genome.fa.s2.2.7.7.80.10.50.1000.37.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  37  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11735697--11735769	33	2.2	33	85	4	94	34	19	19	27	1.96
11738285--11738329	18	2.3	20	85	11	67	20	0	26	53	1.46
11739616--11739679	3	21.3	3	90	6	103	34	1	0	64	1.03
11739879--11739923	18	2.3	20	85	11	67	20	0	26	53	1.46
11741210--11741281	3	23.7	3	88	8	110	34	1	0	63	1.03
11744527--11744635	41	2.6	41	92	1	182	13	33	29	23	1.93
11747276--11747333	9	6.2	9	78	7	62	32	0	43	24	1.55
11748108--11748148	22	1.9	21	90	5	64	60	0	0	39	0.96
11753337--11753382	22	2.1	22	84	8	58	50	2	15	32	1.56
11760353--11760415	30	2.1	30	90	0	99	23	6	15	53	1.65
11763726--11763911	50	3.7	49	85	5	230	30	23	15	30	1.95
11765558--11765615	20	2.9	19	82	5	53	34	8	25	31	1.86
11782210--11782238	12	2.4	12	100	0	58	6	6	13	72	1.26
11782210--11782307	31	3.3	30	79	12	112	4	11	14	70	1.30
11785834--11785883	25	2.0	25	96	0	91	40	10	8	42	1.68
11786557--11786608	24	2.2	24	85	0	68	51	3	3	40	1.38
11790950--11791000	24	2.1	24	85	0	66	49	7	3	39	1.51
11794596--11794625	15	1.9	16	93	6	53	70	0	3	26	1.03
11797018--11797103	22	3.9	22	71	6	66	38	18	25	17	1.92
11796993--11797102	44	2.5	44	77	2	105	37	18	26	18	1.93
11809452--11809499	18	2.7	18	86	0	69	43	0	16	39	1.48
11812252--11812362	55	2.0	55	98	0	213	36	26	0	36	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11813963--11814022	30	1.9	33	83	10	81	35	13	15	36	1.86
11815797--11815870	28	2.6	28	78	2	85	32	27	12	28	1.92
11817715--11817788	21	3.5	21	70	7	60	18	18	17	44	1.87
11817710--11817865	42	3.7	42	82	8	167	19	19	16	44	1.86
11817805--11817865	21	3.0	20	72	15	61	19	19	14	45	1.85
11817754--11817860	21	5.1	21	63	15	51	20	19	15	43	1.87
11817710--11817887	42	4.2	41	77	9	155	18	19	16	44	1.86
11822676--11822712	9	4.1	9	92	0	65	29	10	13	45	1.77
11823836--11823879	14	3.1	14	80	6	52	40	0	4	54	1.21
11828366--11828529	63	2.6	63	87	0	220	22	27	25	24	2.00
11833423--11833491	32	2.2	32	89	0	102	44	26	15	13	1.83
11834761--11834793	17	1.9	17	88	11	50	51	3	0	45	1.16
11836987--11837044	20	2.8	20	79	7	64	31	10	22	36	1.88
11838595--11838695	22	4.3	24	80	8	93	38	16	25	18	1.92
11839546--11839597	26	2.0	26	82	17	63	0	32	3	63	1.12
11851733--11851785	11	5.0	10	76	13	52	3	16	0	79	0.88
11855913--11855967	28	1.9	29	96	3	103	47	9	21	21	1.78
11863632--11863670	20	2.0	19	85	14	53	58	0	25	15	1.37
11866679--11866719	3	13.7	3	100	0	82	31	0	0	68	0.90
11876060--11876089	2	15.5	2	93	6	53	46	0	0	53	1.00
11880062--11880100	20	2.0	20	85	5	53	66	5	0	28	1.12
11880933--11881002	21	3.3	21	68	5	61	38	5	2	52	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11881552--11881589	19	2.1	18	90	5	58	57	5	0	36	1.21
11897644--11897773	65	2.0	65	100	0	260	35	15	20	29	1.93
11908431--11908498	25	2.7	26	79	4	77	42	4	0	52	1.21
11908444--11908510	30	2.3	29	80	12	75	41	7	0	50	1.30
11913568--11913628	27	2.3	27	97	0	113	29	8	19	42	1.80
11914004--11914042	3	13.0	3	100	0	78	33	0	0	66	0.92
11914334--11914367	17	2.1	17	88	5	52	67	0	0	32	0.91
11917289--11917339	23	2.2	23	92	0	84	27	9	21	41	1.84
11925462--11925515	21	2.6	19	77	11	54	37	3	7	51	1.48
11925999--11926028	16	1.9	15	93	6	51	30	0	16	53	1.44
11931370--11931447	3	26.3	3	76	12	72	60	2	5	32	1.32
11931370--11931447	23	3.4	23	80	5	88	60	2	5	32	1.32
11931370--11931447	17	4.4	18	79	9	72	60	2	5	32	1.32
11932704--11932886	92	2.0	92	89	0	276	19	20	42	17	1.89
11937837--11937944	20	5.4	20	74	5	94	12	26	19	41	1.86
11937851--11937944	40	2.4	40	83	5	111	11	26	19	42	1.85
