--31449681	18	3.4	18	69	9	50	36	1	3	58	1.25
31449629--31449735	19	5.3	19	71	17	74	35	0	4	58	1.25
31449664--31449733	19	3.6	19	82	5	79	32	1	5	60	1.29
31451827--31451884	23	2.5	23	85	0	80	20	13	13	51	1.75
31458498--31459337	210	4.0	209	97	2	1605	39	17	9	32	1.82
31460296--31460324	15	1.9	15	100	0	58	48	20	6	24	1.74
31469316--31469577	138	1.9	138	88	3	402	40	8	17	33	1.79
31480927--31480973	19	2.5	19	92	0	76	48	21	0	29	1.50
31482869--31482935	26	2.6	26	90	0	107	22	23	26	26	2.00
31491016--31491080	18	3.7	18	70	14	55	33	0	3	63	1.10
31491026--31491101	16	4.2	18	73	13	59	35	0	5	59	1.20
31492746--31492882	40	3.5	41	76	13	128	40	21	18	20	1.92
31492922--31493116	41	4.8	41	93	0	318	20	21	25	32	1.97
31493402--31493435	15	2.4	14	90	5	50	20	0	38	41	1.53
31493388--31493441	14	3.8	14	80	4	54	20	0	35	44	1.52
31493454--31493512	7	7.9	7	75	14	55	20	0	47	32	1.50
31493454--31493502	15	3.2	15	85	8	55	18	0	46	34	1.49
31493452--31493501	23	2.1	24	92	3	84	16	0	48	36	1.46
31493460--31493510	23	2.2	23	82	6	59	21	0	45	33	1.52
31493685--31493716	15	2.1	15	94	0	55	25	0	34	40	1.56
31493694--31493731	14	2.7	15	84	12	53	26	2	28	42	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31493678--31493767	21	4.2	22	70	8	60	23	1	36	38	1.62
31493733--31493790	22	2.7	22	78	5	57	20	0	43	36	1.52
31494213--31494266	19	2.8	18	78	10	54	70	5	3	20	1.23
31496989--31497133	42	3.4	42	79	5	157	22	15	31	30	1.95
31497962--31498098	50	2.7	50	81	0	175	20	29	24	26	1.99
31502302--31502335	13	2.6	13	100	0	68	29	23	17	29	1.97
31502905--31502954	25	2.0	25	92	0	82	50	20	0	30	1.49
31505963--31505991	15	1.9	15	100	0	58	48	20	6	24	1.74
31511496--31511594	39	2.6	39	79	7	112	37	4	8	50	1.51
31517452--31517573	23	5.3	23	81	0	154	30	26	21	22	1.99
31517452--31517573	46	2.7	46	89	0	181	30	26	21	22	1.99
31517796--31517834	18	2.2	17	86	13	53	46	20	0	33	1.51
31524992--31525052	30	2.0	30	87	0	86	31	22	26	19	1.98
31525132--31525231	26	3.8	26	81	0	128	38	26	18	18	1.93
31525433--31525623	54	3.6	54	77	5	199	23	15	19	41	1.90
31525433--31525629	27	7.3	27	76	2	173	22	16	19	41	1.90
31529534--31529567	16	2.2	15	89	5	50	44	0	0	55	0.99
31530821--31530896	38	2.0	37	94	2	134	46	13	13	27	1.80
31533324--31533420	27	3.7	27	71	10	83	18	15	21	44	1.87
31534920--31534973	25	2.2	25	86	0	72	18	46	11	24	1.81
31576144--31576172	13	2.2	13	100	0	58	37	6	24	31	1.82
31580170--31580294	43	2.9	43	85	2	162	32	24	21	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31587320--31587367	23	2.1	23	92	7	80	20	29	4	45	1.70
31588452--31588496	20	2.2	20	84	4	54	26	24	6	42	1.79
31594861--31594913	19	2.8	19	83	13	65	26	0	3	69	1.05
31594852--31594897	18	2.6	16	81	18	56	28	2	2	67	1.14
31595849--31595879	9	3.4	9	90	0	53	25	12	22	38	1.90
31595932--31595968	9	4.1	9	85	0	56	48	13	8	29	1.71
31598497--31598521	11	2.3	11	100	0	50	84	0	0	16	0.63
31601179--31601207	15	1.9	15	100	0	58	55	6	3	34	1.44
31602389--31602469	42	2.0	41	90	2	126	25	24	2	46	1.65
31613086--31613385	148	2.0	146	89	2	449	37	3	12	47	1.59
31614678--31614959	27	10.5	27	78	6	134	38	23	18	18	1.93
31614695--31615163	54	8.7	53	80	5	360	37	20	20	21	1.95
31614678--31615163	80	6.0	80	78	7	412	37	21	19	21	1.95
31614775--31615163	27	14.5	27	82	2	408	35	20	20	22	1.96
31615233--31615291	24	2.5	24	83	5	75	23	8	22	45	1.79
31615463--31615699	32	7.4	32	78	7	221	20	19	21	37	1.94
31615461--31615698	64	3.7	64	80	6	248	20	20	21	37	1.95
31615463--31615650	98	1.9	98	84	4	254	19	19	22	38	1.94
