genome.fa.s2.2.7.7.80.10.50.1000.34.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  34  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10956082--10956134	16	3.4	15	79	7	52	52	1	0	45	1.11
10956237--10956289	16	3.4	15	79	7	52	52	1	0	45	1.11
10956392--10956444	16	3.4	15	79	7	52	52	1	0	45	1.11
10957376--10957402	11	2.5	11	100	0	54	25	0	25	48	1.52
10960285--10960339	26	2.1	27	86	3	76	16	3	3	76	1.07
10960293--10960343	18	2.8	18	85	5	59	15	3	1	78	0.99
10960285--10960343	4	14.8	4	74	13	50	16	3	3	76	1.06
10960292--10960343	22	2.4	21	83	6	59	17	3	1	76	1.02
10960305--10960343	9	4.3	9	83	9	53	17	2	0	79	0.84
10965286--10965436	43	3.5	43	77	8	139	29	27	19	24	1.98
10981750--10981886	40	3.4	41	78	4	127	35	21	21	20	1.96
10981732--10981886	40	3.8	40	75	5	125	34	21	22	21	1.97
10981924--10982078	41	3.8	40	86	4	204	24	21	25	29	1.99
10984864--10984896	17	1.9	17	93	0	57	21	0	27	51	1.48
10986303--10986435	43	3.1	43	83	4	187	21	18	30	29	1.97
10995370--10995400	12	2.5	13	94	5	55	32	3	0	64	1.09
10995404--10995501	50	2.0	49	86	7	137	33	10	11	44	1.74
10998728--10998779	20	2.6	20	81	6	52	55	28	15	0	1.40
10999962--11000016	20	2.8	20	80	5	67	27	3	10	58	1.49
11001143--11001182	20	2.0	20	85	9	55	50	2	5	42	1.37
11002882--11003138	98	2.6	98	100	0	514	36	25	11	26	1.90
11011568--11011613	23	2.0	23	86	4	65	50	23	17	8	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11016768--11016811	19	2.3	19	84	7	54	59	0	15	25	1.37
11017750--11017812	8	7.4	8	73	19	56	36	0	17	46	1.49
11017719--11017786	27	2.6	27	90	2	102	38	1	13	47	1.52
11017724--11017866	73	2.0	69	80	11	155	33	0	15	50	1.49
11017827--11017948	60	2.0	60	85	3	165	30	0	14	54	1.47
11018493--11018639	19	7.1	19	69	24	77	55	13	0	31	1.39
11018472--11018567	26	3.9	25	84	15	137	56	13	0	30	1.38
11018496--11018565	21	3.1	21	88	12	95	58	12	0	28	1.35
11018424--11018567	47	2.9	48	78	18	154	54	15	0	29	1.46
11018635--11018701	27	2.5	27	90	0	107	13	31	23	31	1.93
11019222--11019263	21	2.0	22	86	13	61	33	14	11	40	1.82
11022410--11022472	31	2.0	31	100	0	126	28	6	15	49	1.69
11023471--11023512	22	2.0	22	90	4	68	45	14	4	35	1.66
11023973--11024006	14	2.3	15	90	5	52	44	17	5	32	1.73
11038514--11038567	27	2.0	27	85	7	74	66	0	0	33	0.92
11038514--11038567	9	6.0	9	75	20	51	66	0	0	33	0.92
11038669--11038712	22	1.9	24	86	9	65	56	13	2	27	1.49
11048549--11048602	27	2.0	27	85	7	74	64	0	1	33	1.04
11048704--11048747	22	1.9	24	86	9	65	56	13	2	27	1.49
11055689--11055774	44	1.9	44	86	6	120	38	25	4	31	1.76
11055921--11055950	14	2.1	15	93	6	53	33	6	6	53	1.53
11057647--11057751	43	2.5	43	87	4	142	35	29	17	18	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11061892--11062004	41	2.8	41	97	0	208	30	22	23	24	1.99
11062719--11062775	23	2.5	24	77	13	66	66	7	0	26	1.17
11062804--11062867	3	21.7	3	73	9	51	68	4	3	23	1.23
11062809--11062861	22	2.5	21	87	6	72	67	3	3	24	1.23
11068760--11068811	20	2.8	18	73	21	54	51	3	1	42	1.31
11071980--11072016	13	2.8	13	91	4	56	37	10	21	29	1.88
11072005--11072046	9	4.7	9	84	0	57	30	9	21	38	1.85
11072009--11072043	18	1.9	18	100	0	70	28	5	22	42	1.76
11074841--11074914	29	2.6	26	75	14	67	52	2	0	44	1.15
11078521--11078573	12	4.7	12	81	13	67	45	35	18	0	1.50
11078521--11078573	6	9.3	6	80	12	58	45	35	18	0	1.50
11079299--11079358	3	20.0	3	91	0	66	41	33	23	1	1.64
11079303--11079361	15	3.9	15	88	0	82	44	33	20	1	1.62
11079312--11079361	18	2.8	18	87	0	73	46	34	18	2	1.60
11079593--11079755	82	2.0	81	96	3	301	36	11	7	44	1.69
11080900--11080966	8	7.7	9	75	11	52	73	1	22	2	1.06
