genome.fa.s2.2.7.7.80.10.50.1000.126.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  126  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42058181--42058234	20	2.8	19	83	5	72	50	5	27	16	1.68
42059049--42059298	24	10.7	24	71	13	155	34	6	4	54	1.47
42059048--42059199	47	3.3	46	75	10	123	33	6	3	56	1.41
42059077--42059198	46	2.7	46	76	13	117	35	7	2	54	1.41
42059123--42059276	69	2.2	69	79	8	172	35	7	4	53	1.49
42059605--42059721	43	2.7	43	92	1	191	31	26	17	23	1.97
42059599--42059735	43	3.2	42	83	5	168	34	27	16	21	1.95
42064380--42064424	7	6.4	7	78	0	54	35	44	0	20	1.51
42064380--42064420	21	2.0	21	90	9	66	34	46	0	19	1.50
42064467--42064510	20	2.2	20	88	8	63	36	47	0	15	1.46
42064388--42064563	88	2.0	92	84	4	234	42	29	1	26	1.63
42064733--42064868	40	3.4	40	77	6	125	19	22	22	36	1.95
42065212--42065237	12	2.2	12	100	0	52	38	0	7	53	1.30
42064919--42065348	226	1.9	224	95	1	783	25	9	8	56	1.60
42066815--42066844	12	2.4	13	94	5	53	66	6	6	20	1.38
42073296--42073536	49	4.7	50	77	4	180	25	26	20	27	1.99
42073352--42073536	50	3.6	49	78	7	154	24	28	20	26	1.99
42076453--42076543	45	2.0	45	97	0	173	29	19	25	25	1.99
42082793--42083034	50	4.8	50	78	5	245	29	28	16	25	1.96
42082792--42083031	101	2.4	101	84	1	293	30	28	16	25	1.96
42083997--42084032	13	2.8	13	95	0	63	36	13	13	36	1.85
42085133--42085225	42	2.2	41	84	1	114	30	18	21	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42090496--42090602	37	2.9	37	68	15	112	34	21	20	23	1.97
42096399--42096428	16	1.9	15	93	6	51	36	13	23	26	1.92
42097758--42097934	42	4.2	42	83	0	212	29	20	19	30	1.97
42097758--42097915	84	1.9	83	89	1	244	30	20	18	31	1.96
42105500--42105569	22	3.0	21	67	23	52	44	7	0	48	1.30
42105553--42105584	15	2.1	15	94	0	55	50	6	0	43	1.27
42105443--42105569	48	2.6	48	92	4	204	41	8	0	48	1.39
42107728--42107757	16	1.9	16	93	6	53	30	0	20	50	1.49
42126672--42126701	16	1.9	16	93	6	53	30	0	20	50	1.49
42129219--42129250	16	2.0	16	93	0	55	15	28	25	31	1.96
42139896--42139933	19	2.0	19	89	0	58	44	23	26	5	1.74
42144851--42144949	27	3.7	26	81	9	92	46	22	14	17	1.83
42144860--42144977	54	2.2	54	81	7	141	42	22	15	19	1.89
42144860--42144976	27	4.3	26	78	6	90	42	23	15	18	1.88
42145153--42145207	26	2.1	26	82	0	65	20	23	20	36	1.95
42145302--42145393	28	3.3	28	78	0	112	27	20	20	31	1.98
42151774--42151861	27	3.3	26	77	3	86	43	20	18	18	1.89
42151794--42151872	27	2.9	27	76	10	81	39	21	18	20	1.93
42155431--42155473	19	2.3	19	95	0	77	37	25	4	32	1.77
42166316--42166418	48	2.2	47	87	1	143	37	23	11	27	1.89
42166463--42166497	17	2.0	18	94	5	63	34	22	2	40	1.69
42172175--42172222	25	2.0	22	84	11	60	47	20	0	31	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42172154--42172288	39	3.4	39	86	6	182	46	21	2	29	1.63
42185135--42185175	20	2.1	20	86	4	57	12	4	7	75	1.16
42190931--42190960	7	4.4	7	91	8	53	73	0	13	13	1.10
42190928--42190960	13	2.5	13	100	0	66	69	0	15	15	1.19
42192316--42192627	44	7.1	43	65	15	147	32	19	23	24	1.98
42192202--42193154	131	7.3	129	91	1	1225	31	20	23	24	1.98
42193165--42193366	44	4.7	43	71	9	142	28	19	23	28	1.98
42195293--42195348	27	2.0	27	83	13	69	37	5	3	53	1.41
42199918--42199942	7	3.6	7	100	0	50	0	28	0	72	0.86
42200414--42200438	6	4.2	6	100	0	50	16	0	32	52	1.44
42200725--42200909	50	3.7	49	79	6	174	32	16	20	30	1.94
42202546--42202594	16	3.2	16	66	16	50	48	8	12	30	1.69
42202535--42202594	29	2.1	29	100	0	120	45	6	16	31	1.74
42203407--42203457	17	2.8	18	70	21	52	37	33	9	19	1.85
42208249--42208285	9	4.1	9	92	0	65	29	10	13	45	1.77
42208340--42208370	9	3.4	9	90	0	53	38	22	12	25	1.90
