genome.fa.s2.2.7.7.80.10.50.1000.70.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  70  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23266667--23266718	24	2.3	22	86	6	68	13	3	9	73	1.23
23266814--23266855	21	2.0	22	85	4	59	11	9	4	73	1.22
23272172--23272265	47	2.0	48	85	6	129	32	28	15	22	1.95
23278063--23278103	10	4.3	10	90	9	68	60	0	0	39	0.96
23292227--23292257	5	6.0	5	92	7	53	19	3	0	77	0.90
23292227--23292262	10	3.5	11	92	7	51	19	5	0	75	1.00
23293380--23293418	20	2.0	20	90	10	62	51	30	5	12	1.62
23296100--23296149	25	2.0	25	88	0	73	34	26	4	36	1.75
23296505--23296558	26	2.1	26	100	0	108	46	11	14	27	1.79
23296828--23297024	98	2.0	99	98	1	387	25	12	18	44	1.84
23300049--23300223	45	4.0	44	74	16	177	31	5	29	33	1.81
23300049--23300202	84	1.8	84	94	0	272	32	6	29	31	1.83
23300387--23300421	18	2.0	17	88	5	52	54	0	0	45	0.99
23302860--23302916	28	2.0	28	96	0	105	49	14	33	3	1.60
23314827--23314893	25	2.7	25	80	0	71	31	16	26	25	1.96
23314965--23315090	26	5.0	26	72	13	93	33	23	25	18	1.97
23315531--23315564	15	2.2	15	89	5	50	26	20	8	44	1.81
23318512--23318559	24	2.0	24	100	0	96	20	29	29	20	1.98
23328798--23328854	24	2.4	24	87	0	87	31	10	26	31	1.90
23329214--23329474	44	6.1	41	74	8	157	31	22	20	26	1.98
23332905--23332964	27	2.2	27	82	11	70	25	0	8	66	1.19
23337505--23337564	28	2.1	28	81	6	68	26	10	13	50	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23337504--23337564	29	2.1	28	82	8	70	26	9	13	50	1.72
23337761--23337884	51	2.4	51	90	4	196	29	27	0	42	1.56
23337885--23337951	31	2.2	31	89	5	100	35	1	0	62	1.04
23339712--23339864	71	2.2	71	96	0	279	35	3	14	47	1.61
23344160--23344254	42	2.3	40	80	10	104	16	32	29	21	1.95
23348383--23348485	51	2.0	51	88	3	154	40	12	18	28	1.87
23348383--23348485	25	4.0	26	93	1	156	40	12	18	28	1.87
23354451--23354517	30	2.2	30	83	0	80	46	10	4	38	1.59
23358981--23359318	166	2.0	167	98	0	660	28	20	13	38	1.90
23361780--23361849	30	2.3	30	92	0	113	37	14	12	35	1.84
23368834--23368892	29	2.0	29	93	0	100	30	13	20	35	1.91
23378910--23378979	27	2.4	29	76	9	72	31	14	8	45	1.75
23379078--23379290	106	2.0	107	99	0	419	31	15	8	43	1.78
23381494--23381590	45	2.2	45	90	0	149	38	9	30	21	1.85
23385294--23385327	17	1.9	18	88	5	52	8	11	23	55	1.63
23387891--23388102	105	2.0	106	99	0	417	49	7	4	38	1.52
23427513--23427647	33	3.8	33	72	21	119	21	19	26	32	1.97
23427480--23427645	76	2.2	75	91	3	262	22	19	26	31	1.98
23438269--23438612	27	12.8	27	78	8	310	43	17	14	24	1.86
23438269--23438627	54	6.7	54	79	6	363	43	16	15	24	1.87
23438270--23438576	81	3.8	81	83	6	354	44	17	14	24	1.85
23438269--23438612	81	4.3	81	80	8	344	43	17	14	24	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23438838--23438905	26	2.6	26	83	0	91	19	19	23	38	1.93
23439019--23439094	30	2.6	29	87	4	100	22	27	21	28	1.99
23439019--23439113	30	3.2	30	79	2	95	22	25	22	30	1.99
23444755--23445100	27	12.8	27	75	12	257	41	18	16	23	1.89
23444755--23445120	54	6.8	54	78	9	336	41	18	16	23	1.90
23444756--23445115	81	4.4	80	77	6	368	41	17	16	23	1.89
23445310--23445416	26	4.1	26	76	7	101	21	22	21	34	1.97
23445310--23445416	52	2.1	51	84	7	135	21	22	21	34	1.97
23445519--23445598	28	2.8	28	88	5	106	22	17	21	38	1.93
23445520--23445608	30	3.1	28	87	8	108	23	20	20	35	1.95
23448411--23448457	20	2.3	20	78	7	51	70	0	23	6	1.10
23449692--23449735	11	4.0	11	82	11	63	29	2	0	68	1.02
23449692--23449745	10	5.1	10	84	10	63	29	1	0	68	1.00
23453285--23453323	19	2.1	19	90	0	60	48	12	10	28	1.74
23453273--23453337	33	1.9	34	87	3	96	44	12	9	33	1.74
23453307--23453346	14	2.9	14	84	0	53	42	17	7	32	1.77