11939076--11940112	517	2.0	515	91	0	1662	28	11	23	36	1.90
11942979--11943012	11	3.0	11	91	4	50	29	0	0	70	0.87
11943174--11943202	12	2.5	12	94	5	51	68	0	0	31	0.89
11960912--11960948	16	2.3	16	85	0	56	43	5	29	21	1.75
11960929--11961022	44	2.1	44	88	5	136	30	5	28	35	1.80
11964030--11964085	27	2.1	27	83	6	69	19	8	7	64	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11967822--11967900	41	1.9	41	92	0	131	49	22	7	20	1.74
11973792--11973863	14	5.5	13	76	14	60	75	1	2	20	1.01
11973810--11973870	6	9.8	6	81	15	63	77	0	4	18	0.95
11973831--11973862	16	1.9	16	93	6	55	81	0	0	18	0.70
11973824--11973869	23	2.0	24	87	12	69	78	0	4	17	0.91
11973795--11973870	36	2.1	35	81	15	86	75	1	3	19	1.04
11973810--11973870	13	4.9	12	77	20	63	77	0	4	18	0.95
11978508--11978548	17	2.4	17	95	4	73	34	31	9	24	1.88
11979776--11979829	27	2.0	27	92	0	90	22	24	5	48	1.72
11986997--11987055	28	2.1	28	83	0	73	33	15	15	35	1.89
12011837--12011883	24	2.0	24	87	8	69	51	19	6	23	1.70
12011930--12012017	27	3.3	27	95	0	158	20	14	20	44	1.86
12011903--12012017	54	2.1	53	84	7	151	20	14	21	42	1.88
12021273--12021310	15	2.5	15	91	0	58	5	7	13	73	1.22
12021273--12021329	23	2.6	22	86	10	82	7	7	12	73	1.23
12022884--12022945	27	2.5	24	80	12	63	41	3	1	53	1.27
12027646--12027701	27	2.1	27	100	0	112	48	10	10	30	1.72
12035392--12035435	22	2.0	22	100	0	88	31	9	18	40	1.81
12036674--12036743	20	3.6	19	74	12	63	5	15	2	75	1.11
12049548--12049610	29	2.2	28	78	10	67	47	1	4	46	1.33
12055586--12055758	85	2.0	86	98	1	339	57	10	2	30	1.45
12056221--12056285	23	2.8	24	75	18	64	21	3	7	67	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12073755--12073784	8	3.8	8	100	0	60	40	33	0	26	1.57
12075777--12075813	9	4.1	9	92	0	65	29	10	13	45	1.77
12083990--12084016	12	2.2	12	100	0	54	37	7	33	22	1.82
12086367--12086410	13	3.4	13	87	0	61	31	4	18	45	1.69
12086640--12086754	58	2.0	59	85	1	160	39	28	7	24	1.83
12091306--12091360	27	2.0	28	96	3	103	49	10	7	32	1.65
12098515--12098569	6	9.2	6	89	0	83	1	30	14	52	1.52
12101635--12101664	2	15.0	2	100	0	60	0	50	0	50	1.00
12114052--12114130	25	3.2	26	83	8	110	27	5	17	49	1.68
12116018--12116052	18	1.9	18	88	0	52	28	11	2	57	1.48
12118393--12119214	284	2.8	288	78	6	818	36	14	10	38	1.81
12120709--12120786	37	2.1	37	100	0	156	24	16	12	46	1.82
12123049--12123079	3	10.3	3	100	0	62	64	0	0	35	0.94
12134195--12134269	23	3.3	23	98	0	141	37	26	18	17	1.93
12139504--12139548	22	2.0	22	83	8	56	40	6	40	13	1.71
12140048--12140174	20	6.3	20	66	21	61	31	7	7	54	1.54
12144898--12144925	5	5.6	5	100	0	56	39	0	0	60	0.97
12150686--12150938	140	1.8	141	94	2	456	27	20	20	31	1.98
12150930--12151106	42	4.2	42	87	5	250	29	20	25	23	1.99
12160724--12160764	14	2.8	15	85	3	57	43	39	0	17	1.49
12161540--12161624	21	4.0	20	72	11	53	45	31	1	21	1.59
12161548--12161627	14	5.6	14	70	14	56	47	31	0	21	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12161927--12162145	113	1.9	114	83	6	284	25	24	20	30	1.98
12162268--12162500	112	2.1	113	82	7	278	25	22	19	33	1.97
12162831--12162998	89	1.9	84	84	5	219	42	19	10	27	1.84
12166585--12166610	13	2.0	13	100	0	52	30	23	23	23	1.99
12166675--12166817	64	2.2	64	86	2	189	28	16	27	27	1.97
12172975--12173148	91	1.9	91	90	0	276	32	26	15	25	1.96
12175027--12175291	25	10.7	25	67	13	75	33	20	26	18	1.96
12174993--12175133	50	2.8	48	78	11	140	32	21	26	19	1.97
12175064--12175157	48	1.9	49	80	8	111	37	21	25	15	1.93
12175195--12175284	26	3.5	26	87	4	112	33	24	26	15	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145