42215019--42215440	138	3.1	138	92	0	702	40	8	5	44	1.58
42215128--42215344	71	3.1	71	61	21	159	38	9	5	46	1.60
42216213--42216253	18	2.3	18	95	4	75	34	21	12	31	1.91
42222082--42222153	25	2.9	24	91	4	108	18	27	31	22	1.97
42222097--42222138	13	3.3	13	73	6	50	16	30	30	21	1.95
42225161--42225222	25	2.5	25	86	0	79	30	25	12	30	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42225189--42225250	25	2.5	25	86	0	79	24	24	22	29	1.99
42238816--42238891	39	1.9	39	100	0	152	35	18	5	40	1.73
42241443--42241533	24	3.8	23	78	10	85	32	5	7	53	1.52
42250747--42250800	21	2.8	20	75	8	58	27	35	5	31	1.80
42265531--42265625	25	3.8	25	74	10	95	29	20	21	29	1.98
42268846--42268870	11	2.3	11	100	0	50	72	0	0	28	0.86
42269172--42269298	40	3.2	40	88	0	191	32	18	29	20	1.96
42269235--42269298	20	3.2	20	65	8	58	28	20	32	18	1.96
42271947--42272034	35	2.5	35	79	3	88	27	27	20	25	1.99
42277742--42277845	41	2.5	42	80	6	124	30	22	24	23	1.99
42279852--42280035	27	6.9	27	68	2	111	25	21	11	40	1.88
42279852--42280035	53	3.5	53	83	0	224	25	21	11	40	1.88
42280097--42280267	54	3.2	52	68	24	147	25	30	17	26	1.97
42280067--42280294	108	2.1	108	97	0	429	26	29	17	27	1.97
42280122--42280288	54	3.1	54	68	24	161	25	30	16	27	1.96
42280150--42280353	27	7.6	27	68	15	93	27	29	15	27	1.96
42280263--42280356	27	3.5	27	78	5	100	28	26	12	31	1.93
42288480--42288813	50	6.6	50	77	8	266	24	28	19	27	1.99
42296881--42296930	25	2.0	25	100	0	100	44	8	24	24	1.80
42300055--42300211	78	2.0	79	98	1	307	36	21	9	31	1.86
42306305--42306377	38	1.9	38	94	0	128	41	12	12	34	1.80
42310503--42310546	16	2.8	16	85	0	61	38	2	27	31	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42314571--42314711	59	2.4	57	86	8	187	51	0	2	45	1.18
42314592--42314699	32	3.5	32	71	15	93	54	0	0	43	1.12
42314635--42314713	26	3.3	25	68	24	62	49	0	1	49	1.09
42314572--42314731	58	2.7	58	84	8	175	52	0	1	45	1.16
42315492--42315534	6	7.7	6	89	5	56	18	2	0	79	0.85
42316688--42316718	16	1.9	16	93	0	53	48	3	0	48	1.17
42318458--42318507	22	2.3	22	89	6	75	32	12	12	44	1.78
42318793--42318824	13	2.5	13	100	0	64	43	6	0	50	1.27
42319353--42319399	20	2.4	19	83	16	60	23	2	2	72	1.06
42319554--42319614	30	2.0	30	87	0	86	34	4	18	42	1.71
42325682--42326579	495	1.9	469	87	8	1314	33	11	15	39	1.83
42327999--42328056	25	2.4	25	80	8	66	12	10	27	50	1.72
42334893--42334962	25	2.8	25	77	0	68	28	21	24	25	1.99
42339616--42339653	7	5.7	7	84	12	53	39	0	47	13	1.42
42341425--42341475	25	2.0	25	96	0	93	21	11	25	41	1.87
42344583--42344630	21	2.4	18	75	24	51	62	8	4	25	1.41
42346264--42346363	44	2.3	45	82	5	123	28	20	20	32	1.97
42346392--42347249	51	16.8	51	82	3	895	28	23	17	30	1.97
42346351--42346633	150	1.9	150	87	1	415	28	22	16	31	1.96
42348475--42348589	48	2.4	49	85	4	155	11	20	19	48	1.79
42349015--42349084	7	9.4	7	86	6	68	2	1	14	81	0.88
42349015--42349084	9	8.2	8	75	16	61	2	1	14	81	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42349015--42349093	26	3.1	24	82	13	95	3	2	12	81	0.94
42349023--42349071	19	2.5	20	84	12	66	4	0	14	81	0.83
42353504--42353537	16	2.1	16	94	0	59	47	20	11	20	1.81
42355121--42355194	21	3.5	20	75	21	62	56	8	8	27	1.56
42364875--42364910	16	2.2	17	90	5	56	36	0	52	11	1.37
42372080--42372149	16	4.1	16	71	16	59	41	4	1	52	1.30
42379174--42379263	6	15.2	6	78	11	62	70	3	3	23	1.18
42379182--42379262	25	3.3	25	84	1	101	70	3	3	22	1.19
42379197--42379263	19	3.6	19	77	2	73	71	1	4	22	1.12
42389449--42389946	27	18.6	25	80	10	451	41	20	17	20	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145