genome.fa.s2.2.7.7.80.10.50.1000.31.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  31  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9991889--9991961	29	2.5	30	84	6	96	65	0	1	32	1.01
9995520--9997075	283	5.5	283	82	4	1719	39	13	8	38	1.74
9997914--9997969	28	2.0	28	100	0	112	17	14	21	46	1.84
9999792--9999838	21	2.2	21	92	0	76	38	0	48	12	1.41
9999804--9999832	15	1.9	15	100	0	58	41	0	48	10	1.37
9999834--9999865	15	2.1	15	100	0	64	28	12	40	18	1.87
10016368--10016428	30	2.1	29	84	3	77	36	1	3	59	1.24
10016395--10016789	194	2.0	195	99	0	774	38	8	10	42	1.70
10017498--10017531	17	1.9	18	88	5	52	58	20	2	17	1.51
10018120--10018166	24	2.0	22	84	8	58	65	0	4	29	1.11
10020325--10020366	9	4.7	9	84	0	57	35	19	11	33	1.88
10027485--10027515	9	3.4	9	90	0	53	38	22	12	25	1.90
10030197--10030244	23	2.1	23	84	0	60	68	14	0	16	1.21
10035709--10035758	20	2.7	18	70	24	50	48	4	2	46	1.32
10035630--10036192	103	5.5	103	98	0	1083	51	5	4	38	1.46
10035812--10035861	20	2.7	18	70	24	50	48	4	2	46	1.32
10035915--10035964	20	2.7	18	70	24	50	48	4	2	46	1.32
10036018--10036067	20	2.7	18	70	24	50	48	4	2	46	1.32
10037603--10037790	51	3.7	49	82	4	216	24	15	27	32	1.95
10037604--10037788	101	1.8	101	88	5	257	24	15	26	32	1.95
10037792--10037884	45	2.1	45	93	0	159	27	19	21	31	1.97
10040969--10041000	15	2.1	15	94	0	55	68	9	6	15	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10048791--10048832	22	1.9	22	90	9	68	30	14	21	33	1.93
10049295--10049325	16	1.9	16	93	0	53	48	16	9	25	1.76
10049944--10049993	21	2.4	21	78	15	68	40	10	2	48	1.48
10050079--10050198	41	2.9	40	83	2	132	30	22	18	29	1.97
10058397--10058507	47	2.4	47	83	3	134	27	23	12	36	1.91
10058455--10058629	90	1.9	90	81	0	206	26	21	16	35	1.94
10062775--10062821	23	2.0	23	83	0	58	21	6	12	59	1.55
10064462--10064494	14	2.4	14	90	10	50	21	12	0	66	1.23
10072614--10072643	15	2.1	15	93	6	53	6	26	0	66	1.16
10076236--10076274	17	2.2	19	86	9	55	38	0	0	61	0.96
10078038--10078077	16	2.5	16	87	0	53	47	2	10	40	1.50
10078080--10078139	20	3.0	20	69	13	59	48	6	3	41	1.46
10083583--10083708	54	2.3	54	91	2	209	42	15	11	31	1.81
10083647--10083685	19	2.1	19	90	0	60	46	12	12	28	1.79
10083621--10083706	26	3.2	26	62	12	66	41	15	12	30	1.84
10093523--10093906	30	12.9	30	86	5	539	32	9	16	41	1.81
10093542--10093887	60	5.8	60	97	0	622	32	10	15	41	1.81
10094095--10094205	41	2.7	40	84	6	134	29	17	24	28	1.97
10101612--10101639	13	2.2	13	100	0	56	28	7	7	57	1.52
10104222--10104254	11	2.9	12	86	13	52	33	0	0	66	0.92
10120124--10120201	36	2.1	39	88	7	117	26	14	6	52	1.65
10120275--10120338	27	2.4	27	89	2	103	51	3	4	40	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10120324--10120356	17	1.9	17	93	0	57	51	9	6	33	1.58
10120638--10120684	19	2.6	18	80	10	51	57	0	0	42	0.98
10127587--10127611	13	1.9	13	100	0	50	40	8	8	44	1.63
10130040--10130087	25	1.9	25	95	0	87	43	27	20	8	1.80
10134129--10134166	15	2.4	16	82	4	51	47	7	2	42	1.46
10139332--10139360	14	2.1	14	100	0	58	48	13	6	31	1.69
10140544--10140590	20	2.4	19	76	13	51	51	0	10	38	1.37
10140642--10140687	23	2.0	23	91	4	74	50	0	10	39	1.38
10140640--10140699	27	2.2	27	84	0	84	55	3	8	33	1.47
10142558--10142870	50	6.3	50	70	5	213	25	22	21	30	1.98
10142503--10142831	99	3.4	99	84	2	416	26	20	20	31	1.98
10142508--10142781	49	5.6	49	66	5	146	25	20	21	32	1.97
10142898--10142997	45	2.2	45	87	0	146	23	22	23	32	1.98
10143487--10143531	19	2.4	18	85	10	56	31	24	6	37	1.81
10143740--10143953	108	2.0	107	83	2	268	48	8	15	26	1.75
