genome.fa.s2.2.7.7.80.10.50.1000.115.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  115  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38580076--38580207	42	3.2	41	72	18	139	41	5	4	48	1.46
38580607--38580631	1	25.0	1	100	0	50	100	0	0	0	0.00
38584885--38584997	55	2.0	55	85	8	149	61	2	5	30	1.32
38585162--38585245	39	2.2	38	77	10	89	33	2	0	64	1.07
38585141--38585245	40	2.6	39	73	15	99	35	2	0	61	1.11
38585218--38585265	19	2.5	20	82	6	71	35	0	0	64	0.94
38595384--38595433	24	2.1	24	100	0	100	20	20	24	36	1.95
38599620--38599663	21	2.1	21	95	0	79	9	15	34	40	1.79
38605499--38605535	18	2.1	18	100	0	74	35	10	27	27	1.90
38611834--38611970	43	3.2	43	82	4	177	27	13	23	35	1.93
38612909--38612938	11	2.7	11	94	0	51	50	0	0	50	1.00
38613975--38614007	17	2.0	17	88	5	50	39	0	12	48	1.40
38614888--38614942	26	2.2	25	80	9	58	38	3	18	40	1.68
38621614--38621754	43	3.3	43	84	0	174	31	14	19	34	1.92
38627231--38627275	13	3.5	13	85	8	65	20	4	0	75	0.97
38627916--38628034	62	1.9	62	86	1	168	38	13	12	35	1.83
38643937--38643967	15	2.1	15	93	0	53	19	32	0	48	1.49
38645097--38645144	8	6.2	8	83	9	55	43	0	0	56	0.99
38645149--38645303	77	2.0	77	97	0	292	37	18	5	38	1.75
38648869--38648920	24	2.2	24	85	0	68	53	9	3	32	1.51
38651426--38651450	2	12.5	2	100	0	50	48	0	0	52	1.00
38652373--38652419	23	2.0	23	100	0	94	17	21	40	21	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38654696--38655392	346	2.0	347	98	1	1362	38	13	16	32	1.87
38667256--38667409	73	2.1	73	90	1	238	40	17	5	36	1.72
38667404--38667430	7	3.9	7	100	0	54	14	40	0	44	1.46
38667815--38667913	45	2.2	45	77	13	105	26	23	12	38	1.90
38667891--38668004	45	2.6	44	84	2	156	22	21	15	39	1.92
38669771--38669820	26	2.0	27	88	11	79	44	6	4	46	1.47
38670196--38670239	23	1.9	23	86	9	63	43	0	2	54	1.12
38670229--38670258	6	4.8	6	95	4	51	50	0	0	50	1.00
38689093--38689134	18	2.5	17	85	11	59	33	14	16	35	1.89
38689178--38689216	16	2.5	16	87	4	53	38	15	7	38	1.76
38689260--38689312	26	2.0	26	100	0	106	39	15	11	33	1.83
38696467--38696498	2	16.0	2	100	0	64	50	0	0	50	1.00
38703717--38703789	17	4.4	16	71	13	58	61	4	2	31	1.29
38704137--38704206	21	3.3	21	75	16	63	22	1	8	67	1.26
38711168--38711435	92	2.9	91	86	3	369	34	24	16	24	1.95
38711168--38711435	91	2.9	90	86	4	367	34	24	16	24	1.95
38715985--38716033	22	2.1	24	81	7	57	57	18	10	14	1.65
38717265--38717498	109	2.2	107	86	6	330	23	19	26	30	1.98
38717144--38717385	76	3.2	75	88	8	373	23	18	26	31	1.97
38717339--38717731	151	2.7	147	90	4	487	23	19	27	29	1.98
38717374--38717731	75	4.7	75	85	3	461	23	19	27	29	1.98
38717190--38717569	184	2.1	184	88	3	559	23	18	26	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38717190--38717649	184	2.5	180	81	10	445	23	19	26	30	1.98
38718979--38719038	26	2.3	26	94	0	102	41	25	10	23	1.85
38721039--38721079	13	3.2	13	89	3	66	70	2	0	26	0.99
38721220--38721260	13	3.2	13	89	3	66	26	0	2	70	0.99
38722625--38722666	21	2.0	22	90	4	68	0	14	7	78	0.95
38726595--38726650	29	1.9	30	85	3	78	30	3	1	64	1.21
38727166--38727207	20	2.2	19	86	4	57	59	0	4	35	1.19
38727847--38727880	2	17.0	2	100	0	68	50	0	0	50	1.00
38727911--38727940	2	15.0	2	100	0	60	50	0	0	50	1.00
38730153--38730191	19	2.0	21	85	10	55	30	23	0	46	1.53
38732511--38732545	17	2.1	17	88	0	52	37	0	17	45	1.48
38740802--38740832	6	5.2	6	100	0	62	0	35	16	48	1.46
38742143--38742342	101	1.9	104	85	7	280	33	15	16	35	1.90
38745180--38745223	21	2.0	21	82	8	52	50	0	0	50	1.00
38745278--38745327	26	1.9	26	91	0	82	48	36	4	12	1.59
38745779--38745849	36	2.0	36	94	0	124	47	12	11	28	1.76
