genome.fa.s2.2.7.7.80.10.50.1000.134.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  134  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44729605--44729632	9	3.1	9	100	0	56	46	10	10	32	1.73
44729684--44729740	29	1.9	30	96	3	107	19	42	0	38	1.51
44730238--44730272	15	2.3	15	85	0	52	77	0	17	5	0.96
44732480--44732505	2	13.0	2	100	0	52	50	0	0	50	1.00
44736630--44736700	33	2.2	33	89	0	106	45	4	12	38	1.62
44738514--44738544	13	2.5	13	94	5	55	35	12	9	41	1.76
44740756--44740786	13	2.5	13	94	5	55	41	9	12	35	1.76
44743458--44743527	21	3.3	21	84	4	88	12	22	17	47	1.81
44750918--44750964	19	2.4	19	85	7	58	14	21	14	48	1.80
44760408--44760441	17	1.9	18	88	5	52	52	2	0	44	1.16
44760425--44760485	22	2.8	22	82	5	70	45	1	8	44	1.43
44763533--44763597	28	2.3	28	84	5	78	16	12	3	67	1.34
44763627--44763666	3	13.3	3	89	0	62	30	2	2	65	1.19
44767872--44767912	7	5.9	7	86	11	57	70	0	17	12	1.16
44769328--44769508	44	4.1	44	66	8	116	25	21	25	27	1.99
44769219--44770496	132	9.7	132	89	4	1615	28	19	24	27	1.99
44775353--44775403	17	2.9	17	73	26	52	64	3	0	31	1.11
44775353--44775410	18	3.3	16	75	15	53	63	5	0	31	1.16
44775380--44775426	25	2.0	22	84	12	58	70	4	0	25	1.05
44775380--44775450	23	3.1	24	82	6	67	67	2	0	29	1.05
44777265--44777341	32	2.5	31	91	8	122	38	7	12	40	1.73
44780075--44780326	84	3.0	84	94	0	432	15	19	28	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44780356--44780523	84	2.0	84	90	2	266	16	19	27	36	1.93
44780159--44781031	198	4.4	198	93	1	1405	19	19	27	34	1.96
44780554--44780721	84	2.0	84	95	2	302	15	19	29	35	1.93
44780752--44780918	84	2.0	83	91	1	271	16	19	28	35	1.93
44780836--44781212	113	3.3	113	88	3	614	23	19	26	30	1.98
44781726--44782654	389	2.4	388	90	4	1428	29	5	23	41	1.76
44782855--44782888	17	2.0	17	94	0	59	17	8	29	44	1.79
44783431--44783487	28	2.1	28	83	3	71	61	7	5	26	1.43
44783444--44783498	28	2.0	28	92	0	92	54	7	5	32	1.51
44788630--44788700	21	3.4	21	92	0	115	35	19	42	2	1.66
44789108--44789338	42	5.5	42	73	7	144	29	20	20	29	1.98
44789202--44789230	13	2.2	13	100	0	58	6	20	31	41	1.79
44789108--44789352	127	1.9	128	89	0	384	28	20	21	29	1.98
44789290--44789393	55	1.9	55	86	4	147	30	19	19	30	1.96
44789344--44789439	42	2.3	42	85	3	131	33	20	20	25	1.97
44789246--44789441	97	2.0	96	89	1	293	30	19	21	28	1.98
44797436--44797651	108	2.0	109	96	0	398	32	12	21	32	1.91
44798793--44798826	15	2.4	14	90	5	50	55	0	14	29	1.40
44801498--44802213	43	16.5	43	78	3	567	25	24	20	29	1.99
44801498--44802138	174	3.7	174	87	2	828	25	24	19	29	1.99
44801592--44802217	217	2.9	217	80	4	591	25	24	20	29	1.99
44801498--44802217	174	4.2	174	85	3	817	25	24	20	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44803513--44803562	7	7.3	7	76	19	52	16	16	0	68	1.22
44803513--44803553	19	2.1	20	86	13	59	17	14	0	68	1.22
44803526--44803557	13	2.5	13	100	0	64	15	15	0	68	1.21
44804361--44804395	17	2.0	18	88	5	54	0	22	0	77	0.78
44808720--44808753	15	2.4	14	90	5	50	55	0	14	29	1.40
44812112--44812355	83	2.9	82	83	6	287	28	21	22	27	1.99
44812936--44812979	21	2.1	21	95	0	79	20	9	40	29	1.83
44815584--44815656	27	2.7	26	78	14	69	45	2	1	50	1.24
44821070--44821164	23	4.1	23	87	0	127	22	29	4	44	1.71
44830966--44831000	18	1.9	18	88	0	52	77	5	8	8	1.13
44831502--44831541	12	3.3	12	96	0	71	55	0	5	40	1.22
44833196--44833250	26	2.2	24	84	12	67	45	5	3	45	1.44
44833592--44833626	17	2.0	18	88	5	54	40	0	8	51	1.33
44834429--44834474	24	2.0	23	83	8	58	39	6	2	52	1.40
44839428--44839522	23	4.1	23	88	0	136	45	4	28	22	1.71
