Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  33  of  145  ( 17348 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10705581--10705622
20
2.1
20
86
0
57
42
0
4
52
1.22
10710215--10710891
174
3.9
174
87
1
881
29
23
17
28
1.97
10712436--10712499
17
3.4
18
77
16
51
50
0
0
50
1.00
10713367--10713420
26
2.1
26
82
6
65
40
5
22
31
1.77
10720109--10720319
105
2.0
106
97
0
397
36
23
20
20
1.96
10727961--10728006
22
2.0
23
88
12
69
52
2
0
45
1.13
10731039--10731091
26
2.0
26
85
3
70
39
28
18
13
1.88
10731901--10731934
17
2.0
17
94
0
59
26
11
32
29
1.92
10742153--10742189
9
4.1
9
92
0
65
45
13
10
29
1.77
10742511--10742553
17
2.5
18
82
17
56
32
2
9
55
1.44
10743002--10743027
5
5.2
5
100
0
52
19
19
19
42
1.90
10743283--10743331
20
2.3
21
79
13
55
51
20
0
28
1.48
10743325--10743384
2
31.0
2
88
6
70
48
5
1
45
1.34
10743369--10743496
55
2.3
55
86
4
166
39
17
3
38
1.69
10747139--10747208
16
4.4
16
85
0
86
32
25
1
40
1.65
10748200--10748231
5
6.4
5
100
0
64
40
40
0
18
1.51
10752863--10752969
56
1.9
56
92
3
180
42
17
14
24
1.87
10759195--10759286
19
4.8
19
90
0
148
36
11
15
35
1.84
10760841--10761035
98
2.0
98
93
0
336
29
9
24
37
1.86
10766239--10767125
132
6.7
132
92
0
1215
28
19
23
28
1.98
10766576--10767046
44
10.7
44
65
13
153
28
19
23
28
1.98
10772028--10772057
11
2.7
11
100
0
60
26
46
6
20
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10785048--10785175
63
2.0
63
100
0
256
31
9
14
45
1.76
10790447--10790485
13
3.0
12
85
14
51
2
35
0
61
1.10
10797238--10797281
21
2.1
21
87
8
63
36
0
13
50
1.42
10797252--10797300
23
2.2
21
78
7
53
40
2
12
44
1.53
10800190--10800346
27
5.9
27
69
4
93
28
21
12
36
1.90
10800300--10800374
27
2.8
27
81
0
87
24
22
17
36
1.95
10802576--10802760
102
1.8
102
89
3
293
23
18
27
30
1.98
10802576--10802760
51
3.7
50
78
6
169
23
18
27
30
1.98
10806744--10806934
89
2.2
90
96
3
354
29
13
8
48
1.72
10811026--10811086
32
1.9
32
96
0
113
39
9
14
36
1.80
10816876--10816918
15
2.9
15
82
6
52
2
20
18
58
1.50
10816877--10816928
20
2.6
20
84
0
77
3
21
17
57
1.55
10828221--10828347
64
2.0
64
80
0
146
23
20
18
37
1.95
10828441--10828540
25
4.0
25
71
5
69
22
22
18
38
1.94
10829487--10829575
42
2.1
42
82
0
106
21
32
25
20
1.97
10829501--10829583
42
2.0
42
90
0
130
19
28
30
21
1.98
10833763--10833793
14
2.2
14
94
0
53
19
22
0
58
1.40
10834034--10834078
19
2.4
19
78
14
56
35
20
20
24
1.96
10834576--10834636
31
2.0
31
100
0
122
16
26
22
34
1.95
10837853--10837909
29
1.9
31
89
7
91
45
8
15
29
1.77
10838039--10838115
39
2.0
39
84
2
102
31
10
16
41
1.82
10848485--10848532
18
2.5
19
86
6
62
35
0
4
60
1.16
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10848480--10848525
19
2.6
17
81
18
58
39
0
4
56
1.19
10848450--10848546
28
3.4
28
76
9
90
36
0
6
57
1.24
10851300--10851346
24
2.0
23
84
12
60
42
0
2
55
1.12
10859494--10859518
9
2.8
9
100
0
50
8
12
0
80
0.92
10860275--10860568
109
2.7
109
95
1
527
29
15
24
29
1.96
10860971--10861051
38
2.1
39
97
2
155
22
4
22
50
1.68
10864426--10864483
19
3.2
19
70
4
57
60
5
3
31
1.35
10865989--10866028
15
2.6
15
84
4
53
67
2
2
27
1.16
10870691--10870727
19
1.9
19
89
10
58
54
5
0
40
1.24
10873155--10873185
15
2.1
15
93
0
53
29
6
29
35
1.82
10879880--10879984
52
2.0
55
90
5
171
41
0
29
28
1.56
10879887--10880015
52
2.4
52
84
8
163
40
0
31
27
1.57
10879994--10880034
19
2.0
21
90
9
68
34
0
29
36
1.58
10880645--10880700
22
2.5
22
81
13
62
26
7
5
60
1.44
10882096--10882134
18
2.1
19
85
4
53
35
7
0
56
1.28