31616357--31616381	10	2.5	10	100	0	50	56	24	0	20	1.43
31621673--31621880	93	2.2	93	97	0	389	34	8	24	33	1.85
31629611--31629643	15	2.2	15	100	0	66	45	9	21	24	1.80
31637819--31638197	27	14.1	27	81	6	360	39	22	19	18	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31637819--31638197	54	7.0	54	83	4	403	39	22	19	18	1.92
31638430--31638495	26	2.5	26	87	2	78	19	22	22	34	1.96
31638442--31638495	26	2.1	26	92	0	90	20	22	22	35	1.96
31638452--31638507	26	2.2	26	86	0	76	16	23	28	32	1.96
31638498--31638766	32	8.4	32	80	7	233	21	20	20	37	1.94
31638562--31638739	98	1.8	96	85	4	250	20	20	21	37	1.94
31638498--31638746	130	1.9	130	81	6	299	21	20	20	37	1.95
31638758--31638822	22	3.0	21	72	4	58	16	23	16	43	1.88
31638984--31639037	28	1.9	28	88	0	81	16	25	25	31	1.97
31643916--31644186	40	6.8	39	72	7	222	38	18	24	19	1.93
31643917--31644186	80	3.4	80	80	3	294	37	18	24	19	1.93
31644006--31644068	20	3.2	20	66	8	56	34	17	28	19	1.94
31650141--31650379	119	2.0	120	98	0	462	25	21	9	44	1.81
31652234--31652374	40	3.5	40	80	3	131	39	17	26	17	1.91
31654934--31655023	28	3.2	28	87	6	121	18	23	25	32	1.97
31654923--31655045	28	4.0	32	74	18	100	21	23	24	30	1.99
31658276--31658416	40	3.5	40	80	3	131	39	17	26	17	1.91
31660976--31661065	28	3.2	28	87	6	121	18	23	25	32	1.97
31660965--31661087	28	4.0	32	74	18	100	21	23	24	30	1.99
31663241--31663382	53	2.6	54	86	2	187	42	19	17	20	1.90
31663241--31663382	27	5.3	27	81	2	160	42	19	17	20	1.90
31663241--31663408	80	2.1	82	82	6	200	41	19	17	22	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31663530--31663595	26	2.5	27	85	4	82	19	19	21	39	1.93
31663726--31663802	28	2.7	29	86	6	113	19	24	27	28	1.99
31663770--31663840	33	2.1	34	84	2	90	22	23	25	28	2.00
31675544--31675627	28	3.0	27	77	10	87	27	17	7	47	1.74
31688518--31688762	50	4.8	50	87	4	312	27	20	28	22	1.99
31699623--31699657	18	1.9	18	88	0	52	34	0	37	28	1.58
31700914--31700986	27	2.7	27	80	4	85	30	19	17	32	1.95
31704302--31704356	27	2.0	27	92	0	92	36	16	5	41	1.71
31704842--31704866	6	4.2	6	100	0	50	84	0	0	16	0.63
31706126--31706166	21	2.0	21	85	9	57	36	0	4	58	1.20
31712174--31712301	30	4.3	29	85	7	168	33	22	0	42	1.59
31712174--31712301	59	2.2	60	89	1	195	33	22	0	42	1.59
31712838--31712909	4	19.5	4	78	21	70	75	0	25	0	0.81
31712837--31712922	7	13.0	7	80	15	87	74	0	25	0	0.82
31712837--31712922	17	5.0	17	77	18	81	74	0	25	0	0.82
31712841--31712939	7	13.4	7	73	21	69	77	0	20	2	0.86
31712920--31712945	8	3.2	8	100	0	52	88	0	0	11	0.52
31713147--31713191	21	2.0	23	87	8	67	24	53	22	0	1.46
31713567--31713616	18	2.7	19	75	9	50	36	14	4	46	1.63
31713590--31713653	20	3.2	19	82	12	74	35	10	7	45	1.68
31713594--31713636	21	2.0	22	95	4	79	27	11	9	51	1.69
31713590--31713653	21	3.1	21	76	13	69	35	10	7	45	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31713771--31714049	17	15.9	18	70	15	149	31	11	11	45	1.77
31713771--31714049	18	15.9	17	71	13	174	31	11	11	45	1.77
31713770--31714050	35	8.0	36	71	15	178	31	11	11	45	1.76
31714020--31714052	16	1.9	18	88	11	52	24	18	9	48	1.76
31714108--31714176	17	3.9	17	77	17	68	31	11	11	44	1.77
31714102--31714176	37	2.1	34	85	7	87	29	10	12	48	1.74
31714108--31714166	17	3.0	21	83	11	74	37	11	10	40	1.76
31714085--31714230	54	2.7	53	80	13	142	32	8	11	47	1.71
31720591--31721088	158	3.3	152	83	7	530	26	16	21	35	1.95
31720591--31721088	74	6.5	73	81	9	496	26	16	21	35	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145