44844838--44844905	31	2.2	31	91	0	109	41	8	16	33	1.79
44844857--44844919	31	2.0	31	90	0	99	39	12	15	31	1.85
44847249--44847279	14	2.2	14	94	0	53	32	19	6	41	1.77
44865571--44865595	13	1.9	13	100	0	50	60	24	8	8	1.52
44865753--44865847	32	2.9	33	72	10	88	22	41	12	24	1.88
44866166--44866319	62	2.5	62	94	2	265	50	8	7	34	1.60
44866243--44866271	14	2.1	14	100	0	58	41	0	6	51	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44866433--44866716	142	2.0	141	93	0	478	23	26	20	29	1.99
44871621--44871853	120	1.9	120	100	0	466	52	6	13	27	1.64
44876785--44876824	21	1.9	21	84	0	53	52	5	0	42	1.23
44877233--44877263	2	16.0	2	93	6	55	51	0	0	48	1.00
44877302--44878305	508	2.0	508	100	0	2008	40	10	15	32	1.82
44878221--44878347	36	3.5	36	70	10	114	47	4	5	42	1.47
44878217--44878362	73	2.0	75	93	2	251	48	6	6	39	1.53
44879134--44879169	18	2.1	17	89	5	54	61	2	0	36	1.11
44879131--44879177	16	3.0	15	77	20	51	61	2	0	36	1.08
44883772--44883817	23	2.0	22	83	4	56	32	8	0	58	1.28
44885807--44885841	2	17.5	2	93	0	61	48	0	0	51	1.00
44890635--44890668	15	2.3	15	89	0	50	58	2	0	38	1.13
44891688--44891716	10	2.9	10	100	0	58	20	20	6	51	1.70
44899182--44899267	40	2.1	41	97	2	165	44	0	4	51	1.22
44905272--44905305	17	2.1	17	88	5	52	32	17	0	50	1.47
44909634--44909685	10	5.3	10	78	21	65	78	0	19	1	0.84
44909638--44909688	8	6.5	8	73	13	52	82	0	15	1	0.76
44909642--44909730	24	3.4	24	78	15	72	75	2	19	3	1.05
44911894--44911924	15	2.1	15	100	0	62	32	25	19	22	1.97
44913657--44913800	33	4.3	33	70	23	129	18	18	28	34	1.95
44913611--44913852	102	2.4	102	95	0	423	21	17	28	33	1.96
44913792--44913895	41	2.5	43	90	3	158	25	17	25	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44916651--44916758	28	3.9	28	89	4	155	33	21	22	23	1.97
44917165--44917349	27	6.9	27	75	6	124	20	13	22	43	1.86
44917165--44917349	54	3.4	53	73	10	169	20	13	22	43	1.86
44917288--44917360	27	2.7	27	84	0	92	21	13	23	41	1.89
44921046--44921137	5	17.4	5	72	14	69	72	2	22	2	1.06
44921051--44921137	26	3.3	26	76	9	70	72	2	22	2	1.08
44930377--44930413	19	1.9	19	94	0	65	70	2	0	27	1.01
44930382--44930428	19	2.5	20	86	6	62	78	2	0	19	0.85
44932989--44933121	66	2.0	66	94	0	230	32	6	20	40	1.78
44933938--44933969	6	5.3	6	100	0	64	84	0	0	15	0.63
44936610--44936661	27	1.9	27	84	7	70	13	13	0	73	1.11
44938038--44938089	24	2.3	22	80	6	59	30	9	13	46	1.75
44949649--44949673	6	4.2	6	100	0	50	36	16	16	32	1.90
44955619--44955708	28	3.2	28	76	4	92	33	21	20	25	1.97
44955615--44955707	27	3.4	28	76	5	91	33	21	19	25	1.97
44955795--44955870	26	2.9	26	90	0	107	40	23	19	15	1.90
44956063--44956275	27	8.0	27	82	1	259	21	17	18	42	1.89
44956403--44956541	71	2.0	71	95	0	251	29	14	21	34	1.93
44963853--44963915	29	2.2	28	85	2	81	58	1	6	33	1.33
44964112--44964212	3	33.0	3	84	2	67	55	11	1	30	1.47
44966639--44966715	40	1.9	40	91	0	127	32	31	11	24	1.91
44966750--44966837	28	3.1	28	88	1	122	30	22	21	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44966946--44967016	26	2.7	26	75	0	79	45	23	14	16	1.84
44967212--44967453	27	9.0	27	79	3	213	21	16	18	43	1.87
44967198--44967451	81	3.1	81	83	5	307	22	16	18	42	1.89
44968106--44968175	34	2.0	36	86	8	99	57	8	28	5	1.52
44969573--44969606	6	5.7	6	100	0	68	14	0	0	85	0.60
44973414--44973461	18	2.7	18	78	9	62	41	2	16	39	1.60
44975879--44975920	3	14.0	3	100	0	84	33	0	33	33	1.58
44976966--44977011	18	2.4	20	75	20	53	34	0	6	58	1.24
44979162--44979397	50	4.8	50	85	3	313	21	32	20	26	1.97
44981352--44981384	17	1.9	17	93	0	57	18	18	15	48	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145