11088486--11088518	16	2.0	17	88	5	50	45	6	6	42	1.53
11088667--11088721	19	2.8	20	78	8	60	41	1	5	50	1.36
11088657--11088722	20	3.3	19	75	12	53	39	3	6	51	1.42
11096068--11096275	103	2.0	104	99	0	409	44	15	6	33	1.73
11098960--11099015	22	2.4	24	73	8	62	73	10	3	12	1.22
11101976--11102117	71	2.0	71	94	0	248	35	19	17	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11102738--11102768	3	10.3	3	100	0	62	67	0	0	32	0.91
11104564--11104723	44	3.6	44	82	2	205	26	23	21	28	1.99
11104564--11104727	89	1.9	88	88	3	249	26	23	20	28	1.99
11104943--11105011	35	1.9	36	88	2	104	28	20	23	27	1.99
11104945--11105021	35	2.2	36	83	2	93	27	22	22	28	1.99
11104979--11105136	83	1.9	82	86	1	226	29	22	18	30	1.97
11104844--11105092	118	2.1	118	96	0	453	29	21	20	28	1.98
11105133--11105975	100	8.4	100	87	0	1166	24	20	22	32	1.98
11106853--11106899	20	2.2	22	88	7	71	0	14	4	80	0.85
11106847--11106898	28	1.9	26	84	7	68	0	15	3	80	0.85
11110130--11110271	71	2.0	71	95	0	257	35	19	16	28	1.93
11111106--11111223	51	2.3	51	80	14	127	56	0	6	35	1.32
11115461--11115502	20	2.1	20	86	0	57	47	0	7	45	1.30
11119888--11119929	20	2.1	20	86	0	57	47	0	7	45	1.30
11122522--11122561	20	2.0	20	90	0	62	27	10	12	50	1.72
11122507--11122573	34	1.9	35	87	3	100	32	8	11	46	1.72
11124085--11124136	24	2.2	24	85	0	68	53	9	3	32	1.51
11126057--11126108	24	2.2	24	82	0	59	53	7	5	32	1.53
11154686--11154734	24	2.0	24	100	0	98	26	24	24	24	2.00
11154693--11154745	24	2.2	24	86	6	72	28	30	20	20	1.98
11157440--11157477	20	2.0	19	85	10	51	81	0	15	2	0.80
11158898--11159272	89	4.2	88	89	1	552	28	20	23	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11158945--11159604	177	3.7	176	80	3	599	28	21	22	27	1.99
11159211--11159604	89	4.4	89	86	1	470	28	22	22	26	1.99
11158898--11159605	266	2.7	264	78	4	674	28	21	22	27	1.99
11159862--11160075	44	4.8	44	76	8	146	31	18	21	28	1.97
11159869--11160031	88	1.9	88	82	0	209	32	18	20	28	1.96
11163684--11163728	6	7.7	6	80	5	56	37	2	8	51	1.46
11163684--11163728	12	3.8	12	94	2	74	37	2	8	51	1.46
11165050--11165137	35	2.5	36	77	1	88	40	13	15	29	1.86
11166438--11166793	133	2.7	133	84	1	462	37	13	19	30	1.90
11166782--11166949	39	4.3	39	80	4	142	41	13	22	23	1.89
11166804--11166947	78	1.8	78	83	0	189	41	13	22	22	1.88
11171741--11171850	54	2.0	54	96	0	202	24	17	19	39	1.92
11181295--11181563	69	3.9	69	80	2	290	34	26	19	19	1.96
11181295--11181573	137	2.0	137	82	2	337	34	26	19	20	1.96
11181324--11181583	138	1.9	137	82	3	326	34	27	18	19	1.96
11181666--11181982	58	5.5	58	92	1	483	32	21	12	33	1.91
11189121--11189171	2	25.5	2	95	0	93	49	0	0	50	1.00
11190255--11190409	43	3.6	43	79	9	167	29	24	18	27	1.98
11194947--11195063	25	4.8	24	71	16	80	30	17	29	22	1.96
11195004--11195128	24	5.1	24	75	7	101	35	19	26	19	1.95
11197165--11197192	13	2.2	13	100	0	56	17	46	21	14	1.84
11201790--11201838	9	5.4	9	90	0	80	26	12	22	38	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11201788--11201838	18	2.8	18	100	0	102	29	11	21	37	1.89
11201893--11201929	9	4.1	9	86	13	58	45	10	10	32	1.74
11210393--11210432	21	1.9	21	85	10	55	35	5	37	22	1.76
11210503--11210604	36	2.9	36	74	12	106	29	5	15	49	1.68
11210601--11210780	96	1.9	96	87	2	263	30	17	21	31	1.96
11210599--11210783	48	3.9	48	85	4	239	30	17	21	30	1.96
11210737--11210870	42	3.1	42	81	7	162	29	13	23	33	1.93
11219136--11219270	30	4.6	29	77	5	101	43	20	11	23	1.85
11219136--11219207	28	2.5	27	82	10	81	41	19	12	26	1.87
11221630--11221690	31	2.0	31	83	0	77	72	3	6	18	1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145