38751686--38751756	36	2.0	36	88	0	106	46	12	11	29	1.77
38755952--38755990	18	2.2	17	86	13	53	33	0	20	46	1.51
38756095--38756123	8	3.6	8	100	0	58	24	13	27	34	1.93
38756211--38756285	23	3.3	23	92	0	123	17	21	26	34	1.95
38770907--38771019	41	2.8	41	86	0	145	32	30	19	16	1.94
38772182--38772213	16	1.9	17	93	6	57	37	21	0	40	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38773366--38773424	28	2.0	31	83	9	79	49	3	1	45	1.28
38773963--38774012	26	2.0	25	96	4	91	50	34	4	12	1.58
38775629--38775654	7	3.7	7	100	0	52	15	11	11	61	1.57
38775623--38775661	14	2.7	14	80	4	51	20	7	7	64	1.45
38779408--38779531	40	3.1	40	77	5	117	38	17	18	25	1.92
38779597--38779625	13	2.2	13	100	0	58	41	27	20	10	1.85
38779611--38779721	41	2.7	40	91	2	177	25	22	28	23	1.99
38783909--38784001	43	2.2	43	88	0	132	21	18	30	30	1.97
38783973--38784026	25	2.2	25	93	0	90	22	22	25	29	1.99
38783930--38784069	68	2.1	68	91	2	228	23	20	27	28	1.99
38784169--38784211	22	2.0	22	95	0	77	41	27	20	9	1.83
38785421--38785487	31	2.2	31	84	7	84	37	7	10	44	1.67
38786186--38786219	16	2.1	16	89	10	52	41	0	8	50	1.34
38786964--38787269	95	3.0	95	80	15	355	42	13	17	25	1.87
38787278--38787378	48	2.2	46	92	3	166	34	12	11	40	1.80
38788112--38788153	19	2.2	19	86	0	57	52	14	4	28	1.62
38789037--38789166	40	3.3	39	80	7	147	36	23	21	19	1.95
38789211--38789367	41	3.8	42	88	4	248	21	23	23	31	1.98
38790666--38790728	20	3.1	20	77	11	74	50	0	4	44	1.23
38790669--38790728	10	5.8	10	78	11	59	48	0	5	46	1.24
38795486--38795800	43	7.3	43	80	1	290	23	16	29	29	1.96
38795865--38795906	22	1.9	22	90	0	66	42	26	21	9	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38809820--38809854	18	1.9	18	88	0	52	28	5	11	54	1.59
38810334--38810458	59	2.1	59	83	2	153	39	2	15	43	1.59
38816893--38816943	17	3.0	17	94	0	84	33	13	13	39	1.84
38817689--38817773	21	3.9	23	80	11	108	36	24	22	16	1.94
38817689--38817773	44	2.0	41	86	6	116	36	24	22	16	1.94
38819200--38819247	18	2.7	18	83	6	53	18	33	0	47	1.49
38819586--38819634	25	2.0	25	96	4	91	36	12	4	46	1.60
38821179--38821212	2	17.0	2	87	0	50	47	2	2	47	1.32
38822366--38822399	14	2.4	14	90	0	50	52	8	2	35	1.47
38823599--38823637	2	19.5	2	94	0	69	0	46	2	51	1.14
38826835--38826933	37	2.7	37	83	0	126	35	27	17	20	1.94
38835300--38835338	17	2.4	16	84	16	53	56	0	12	30	1.37
38838262--38838652	212	1.8	213	96	0	730	41	24	8	26	1.83
38839100--38839171	33	2.2	32	87	2	99	31	16	41	9	1.81
38844831--38844897	25	2.7	26	80	15	70	49	0	1	49	1.10
38851133--38851184	24	2.2	24	89	0	77	50	9	3	36	1.54
38855539--38855592	24	2.2	24	87	6	74	48	7	3	40	1.49
38855748--38855791	20	2.2	20	84	11	56	38	2	13	45	1.56
38857106--38857238	67	2.0	66	86	1	185	34	11	5	48	1.61
38859283--38859671	165	2.4	163	91	0	607	38	7	25	28	1.83
38859605--38860062	230	2.0	228	90	1	729	38	5	27	29	1.78
38860525--38860709	86	2.1	86	97	1	352	52	3	8	35	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38865753--38865780	6	4.7	6	100	0	56	17	32	0	50	1.47
38869305--38869347	19	2.2	20	84	12	63	32	18	0	48	1.48
38869513--38869622	45	2.4	45	90	0	166	42	20	18	18	1.89
38872021--38872069	23	2.1	23	96	0	89	32	0	10	57	1.32
38873980--38874031	3	17.3	3	100	0	104	32	0	0	67	0.91
38876755--38876801	24	1.9	24	86	4	67	36	0	38	25	1.56
38877475--38877586	27	4.1	27	88	2	145	41	19	18	20	1.91
38877496--38877600	27	3.9	27	91	2	149	38	20	20	20	1.94
38880502--38880560	26	2.3	26	96	0	109	32	23	5	38	1.77
38884128--38884175	21	2.3	21	85	3	62	20	35	2	41	1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145