genome.fa.s2.2.7.7.80.10.50.1000.53.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  53  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17279720--17279790	28	2.5	29	90	4	110	47	1	9	40	1.45
17286297--17286380	42	2.0	42	90	2	134	30	11	10	46	1.75
17289383--17289536	76	2.1	74	81	4	175	44	7	5	42	1.56
17301702--17301729	3	9.3	3	100	0	56	32	0	0	67	0.91
17302448--17302504	12	4.6	12	86	4	78	0	57	0	42	0.98
17302448--17302504	6	9.2	6	86	1	69	0	57	0	42	0.98
17302804--17302829	11	2.4	11	100	0	52	23	0	15	61	1.33
17305242--17305281	20	2.0	20	90	0	62	52	7	10	30	1.62
17305265--17305304	14	2.9	14	88	0	62	45	15	7	32	1.74
17305230--17305296	34	1.9	35	84	3	91	47	10	8	32	1.69
17305579--17305629	23	2.2	23	86	6	68	47	5	0	47	1.26
17305696--17305745	22	2.3	21	80	6	55	44	0	2	54	1.11
17306131--17306175	21	2.3	19	84	7	54	40	2	0	57	1.11
17307546--17307582	14	2.6	14	100	0	74	54	13	8	24	1.66
17311669--17311832	29	5.9	29	68	19	109	32	15	23	28	1.95
17311669--17311832	83	2.0	84	87	3	242	32	15	23	28	1.95
17312880--17312906	4	6.8	4	100	0	54	48	0	0	51	1.00
17317090--17317143	22	2.5	22	84	0	63	16	11	20	51	1.74
17321645--17321707	27	2.3	27	75	0	72	26	22	14	36	1.92
17323964--17324021	24	2.5	24	91	2	91	13	20	27	37	1.91
17333279--17333390	55	2.0	55	94	0	197	45	12	7	34	1.69
17334194--17334289	49	2.0	48	82	10	115	19	27	19	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17334227--17334294	25	2.8	25	77	2	75	19	26	20	33	1.96
17338313--17338365	16	3.3	16	72	0	61	58	7	16	16	1.60
17350806--17350872	29	2.3	30	89	7	102	58	10	2	28	1.46
17351664--17351688	2	12.5	2	100	0	50	48	0	0	52	1.00
17354536--17354560	2	12.5	2	100	0	50	48	0	0	52	1.00
17355376--17355542	86	2.0	85	83	3	210	34	17	10	37	1.84
17366106--17366148	18	2.4	18	100	0	86	23	27	32	16	1.96
17366217--17366373	4	37.8	4	73	18	94	68	0	29	1	0.97
17366208--17366360	23	6.7	23	73	16	95	66	0	32	1	1.00
17366221--17366353	18	7.8	16	76	18	101	67	0	30	1	1.00
17366258--17366404	5	28.8	5	67	16	54	70	0	28	0	0.92
17366221--17366368	38	3.8	37	77	17	140	68	0	30	1	0.98
17367259--17367302	22	2.0	22	95	0	79	54	6	22	15	1.65
17367563--17367589	8	3.4	8	100	0	54	66	0	11	22	1.22
17370061--17370130	34	2.1	34	94	0	122	38	11	10	40	1.75
17373146--17373184	20	2.0	21	85	10	55	66	10	0	23	1.22
17373317--17373393	27	2.9	27	86	7	95	20	29	25	23	1.99
17373452--17373496	22	2.0	22	100	0	90	55	0	8	35	1.31
17375753--17375797	22	2.0	22	100	0	90	55	0	8	35	1.31
17375844--17376150	153	2.0	154	99	0	607	40	16	11	31	1.83
17381799--17381834	17	2.1	17	89	5	54	41	0	0	58	0.98
17388421--17388462	21	2.0	22	90	4	68	54	4	0	40	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17388480--17388537	19	3.1	19	79	16	68	50	0	0	50	1.00
17389301--17389338	18	2.2	18	90	4	60	50	0	5	44	1.24
17389907--17389962	22	2.5	23	82	2	69	51	1	1	44	1.22
17389938--17389977	16	2.5	16	91	0	62	47	2	7	42	1.45
17393857--17393904	25	2.0	25	88	12	73	54	2	0	43	1.12
17395450--17395495	20	2.3	21	77	11	51	2	8	21	67	1.29
17399037--17399080	20	2.1	21	83	4	54	59	0	36	4	1.18
17413449--17413490	21	2.0	21	90	9	68	61	4	9	23	1.45
17414400--17414469	33	2.1	33	91	0	113	17	10	31	41	1.82
17414415--17414484	33	2.1	33	83	0	86	21	10	32	35	1.87
17414938--17414971	10	3.3	10	84	8	50	52	5	29	11	1.61
17416165--17416202	13	2.9	13	100	0	76	13	31	31	23	1.93
17418020--17418055	11	3.2	11	88	7	54	69	8	11	11	1.37
17442922--17442959	20	2.0	21	85	15	55	60	0	0	39	0.97
17449520--17449607	6	14.3	6	87	9	115	79	5	1	13	0.96
17451296--17451340	5	9.4	5	77	18	51	75	2	0	22	0.91