10152876--10153224	173	2.0	169	95	2	619	34	14	20	30	1.93
10153975--10154021	20	2.4	19	76	13	51	51	0	10	38	1.37
10154073--10154118	23	2.0	23	91	4	74	50	0	10	39	1.38
10154071--10154130	27	2.2	27	84	0	84	55	3	8	33	1.47
10154214--10154254	6	6.8	6	88	0	55	51	9	0	39	1.35
10154204--10154254	18	2.8	18	81	0	57	54	9	0	35	1.33
10155731--10155784	24	2.2	24	86	0	72	50	7	3	38	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10158800--10158851	24	2.2	24	85	0	68	50	11	3	34	1.57
10168664--10168723	30	2.0	30	86	3	84	51	3	5	40	1.40
10169616--10169642	14	1.9	14	100	0	54	25	14	29	29	1.95
10169703--10169731	7	4.3	7	91	8	51	13	0	27	58	1.36
10169703--10169731	13	2.1	14	93	6	51	13	0	27	58	1.36
10169702--10169771	20	3.5	20	72	14	54	15	1	35	47	1.55
10175498--10175649	40	3.8	40	79	6	173	36	19	19	23	1.95
10175495--10175648	80	1.9	80	84	6	204	35	19	20	24	1.95
10175550--10175647	20	4.9	20	65	0	61	37	20	18	23	1.94
10176844--10176938	43	2.2	43	86	1	129	28	12	25	33	1.92
10183130--10183242	33	3.5	32	77	12	106	46	15	17	20	1.85
10185647--10185722	9	8.4	9	81	5	91	42	22	10	25	1.85
10186000--10186024	13	1.9	13	100	0	50	12	0	48	40	1.40
10186238--10186303	22	3.0	22	73	4	62	40	19	27	12	1.87
10191462--10191537	24	3.2	24	79	7	91	14	39	6	39	1.72
10192663--10192702	17	2.4	17	86	0	53	47	2	0	50	1.14
10193115--10193155	21	2.0	21	90	9	66	56	2	14	26	1.51
10193115--10193155	22	1.9	21	90	5	64	56	2	14	26	1.51
10201115--10201151	16	2.3	16	90	0	56	27	2	0	70	1.01
10201789--10201841	24	2.2	24	93	3	90	67	7	0	24	1.16
10208030--10208054	2	12.5	2	100	0	50	52	0	0	48	1.00
10213549--10213582	18	1.9	17	88	5	50	47	23	0	29	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10217114--10217203	41	2.2	41	92	2	146	27	25	5	41	1.78
10217127--10217205	41	1.9	41	100	0	158	25	24	5	45	1.73
10222031--10222128	43	2.3	43	94	0	178	45	17	13	23	1.83
10222177--10222311	42	3.2	42	85	3	155	40	18	19	21	1.91
10227961--10227986	4	6.5	4	100	0	52	50	0	0	50	1.00
10233335--10233392	22	2.7	21	76	10	53	43	17	3	36	1.66
10233688--10233794	43	2.4	44	78	6	119	30	26	14	28	1.95
10242562--10242847	19	15.1	19	85	0	374	39	11	8	41	1.70
10242562--10242840	38	7.3	38	100	0	558	39	10	7	41	1.69
10244577--10244627	22	2.5	20	83	6	57	25	3	3	66	1.26
10250495--10250746	55	4.6	53	75	7	195	24	21	18	36	1.95
10250495--10250748	108	2.3	106	78	9	271	24	20	18	35	1.95
10250651--10250770	55	2.3	53	82	8	129	27	20	18	34	1.95
10256916--10256954	18	2.2	17	86	4	51	7	30	10	51	1.64
10258848--10258891	13	3.5	13	93	6	81	70	0	0	29	0.88
10258850--10258891	12	3.4	12	93	6	75	71	0	0	28	0.86
10258850--10258898	12	4.2	11	82	17	55	69	0	0	30	0.89
10258848--10258898	25	2.1	23	92	7	84	68	0	0	31	0.90
10268964--10269003	21	1.9	21	89	0	62	37	17	20	25	1.94
10270463--10270495	14	2.5	14	90	9	52	69	0	9	21	1.15
10274043--10274146	43	2.4	43	74	6	102	30	15	23	30	1.95
10281608--10281721	43	2.7	42	81	6	131	29	15	26	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10285178--10285282	31	3.4	31	71	7	88	39	0	9	50	1.41
10287029--10287133	31	3.4	31	71	7	88	39	0	9	50	1.41
10288470--10288519	3	16.7	3	100	0	100	66	0	0	34	0.92
10289335--10289378	23	2.0	22	90	4	70	56	2	6	34	1.38
10289481--10289558	38	2.1	36	83	11	95	52	1	7	38	1.38
10290066--10290142	19	3.7	21	80	13	68	40	16	6	36	1.75
10290066--10290123	22	2.6	22	81	7	64	41	17	5	36	1.72
10290102--10290171	19	3.7	19	98	0	131	35	17	11	35	1.85
10298778--10298834	26	2.2	26	87	0	78	22	19	14	43	1.86
10299070--10299166	48	2.0	48	82	4	115	40	18	4	37	1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145