genome.fa.s2.2.7.7.80.10.50.1000.133.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  133  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44360299--44360341	19	2.3	19	95	0	77	18	48	11	20	1.79
44362531--44362580	25	2.0	25	96	0	91	8	26	12	54	1.64
44363626--44363734	25	4.4	25	80	7	71	16	25	21	36	1.94
44363643--44363734	25	3.7	23	78	17	96	16	27	20	35	1.94
44363650--44363744	49	1.9	50	87	10	142	17	25	21	35	1.95
44365646--44365689	23	1.9	23	85	0	61	61	6	0	31	1.22
44374400--44374431	16	2.0	17	88	11	50	53	6	12	28	1.62
44378355--44378391	6	6.2	6	100	0	74	67	16	0	16	1.23
44380812--44380839	14	2.0	14	100	0	56	35	14	0	50	1.43
44404868--44404892	13	1.9	13	100	0	50	8	0	24	68	1.16
44411845--44412263	208	2.0	208	98	0	811	43	19	20	16	1.88
44415094--44415137	18	2.4	18	88	3	61	63	0	2	34	1.07
44415680--44415728	24	2.0	24	84	0	62	69	6	4	20	1.27
44423438--44423478	16	2.6	16	88	0	55	43	7	4	43	1.53
44423453--44423506	22	2.5	22	81	0	63	44	1	3	50	1.30
44430064--44430131	33	2.1	33	88	0	100	36	22	20	20	1.95
44440028--44440085	21	2.5	22	81	10	64	50	3	0	46	1.18
44440028--44440077	22	2.2	23	85	7	66	50	2	0	48	1.12
44441167--44441263	43	2.3	43	94	0	167	54	8	22	14	1.66
44441395--44441437	17	2.5	16	78	14	50	13	4	2	79	1.00
44451507--44451551	15	2.9	16	78	15	51	57	0	20	22	1.40
44451480--44451565	43	2.0	43	88	0	127	53	3	20	22	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44451553--44451607	27	2.0	27	82	6	67	47	3	27	21	1.68
44466517--44466589	29	2.6	29	86	2	94	26	17	24	31	1.97
44468391--44468437	24	2.0	24	84	16	62	51	17	0	31	1.46
44475960--44476024	12	5.5	12	74	23	50	72	0	4	23	1.03
44475952--44476018	20	3.3	19	79	20	66	70	0	5	23	1.09
44488312--44488351	3	13.3	3	100	0	80	67	0	0	32	0.91
44491163--44491202	21	2.0	21	90	5	64	22	42	10	25	1.84
44494748--44494795	6	8.2	6	93	2	80	0	35	0	64	0.94
44498703--44498774	6	12.0	6	98	0	126	30	0	19	50	1.48
44503534--44503575	21	2.0	21	100	0	84	28	23	9	38	1.86
44503811--44503844	17	2.0	17	88	0	50	76	0	23	0	0.79
44504031--44504064	16	2.2	15	89	5	50	23	0	5	70	1.09
44526479--44526773	147	2.0	148	97	2	567	52	6	7	32	1.56
44526749--44526795	20	2.3	20	89	7	69	70	2	0	27	0.99
44529959--44531261	660	2.0	660	86	1	1835	36	23	17	22	1.95
44538748--44538896	72	2.1	72	93	2	255	38	16	20	23	1.92
44540335--44540361	12	2.2	12	100	0	54	48	29	7	14	1.71
44542784--44542884	43	2.4	43	85	5	125	37	11	29	20	1.89
44543129--44543652	260	2.0	263	98	1	1018	29	12	17	41	1.85
44545413--44545438	3	8.7	3	100	0	52	0	30	0	69	0.89
44550786--44550829	22	2.0	22	86	0	61	77	6	9	6	1.13
44557622--44557734	19	5.8	19	88	4	172	38	9	15	37	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44557622--44557757	40	3.4	38	86	8	182	37	8	15	38	1.79
44557623--44557734	59	1.9	59	92	0	188	38	9	14	37	1.79
44557622--44557761	19	7.0	21	80	10	127	37	8	15	37	1.78
44561058--44561099	22	2.0	21	86	9	59	40	0	16	42	1.48
44564015--44564053	11	3.5	11	89	3	51	69	0	28	2	1.02
44565631--44565705	33	2.3	33	81	4	89	18	38	2	40	1.65
44577281--44577318	20	2.0	20	84	5	51	42	5	0	52	1.24
44579123--44579167	20	2.4	20	85	10	60	31	6	4	57	1.44
44579566--44579608	10	4.3	10	80	8	52	55	18	4	20	1.60
44579633--44579725	39	2.3	40	87	5	125	52	6	2	38	1.39
44586454--44586479	5	5.2	5	100	0	52	61	0	0	38	0.96
44591011--44591045	17	2.1	16	89	5	52	74	5	2	17	1.14
44591417--44591474	26	2.3	26	85	5	75	50	0	10	39	1.37
44592927--44593035	43	2.6	42	91	5	175	23	33	21	22	1.98
44593948--44593984	8	4.8	8	87	12	51	37	0	0	62	0.96
44593968--44594076	56	1.9	56	94	0	191	35	6	6	51	1.53
