genome.fa.s2.2.7.7.80.10.50.1000.29.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  29  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9399481--9399529	17	2.9	17	79	11	57	38	12	0	48	1.41
9406798--9406861	17	3.6	17	74	15	67	26	12	14	46	1.79
9406790--9406860	36	2.0	36	94	0	124	26	12	14	46	1.80
9407014--9407055	11	3.8	11	84	6	50	2	23	14	59	1.47
9407014--9407055	22	1.9	22	85	9	59	2	23	14	59	1.47
9407079--9407170	48	1.9	48	93	0	157	19	15	21	43	1.87
9414180--9414207	12	2.3	12	100	0	56	10	0	39	50	1.37
9414825--9414852	12	2.3	12	100	0	56	10	0	39	50	1.37
9413739--9414993	645	1.9	645	98	0	2404	34	11	22	32	1.90
9419744--9419819	24	3.1	24	83	5	91	35	23	25	15	1.94
9429189--9429318	25	5.2	25	75	5	111	36	21	24	17	1.95
9429603--9430603	332	3.0	332	99	0	1984	35	18	5	40	1.75
9436840--9436866	14	1.9	14	100	0	54	59	14	0	25	1.36
9443549--9443587	18	2.2	18	100	0	78	43	5	20	30	1.73
9447586--9447628	16	2.8	17	80	20	58	60	2	6	30	1.35
9453188--9453217	13	2.3	13	100	0	60	40	43	0	16	1.48
9464444--9464515	19	3.8	19	83	0	99	36	8	15	40	1.77
9464724--9464768	23	2.0	23	81	0	54	22	0	15	62	1.33
9467107--9467169	30	2.1	30	96	0	117	23	3	15	57	1.53
9467291--9467321	11	2.8	11	100	0	62	64	0	0	35	0.94
9467793--9467835	21	2.0	22	86	13	63	44	0	0	55	0.99
9469389--9469443	27	2.0	27	100	0	110	36	10	18	34	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9484396--9484443	21	2.2	21	85	7	60	47	0	4	47	1.21
9484511--9484563	13	4.1	13	73	9	54	37	13	3	45	1.61
9495759--9495809	25	2.0	26	84	3	68	25	11	13	49	1.76
9495814--9496435	92	6.8	92	82	6	491	32	6	16	44	1.74
9495917--9496371	154	3.0	153	87	4	598	33	5	17	43	1.72
9495858--9496376	246	2.1	246	90	1	808	32	6	16	44	1.73
9495863--9496432	31	18.5	31	70	13	313	32	6	16	44	1.74
9495814--9496426	61	10.0	60	74	12	295	31	6	16	44	1.75
9504759--9504808	25	2.0	26	84	4	66	26	10	16	48	1.77
9504783--9505463	183	3.7	183	92	2	1066	31	6	17	43	1.75
9504783--9505481	274	2.6	275	90	2	1088	31	7	17	43	1.76
9504783--9505490	92	7.7	92	92	1	1052	31	6	17	43	1.76
9504815--9505564	31	24.5	31	75	7	165	31	6	17	44	1.75
9508029--9508062	2	17.0	2	100	0	68	50	0	0	50	1.00
9518316--9518349	16	2.1	16	88	0	50	17	17	11	52	1.73
9523821--9523846	5	5.2	5	100	0	52	42	19	19	19	1.90
9524373--9524432	30	2.0	31	93	3	104	43	0	36	20	1.52
9529558--9529583	12	2.2	12	100	0	52	46	23	0	30	1.53
9530920--9530959	21	1.9	20	85	10	53	75	0	25	0	0.81
9531582--9531645	13	4.9	13	77	7	67	34	9	21	34	1.86
9531586--9531645	26	2.3	25	83	8	84	36	8	21	33	1.84
9533458--9533632	72	2.4	73	82	6	230	54	12	6	26	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9534053--9534118	18	3.7	18	93	0	114	39	12	15	33	1.84
9535442--9535623	43	4.3	43	91	7	291	10	28	2	58	1.45
9537371--9537474	25	3.9	25	82	14	136	47	27	24	0	1.58
9537361--9537399	19	2.1	19	95	0	69	51	23	25	0	1.49
9537371--9537461	31	3.1	31	87	9	122	46	30	23	0	1.53
9552713--9552851	45	3.1	45	84	0	170	20	16	26	35	1.94
9554444--9554539	48	2.0	48	100	0	192	45	8	20	25	1.79
9554941--9554982	7	5.9	7	94	5	75	42	42	0	14	1.45
9554941--9554982	15	2.9	14	93	6	75	42	42	0	14	1.45
9554941--9554982	22	1.9	22	100	0	84	42	42	0	14	1.45
9556167--9556208	22	2.0	22	86	13	61	38	2	14	45	1.58
9556430--9556467	18	2.1	18	100	0	76	21	10	10	57	1.61
9566791--9566819	8	3.6	8	100	0	58	13	48	0	37	1.43
9572607--9572640	13	2.6	13	95	0	59	61	2	0	35	1.11
9573179--9573226	25	2.0	24	88	8	71	35	12	12	39	1.81
9574800--9574837	19	2.0	19	94	0	67	34	26	7	31	1.85
