genome.fa.s2.2.7.7.80.10.50.1000.117.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  117  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39193324--39193349	2	13.0	2	100	0	52	50	0	0	50	1.00
39197797--39197853	22	2.6	22	85	0	78	8	21	15	54	1.68
39197858--39198144	142	2.0	143	97	0	549	25	8	11	54	1.65
39202720--39202776	22	2.6	22	85	0	78	8	21	15	54	1.68
39208241--39208280	3	13.3	3	100	0	80	32	0	35	32	1.58
39208611--39208659	11	4.4	11	76	5	53	34	2	0	63	1.06
39208622--39208676	23	2.3	23	90	9	85	32	0	1	65	1.03
39211286--39211351	26	2.6	26	82	2	71	16	25	19	37	1.93
39211371--39211436	24	2.7	24	83	2	69	18	28	19	33	1.95
39211393--39211536	25	5.9	25	70	5	80	19	25	21	34	1.97
39214944--39215121	51	3.5	50	72	8	146	25	16	26	30	1.97
39215129--39215386	42	6.1	43	81	9	271	21	18	24	35	1.95
39215128--39215386	84	3.1	83	87	4	358	21	18	23	35	1.96
39222528--39222578	26	2.0	26	84	7	68	19	21	21	37	1.95
39225936--39225979	20	2.2	20	100	0	88	43	9	25	22	1.82
39228704--39228829	30	4.2	30	85	2	155	24	32	26	16	1.96
39228711--39228830	60	2.0	60	88	3	179	24	32	26	16	1.96
39229588--39229684	40	2.4	41	81	11	103	19	5	4	71	1.22
39229638--39229684	17	2.8	17	83	3	60	14	4	6	74	1.17
39230409--39230434	13	2.0	13	100	0	52	30	15	23	30	1.95
39230994--39231027	15	2.3	15	95	5	61	32	11	26	29	1.92
39231355--39231397	6	7.5	6	86	2	54	16	0	4	79	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39231355--39231397	18	2.5	17	88	7	61	16	0	4	79	0.90
39235878--39235935	30	1.9	30	89	0	89	27	22	17	32	1.96
39236326--39236374	24	2.0	24	100	0	98	20	4	28	46	1.68
39238679--39238845	18	9.3	18	82	2	174	3	14	29	52	1.58
39238652--39238845	54	3.6	53	80	4	192	3	15	27	52	1.60
39238652--39238860	36	5.8	36	83	0	202	3	17	28	50	1.63
39238697--39238863	54	3.1	53	81	1	181	3	16	28	51	1.61
39241846--39241923	40	2.0	40	82	10	97	30	11	10	47	1.73
39243283--39243321	19	2.1	19	85	4	53	58	0	2	38	1.12
39243857--39244115	43	6.1	43	82	4	260	34	25	13	25	1.93
39243857--39244115	86	3.1	84	80	5	299	34	25	13	25	1.93
39246162--39246186	7	3.6	7	100	0	50	28	0	12	60	1.32
39248207--39248251	19	2.3	19	96	3	81	15	4	6	73	1.21
39248367--39248451	7	11.9	7	79	10	59	36	41	0	22	1.54
39248367--39248447	14	5.6	14	74	10	65	35	43	0	20	1.53
39248889--39248986	40	2.5	40	84	0	124	24	22	24	28	1.99
39248912--39248999	40	2.2	40	81	4	106	25	22	22	29	1.99
39249056--39249133	40	2.0	40	92	7	133	29	25	20	24	1.99
39248814--39249134	155	2.1	155	86	2	457	27	22	20	29	1.98
39249941--39249965	3	8.3	3	100	0	50	32	68	0	0	0.90
39250072--39250101	6	5.0	6	100	0	60	16	33	16	33	1.92
39251767--39251821	2	27.5	2	84	0	74	47	3	3	45	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39251978--39252022	19	2.5	17	82	13	54	53	2	2	42	1.25
39252008--39252064	23	2.5	23	83	8	71	64	0	1	33	1.04
39257664--39257717	27	2.0	27	82	7	65	38	5	5	50	1.49
39260642--39260955	149	2.1	149	86	4	427	43	5	8	42	1.59
39261201--39261265	27	2.5	25	76	9	67	16	27	20	35	1.94
39261308--39261365	25	2.4	25	80	8	66	20	31	17	31	1.96
39271602--39271674	27	2.8	25	82	8	101	16	27	23	32	1.96
39271711--39271769	25	2.4	23	83	13	66	16	28	25	28	1.97
39271583--39271796	24	8.5	26	70	14	96	19	25	22	32	1.98
39273501--39273603	39	2.5	40	89	7	145	33	2	0	62	1.17
39276407--39276544	21	6.6	21	76	0	114	44	17	20	18	1.87
39276407--39276583	42	4.2	42	80	2	176	42	16	21	19	1.89
39276405--39276583	84	2.1	84	82	2	207	43	16	21	19	1.88
39276407--39276583	21	8.4	21	75	2	113	42	16	21	19	1.89
39281455--39281498	23	1.9	23	82	17	56	68	2	2	27	1.14