10887893--10888010
24
4.9
24
72
4
85
30
17
27
24
1.97
10895306--10895501
75
2.6
75
90
4
317
35
15
17
31
1.91
10898678--10898717
18
2.3
18
82
4
55
27
2
2
67
1.16
10900567--10900614
25
2.0
25
87
4
71
14
27
20
37
1.92
10900771--10900823
24
2.2
24
83
6
63
18
30
20
30
1.97
10904869--10905390
258
2.0
258
98
0
1008
28
23
13
33
1.94
10905901--10905965
17
3.6
18
73
17
53
33
0
0
66
0.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10908869--10908960
46
2.0
46
97
0
175
30
17
18
33
1.94
10918527--10918568
21
2.0
21
85
4
57
35
2
0
61
1.09
10922618--10922669
26
2.0
26
100
0
104
42
11
3
42
1.59
10922624--10922675
26
2.2
23
83
13
61
38
13
1
46
1.54
10923654--10923697
23
1.9
23
85
0
61
61
6
2
29
1.34
10924126--10924169
23
1.9
23
85
0
61
61
6
2
29
1.34
10923433--10924376
472
2.0
472
99
0
1879
36
17
7
38
1.79
10924537--10924571
3
11.3
3
93
6
61
34
0
0
65
0.93
10924570--10924610
3
13.7
3
100
0
82
34
31
0
34
1.58
10925866--10925981
61
1.9
61
90
0
187
42
3
6
48
1.44
10925870--10925974
31
3.4
31
71
7
97
40
3
5
50
1.44
10927310--10927350
22
2.0
20
85
9
55
41
7
17
34
1.77
10930212--10930259
8
5.5
8
77
18
51
81
0
2
16
0.79
10930213--10930269
28
2.0
29
93
3
98
71
0
3
24
1.01
10930991--10931015
5
5.0
5
100
0
50
80
0
20
0
0.72
10933641--10933674
14
2.4
14
86
13
52
55
0
5
38
1.24
10933724--10933797
28
2.6
28
97
0
139
22
24
9
43
1.83
10941794--10941927
31
4.3
32
64
14
84
37
3
5
53
1.41
10941792--10941848
20
2.8
19
76
10
60
35
0
5
59
1.20
10941761--10941945
92
2.0
93
98
1
363
38
5
5
50
1.48
10941884--10941940
20
2.8
19
76
10
60
35
0
5
59
1.20
10951025--10951060
16
2.2
16
100
0
72
25
0
36
38
1.56
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10951277--10951329
16
3.4
15
79
7
52
52
1
0
45
1.11
10951184--10956501
155
34.3
155
99
0
10609
44
3
4
47
1.39
10951432--10951484
16
3.4
15
79
7
52
52
1
0
45
1.11
10951587--10951639
16
3.4
15
79
7
52
52
1
0
45
1.11
10951742--10951794
16
3.4
15
79
7
52
52
1
0
45
1.11
10951897--10951949
16
3.4
15
79
7
52
52
1
0
45
1.11
10952052--10952104
16
3.4
15
79
7
52
52
1
0
45
1.11
10952207--10952259
16
3.4
15
79
7
52
52
1
0
45
1.11
10952362--10952414
16
3.4
15
79
7
52
52
1
0
45
1.11
10952517--10952569
16
3.4
15
79
7
52
52
1
0
45
1.11
10952672--10952724
16
3.4
15
79
7
52
52
1
0
45
1.11
10952827--10952879
16
3.4
15
79
7
52
52
1
0
45
1.11
10952982--10953034
16
3.4
15
79
7
52
52
1
0
45
1.11
10953137--10953189
16
3.4
15
79
7
52
52
1
0
45
1.11
10953292--10953344
16
3.4
15
79
7
52
52
1
0
45
1.11
10953447--10953499
16
3.4
15
79
7
52
52
1
0
45
1.11
10953602--10953654
16
3.4
15
79
7
52
52
1
0
45
1.11
10953757--10953809
16
3.4
15
79
7
52
52
1
0
45
1.11
10953912--10953964
16
3.4
15
79
7
52
52
1
0
45
1.11
10954067--10954119
16
3.4
15
79
7
52
52
1
0
45
1.11
10954222--10954274
16
3.4
15
79
7
52
52
1
0
45
1.11
10954377--10954429
16
3.4
15
79
7
52
52
1
0
45
1.11
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10954532--10954584
16
3.4
15
79
7
52
52
1
0
45
1.11
10954687--10954739
16
3.4
15
79
7
52
52
1
0
45
1.11
10954842--10954894
16
3.4
15
79
7
52
52
1
0
45
1.11
10954997--10955049
16
3.4
15
79
7
52
52
1
0
45
1.11
10955152--10955204
16
3.4
15
79
7
52
52
1
0
45
1.11
10955307--10955359
16
3.4
15
79
7
52
52
1
0
45
1.11
10955462--10955514
16
3.4
15
79
7
52
52
1
0
45
1.11
10955617--10955669
16
3.4
15
79
7
52
52
1
0
45
1.11
10955772--10955824
16
3.4
15
79
7
52
52
1
0
45
1.11
10955927--10955979
16
3.4
15
79
7
52
52
1
0
45
1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145