23456282--23456396	46	2.5	46	91	0	185	40	26	19	13	1.89
23456596--23456860	27	9.8	27	84	2	291	21	14	19	44	1.86
23462363--23462445	38	2.2	38	91	0	130	39	30	18	12	1.86
23462413--23462466	22	2.5	22	93	0	90	46	31	11	11	1.74
23462375--23462490	60	1.9	60	92	0	196	44	29	13	12	1.80
23465400--23465450	27	1.9	26	84	11	68	54	13	9	21	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23465719--23465763	23	2.0	23	81	0	54	62	4	4	28	1.34
23467704--23467935	44	5.0	44	68	13	144	26	20	19	33	1.96
23467647--23467926	142	2.0	142	92	1	472	27	20	18	33	1.96
23482035--23482060	12	2.2	12	100	0	52	23	15	0	61	1.33
23482333--23482378	19	2.4	19	85	7	58	41	10	23	23	1.86
23486158--23486202	23	2.0	23	81	0	54	62	4	4	28	1.34
23494826--23494974	38	4.0	37	87	3	201	38	24	19	17	1.93
23494826--23494974	75	2.0	75	86	2	210	38	24	19	17	1.93
23500099--23500142	22	2.0	22	100	0	88	40	13	9	36	1.76
23504744--23504824	23	3.5	23	64	21	60	43	1	20	34	1.60
23504728--23504822	47	2.0	47	100	0	190	45	2	16	35	1.60
23512450--23512502	23	2.4	22	83	3	61	62	0	1	35	1.06
23514972--23515040	31	2.2	31	100	0	138	18	17	17	46	1.85
23518320--23518428	37	2.9	37	80	8	132	38	31	14	15	1.88
23518282--23518424	74	1.9	74	86	0	205	38	30	14	16	1.89
23519976--23520293	136	2.3	138	82	4	379	29	22	21	26	1.99
23521320--23521358	14	2.7	15	92	4	62	46	5	0	48	1.24
23522003--23522045	19	2.3	19	83	0	50	27	0	4	67	1.10
23533628--23533716	25	3.6	24	80	6	90	33	20	24	21	1.97
23533865--23533917	20	2.5	22	77	20	60	47	9	7	35	1.64
23536750--23536798	21	2.3	21	96	0	89	16	10	22	51	1.74
23541959--23541983	2	12.5	2	100	0	50	52	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23542416--23542503	46	2.0	45	86	6	126	44	22	15	17	1.86
23542416--23542503	23	4.0	23	82	5	110	44	22	15	17	1.86
23548169--23548224	22	2.5	21	81	18	60	53	10	1	33	1.46
23548362--23548439	26	3.2	26	70	15	76	41	26	11	20	1.87
23548362--23548461	47	2.1	46	85	10	132	40	26	12	22	1.88
23548432--23548471	21	1.9	21	84	0	53	40	25	12	22	1.89
23561573--23561626	25	2.2	25	83	6	65	5	12	33	48	1.65
23568011--23568094	25	3.4	25	70	11	73	29	17	21	30	1.96
23571717--23571803	35	2.3	38	84	15	135	41	1	6	50	1.36
23571726--23571798	35	2.1	35	100	0	146	42	0	8	49	1.32
23577112--23577243	24	5.7	23	75	13	119	42	1	1	54	1.18
23577109--23577238	71	1.9	68	87	4	188	43	1	1	53	1.19
23577217--23577333	62	1.9	59	81	5	135	41	5	4	48	1.45
23584530--23584717	75	2.5	76	80	5	211	38	19	12	29	1.88
23584530--23584734	38	5.4	38	75	4	189	39	18	12	29	1.87
23584597--23584747	77	2.0	75	85	5	205	41	19	9	29	1.84
23588480--23588538	29	2.0	29	90	0	91	33	18	18	28	1.95
23588501--23588760	38	6.8	38	74	5	204	41	19	13	26	1.88
23588499--23588735	113	2.1	115	85	4	327	40	20	13	25	1.88
23589375--23589475	44	2.3	44	96	0	184	19	1	24	53	1.56
23589398--23589466	21	3.2	21	62	22	52	21	2	21	53	1.59
23604462--23604511	26	2.0	25	88	7	75	26	6	0	68	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23614563--23614593	15	2.1	15	100	0	62	51	19	12	16	1.76
23619683--23619708	11	2.4	11	100	0	52	38	23	7	30	1.83
23623309--23623659	172	2.0	173	98	1	679	31	7	9	51	1.62
23626649--23626954	43	7.1	43	87	1	364	25	31	18	24	1.98
23629272--23629371	49	2.1	49	96	1	184	28	21	14	37	1.91
23632009--23632070	7	8.7	7	83	3	52	35	43	0	20	1.53
23632019--23632065	14	3.4	14	87	0	58	29	48	0	21	1.50
23632019--23632070	21	2.4	21	80	3	59	32	46	0	21	1.52
23633135--23633384	41	6.1	41	81	6	238	30	28	19	21	1.98
23635196--23635286	27	3.3	27	87	4	121	36	20	18	24	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145