44601359--44601712	174	2.0	175	98	0	692	32	11	13	42	1.80
44602986--44603044	28	2.1	29	93	3	102	32	20	10	37	1.86
44606015--44606136	26	4.6	26	77	13	99	31	17	22	27	1.96
44624859--44624901	14	3.2	13	80	9	50	13	4	4	76	1.10
44628827--44628873	20	2.4	19	73	16	51	29	10	0	59	1.31
44631766--44631909	63	2.3	63	85	3	191	24	19	27	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44632520--44632574	28	2.0	28	96	0	101	23	12	16	47	1.81
44632525--44632574	16	3.4	16	71	21	54	22	14	16	48	1.81
44634102--44634167	27	2.5	26	72	2	60	48	4	28	18	1.67
44635311--44635345	16	2.2	16	95	5	63	71	0	0	28	0.86
44639051--44639173	62	2.0	62	91	4	203	23	14	13	48	1.79
44639105--44639658	244	2.3	244	83	4	665	29	13	14	41	1.85
44641142--44641198	29	2.0	29	96	0	105	31	5	7	56	1.49
44642541--44642628	25	3.5	24	84	4	113	18	29	21	30	1.97
44642534--44642628	50	1.9	50	91	4	156	17	29	20	32	1.96
44644846--44644910	31	2.0	33	85	11	91	4	23	1	70	1.14
44652793--44652864	36	2.0	36	100	0	144	25	5	16	52	1.65
44652794--44652873	36	2.3	35	89	6	101	27	5	15	52	1.63
44655934--44656022	3	30.0	3	72	15	69	61	3	6	28	1.37
44660130--44660261	41	3.1	41	71	8	129	26	22	21	29	1.99
44660274--44660485	82	2.6	83	99	0	417	22	21	23	32	1.98
44660417--44660696	83	3.3	83	86	4	359	23	22	22	32	1.98
44660292--44661652	44	31.6	43	77	8	894	24	24	21	30	1.99
44660411--44661477	174	6.2	174	87	4	1306	23	24	21	30	1.99
44660578--44661392	349	2.4	348	93	2	1367	24	24	21	29	1.99
44660919--44661720	437	1.8	438	95	1	1457	24	25	20	30	1.99
44660578--44661564	349	2.8	348	88	4	1192	24	24	21	30	1.99
44661356--44661722	175	2.1	175	92	0	608	23	26	20	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44660626--44661655	44	23.6	44	80	4	915	24	25	20	29	1.99
44662960--44663026	7	9.7	7	93	3	118	13	11	1	73	1.18
44662954--44663026	34	2.1	35	94	2	130	13	12	1	72	1.19
44663988--44664076	21	4.4	20	70	23	71	7	12	3	76	1.12
44663964--44664082	59	2.1	59	95	3	215	8	13	5	73	1.24
44667334--44667806	107	4.4	107	98	0	910	32	19	17	30	1.95
44670012--44670055	23	1.9	23	95	0	79	45	20	11	22	1.83
44679611--44679653	22	2.0	22	86	9	61	62	4	0	32	1.15
44680596--44680631	18	2.1	17	89	5	54	41	13	2	41	1.59
44690033--44690077	20	2.2	21	84	11	58	6	20	0	73	1.05
44694182--44694220	14	2.8	14	84	0	51	56	7	2	33	1.41
44696324--44697046	132	5.5	132	94	0	1185	28	25	18	27	1.98
44696418--44696875	44	10.4	43	62	10	122	27	25	18	27	1.98
44698420--44698619	44	4.5	44	65	12	113	29	26	18	26	1.98
44698459--44698652	43	4.4	43	66	8	131	28	25	17	28	1.98
44698403--44698823	132	3.2	132	95	0	725	28	24	18	28	1.98
44699661--44699738	41	1.9	41	94	0	138	26	14	10	48	1.75
44708656--44708701	23	2.0	23	100	0	92	4	13	13	69	1.33
44712807--44712839	16	2.1	16	88	11	50	9	27	0	63	1.24
44713587--44713811	92	2.4	90	83	4	263	36	20	9	32	1.86
44713602--44713843	92	2.7	91	82	5	260	33	20	11	34	1.88
44713602--44713822	91	2.4	91	83	4	257	33	20	9	35	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44713970--44713996	10	2.7	10	100	0	54	66	7	7	18	1.40
44717399--44717426	13	2.2	13	100	0	56	21	17	28	32	1.96
44719317--44719347	9	3.4	9	90	0	53	25	12	22	38	1.90
44719400--44719427	9	3.1	9	100	0	56	46	10	10	32	1.73
44724238--44724340	29	3.6	28	78	11	100	36	1	2	58	1.24
44724288--44724365	10	8.2	10	75	17	60	33	1	0	65	1.01
44724238--44724365	9	13.6	9	67	14	62	34	1	2	61	1.18
44727571--44727598	13	2.2	13	100	0	56	21	17	28	32	1.96
44728763--44728833	33	2.2	33	100	0	142	36	14	21	28	1.92
44729522--44729552	9	3.4	9	90	0	53	25	12	22	38	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145