39283957--39284180	74	3.0	74	100	0	448	39	8	17	34	1.80
39288187--39288296	58	1.9	58	84	0	148	40	12	9	38	1.75
39292898--39292930	2	16.5	2	100	0	66	51	0	0	48	1.00
39306476--39306537	23	2.7	23	92	0	97	50	17	1	30	1.56
39306466--39306536	23	3.2	21	84	9	65	46	19	2	30	1.64
39319922--39319961	20	2.0	20	85	0	53	45	2	10	42	1.51
39321449--39321503	27	2.0	27	92	0	92	30	10	18	40	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39326093--39326117	13	1.9	13	100	0	50	40	24	4	32	1.73
39328279--39328377	52	1.9	51	85	6	137	46	2	32	19	1.61
39331689--39331732	21	2.1	21	82	0	52	43	2	4	50	1.35
39331935--39331964	15	1.9	16	93	6	53	0	16	0	83	0.65
39334235--39334842	304	2.0	304	99	0	1207	34	13	19	32	1.90
39338052--39338187	39	3.5	39	95	0	236	46	22	3	27	1.68
39338094--39338160	17	3.7	17	70	25	57	46	23	1	28	1.61
39338222--39338260	16	2.5	15	87	4	51	48	28	0	23	1.51
39342809--39342904	48	2.0	48	100	0	192	39	18	14	27	1.90
39344723--39344754	10	3.3	10	91	8	57	28	0	0	71	0.86
39344724--39344754	9	3.3	9	91	8	53	29	0	0	70	0.87
39344702--39344765	19	3.4	19	75	14	69	32	1	0	65	1.02
39344703--39344777	39	1.9	38	81	7	89	34	2	0	62	1.09
39344702--39344765	18	3.4	18	72	19	58	32	1	0	65	1.02
39344697--39344822	37	3.3	37	73	15	105	31	2	0	65	1.05
39344742--39344813	29	2.4	30	90	4	110	36	2	0	61	1.11
39344726--39344828	29	3.7	28	78	10	104	36	1	0	61	1.07
39348299--39348341	22	1.9	23	90	4	70	65	6	4	23	1.37
39359232--39359278	15	3.1	15	78	6	58	44	10	0	44	1.38
39364532--39364565	17	1.9	18	88	5	52	79	0	17	2	0.86
39368500--39368650	41	3.7	41	77	3	135	16	19	28	35	1.93
39368495--39368650	82	1.9	82	84	2	206	16	19	30	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39369256--39369316	7	8.6	7	81	3	59	24	0	44	31	1.54
39369269--39369323	29	1.9	28	85	3	74	27	1	38	32	1.67
39369579--39369610	7	4.6	7	100	0	64	15	0	53	31	1.43
39370867--39370927	7	8.6	7	81	3	59	24	0	44	31	1.54
39370880--39370934	29	1.9	28	85	3	74	27	1	38	32	1.67
39371733--39371764	7	4.6	7	100	0	64	15	0	53	31	1.43
39372194--39373501	337	4.0	333	86	4	1674	30	17	18	33	1.94
39373838--39373869	13	2.4	14	85	15	50	0	15	18	65	1.27
39374609--39374694	18	4.6	18	75	15	84	45	10	0	44	1.38
39374586--39374644	31	1.9	31	82	6	75	40	15	0	44	1.46
39374606--39374664	17	3.4	17	81	4	73	42	13	0	44	1.44
39374557--39374699	39	3.7	38	76	11	123	44	11	1	42	1.50
39374804--39374913	44	2.5	45	88	7	154	51	14	0	32	1.49
39374898--39374939	7	5.7	7	83	10	57	52	16	2	28	1.56
39374791--39375172	16	22.9	16	75	13	235	49	17	1	30	1.57
39374845--39375038	83	2.4	81	73	14	200	49	15	2	32	1.57
39374948--39375001	21	2.6	21	93	0	90	46	12	1	38	1.53
39374994--39375176	9	22.3	9	69	18	123	48	20	2	28	1.61
39374994--39375187	25	7.9	25	75	14	181	49	20	2	27	1.60
39380620--39380670	21	2.4	21	90	6	77	37	17	43	1	1.61
39380580--39380755	87	2.0	86	87	1	253	39	17	31	11	1.85
39381114--39381215	42	2.4	43	82	11	129	30	20	26	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39381149--39381408	43	6.1	43	87	5	282	28	21	23	26	1.99
39381502--39381545	22	2.0	22	86	0	61	47	27	13	11	1.77
39381686--39381766	42	1.9	42	87	5	119	27	11	18	43	1.84
39381789--39381828	14	2.8	14	88	3	53	57	2	17	22	1.52
39382645--39382889	122	2.0	123	99	0	483	50	6	4	38	1.47
39385105--39385131	13	2.1	13	100	0	54	44	0	0	55	0.99
39393407--39393441	18	2.0	17	88	5	52	45	0	0	54	0.99
39393607--39393697	45	2.0	45	85	2	121	37	28	6	27	1.82
39393678--39393713	16	2.2	16	100	0	72	38	36	0	25	1.56
39394921--39394946	9	2.9	9	100	0	52	57	7	23	11	1.59

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145