17451289--17451342	18	3.2	16	82	15	65	74	1	1	22	1.02
17451296--17451342	8	5.6	9	80	19	57	74	2	0	23	0.93
17451289--17451340	23	2.3	22	84	15	70	75	1	1	21	1.00
17458041--17458082	12	3.6	12	80	6	50	73	4	0	21	1.01
17458041--17458085	17	2.6	17	82	13	56	75	4	0	20	0.97
17459626--17459662	19	1.9	19	94	0	65	40	21	18	18	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17461000--17461029	5	6.2	5	92	7	53	0	23	0	76	0.78
17462054--17462082	2	14.5	2	100	0	58	51	48	0	0	1.00
17462429--17462466	11	3.3	12	78	14	53	23	26	5	44	1.74
17462430--17462479	22	2.3	22	86	6	66	22	24	8	46	1.78
17469408--17469441	17	2.0	17	88	0	50	38	2	0	58	1.13
17473212--17473236	6	4.2	6	100	0	50	52	16	0	32	1.44
17487622--17487843	109	2.0	108	95	0	399	34	17	29	18	1.94
17491323--17491564	50	4.8	50	86	1	324	19	30	22	26	1.98
17497579--17497705	63	2.0	64	98	1	247	43	20	6	29	1.76
17497726--17497755	2	15.0	2	100	0	60	50	0	0	50	1.00
17498262--17498397	41	3.3	41	88	0	200	29	21	15	33	1.94
17505640--17505677	18	2.2	18	85	4	51	15	2	10	71	1.25
17510388--17510449	28	2.3	27	86	8	81	30	25	22	20	1.98
17510539--17510645	26	4.1	26	83	4	135	35	23	19	21	1.96
17513074--17513113	18	2.2	18	86	0	53	20	17	17	45	1.86
17513067--17513119	12	4.4	12	75	0	52	18	16	18	45	1.86
17517089--17517136	20	2.4	20	92	0	78	8	20	33	37	1.83
17523504--17523552	22	2.2	22	78	7	55	48	18	14	18	1.80
17523544--17523713	32	5.4	32	77	4	157	37	20	21	20	1.95
17523757--17523820	27	2.4	27	84	7	78	32	20	23	23	1.98
17523988--17524111	27	4.7	27	85	4	137	25	22	17	34	1.96
17526351--17526398	20	2.4	21	89	6	73	22	0	0	77	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17526354--17526398	16	2.8	17	90	6	67	22	0	0	77	0.76
17526350--17526395	23	2.0	24	91	4	76	21	0	0	78	0.76
17527427--17527502	13	5.7	13	70	21	59	73	0	5	21	1.02
17538620--17538770	42	3.5	42	80	4	133	25	17	26	30	1.97
17538622--17538778	43	3.7	43	76	9	151	25	16	26	31	1.97
17542869--17543006	72	1.9	73	92	1	233	28	20	18	31	1.96
17543153--17543355	106	1.9	107	88	3	311	29	15	19	35	1.93
17544955--17545002	25	1.9	25	83	8	62	20	20	10	47	1.79
17544953--17545008	25	2.2	25	78	6	60	19	21	14	44	1.86
17545002--17545189	49	3.9	48	75	11	152	17	27	20	35	1.95
17545002--17545189	25	7.7	24	72	10	132	17	27	20	35	1.95
17548552--17548592	18	2.3	18	84	12	57	63	14	4	17	1.47
17550456--17550715	50	5.2	49	63	17	149	25	20	19	35	1.96
17550490--17550765	50	5.5	50	63	13	147	25	18	19	35	1.95
17550317--17550793	100	4.8	100	86	2	568	27	19	19	33	1.97
17550911--17551251	132	2.6	132	92	0	547	29	24	19	26	1.98
17551239--17551465	88	2.6	88	90	1	348	22	26	25	25	2.00
17551313--17551450	44	3.1	43	67	8	116	21	25	28	23	1.99
17553648--17553704	30	1.9	30	85	7	80	12	10	10	66	1.45
17554469--17554534	25	2.6	25	83	9	71	57	6	15	21	1.59
17558286--17558326	18	2.3	18	84	12	57	65	14	2	17	1.37
17558486--17558512	14	1.9	14	100	0	54	59	0	7	33	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17559660--17559685	11	2.4	11	100	0	52	84	0	0	15	0.62
17568744--17568777	5	6.8	5	87	12	52	79	0	0	20	0.73
17570678--17570736	20	3.0	20	75	9	66	11	25	20	42	1.86
17574906--17575111	3	68.7	3	100	0	412	0	33	0	66	0.92
17581269--17581306	19	2.0	19	90	10	60	28	2	0	68	1.03
17583402--17583459	14	4.3	14	85	10	68	18	12	6	62	1.52
17583425--17583464	11	3.4	11	89	10	53	27	7	10	55	1.60
17583513--17583546	12	2.8	12	90	0	50	26	11	2	58	1.47
17590706--17590733	12	2.3	12	100	0	56	53	0	0	46	1.00
17596707--17596748	14	3.1	14	89	3	68	38	14	0	47	1.44

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145