9574950--9574987	18	2.2	18	85	4	51	60	5	2	31	1.33
9576101--9576152	27	1.9	27	84	0	68	53	7	0	38	1.30
9578341--9578384	17	2.6	17	92	0	70	45	29	2	22	1.65
9578898--9578930	17	1.9	17	100	0	66	42	6	9	42	1.61
9579316--9579361	22	2.1	22	95	0	83	39	13	15	32	1.85
9579590--9579631	20	2.1	20	100	0	84	28	4	0	66	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9582025--9582159	17	7.4	17	65	19	67	31	3	14	49	1.61
9582004--9582161	37	4.3	37	87	4	221	31	4	15	48	1.64
9582021--9582168	37	4.0	37	90	0	224	32	4	15	47	1.64
9582166--9582233	9	7.6	9	93	0	118	26	10	30	32	1.90
9582166--9582233	27	2.5	27	100	0	136	26	10	30	32	1.90
9582296--9582357	29	2.1	29	81	0	70	41	8	14	35	1.75
9588401--9588464	25	2.6	26	85	7	80	59	6	4	29	1.42
9588412--9588463	12	4.1	12	80	9	59	61	7	1	28	1.34
9588896--9588952	19	2.8	20	78	14	64	57	7	3	31	1.42
9591086--9591116	16	2.0	16	93	6	55	70	0	0	29	0.87
9592393--9592418	7	3.7	7	100	0	52	84	0	0	15	0.62
9592485--9592715	115	2.0	116	99	0	455	29	18	16	35	1.93
9598939--9599018	30	2.7	30	84	1	108	51	0	32	16	1.45
9603119--9603662	272	2.0	272	98	0	1052	31	12	22	33	1.92
9605387--9605514	67	1.9	67	90	0	202	25	27	26	20	1.99
9610266--9610316	25	2.0	25	100	0	102	31	11	15	41	1.83
9612683--9612735	26	2.0	26	92	0	88	47	0	18	33	1.49
9616868--9616892	6	4.2	6	100	0	50	84	0	0	16	0.63
9621058--9621194	67	2.0	67	98	0	265	22	10	33	33	1.88
9630405--9630437	14	2.3	15	89	5	50	27	15	33	24	1.95
9630960--9631223	132	2.0	132	91	4	426	30	17	15	35	1.92
9631609--9631679	34	2.1	34	100	0	142	36	14	18	30	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9632068--9633153	44	24.9	44	74	9	775	27	17	24	30	1.97
9632486--9632989	219	2.3	218	86	3	692	29	16	24	29	1.97
9633179--9633419	44	5.5	44	70	9	141	30	19	24	25	1.98
9633174--9633516	176	1.9	176	92	1	571	30	20	23	25	1.99
9633222--9633507	88	3.3	87	67	14	244	30	20	23	25	1.99
9633545--9633687	44	3.3	44	75	7	175	29	17	25	27	1.97
9633523--9633704	86	2.1	86	93	3	312	30	16	23	30	1.96
9633572--9633704	44	3.1	44	74	8	164	30	16	22	30	1.96
9633553--9633772	86	2.6	85	86	5	266	30	19	23	27	1.98
9634077--9634104	10	2.8	10	100	0	56	75	14	0	10	1.06
9634811--9634844	7	4.7	7	88	3	50	20	0	0	79	0.73
9640524--9640874	43	8.2	43	86	2	456	23	25	19	30	1.98
9646518--9646697	53	3.1	53	63	23	128	37	6	15	41	1.73
9646577--9646601	9	2.8	9	100	0	50	32	0	20	48	1.50
9646577--9646627	20	2.5	20	84	15	77	33	0	19	47	1.50
9646473--9646729	121	2.1	121	99	0	505	36	4	15	42	1.68
9646698--9647019	9	38.2	9	72	18	230	30	0	20	48	1.54
9646731--9646920	41	4.4	41	79	16	213	31	0	21	46	1.52
9646731--9646924	66	2.9	66	96	0	361	31	0	21	46	1.52
9646698--9646920	16	14.0	16	76	16	166	32	0	21	46	1.51
9646699--9646920	25	8.9	26	86	5	220	32	0	21	46	1.52
9646707--9647016	25	12.7	24	78	12	136	30	0	20	48	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9646973--9647012	12	3.3	12	85	0	62	32	0	17	50	1.47
9649972--9650558	44	13.5	44	70	9	310	28	26	19	26	1.99
9649876--9650563	218	3.2	218	95	0	1214	27	25	19	27	1.99
9649881--9650563	44	15.7	44	68	11	246	27	25	19	27	1.99
9650549--9651434	129	6.9	129	94	0	1407	23	24	20	31	1.98
9652641--9652674	7	4.9	7	96	0	59	14	14	0	70	1.17
9652632--9652674	21	2.0	22	86	4	61	16	13	0	69	1.19
9654308--9654365	29	2.0	29	100	0	116	37	10	10	41	1.73
9654308--9654386	29	2.4	32	80	20	101	40	7	12	39	1.72
9658639--9658698	23	2.6	22	75	12	59	53	1	3	41	1.27

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145