genome.fa.s2.2.7.7.80.10.50.1000.62.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  62  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20409121--20409328	106	2.0	105	96	0	380	21	10	15	52	1.72
20409777--20409984	103	2.0	104	96	0	382	21	11	9	58	1.59
20411605--20411662	23	2.5	23	91	0	89	44	18	18	17	1.87
20413352--20413456	44	2.5	40	76	15	113	31	29	4	34	1.78
20413350--20413459	45	2.6	44	81	8	131	31	29	5	33	1.80
20413438--20413486	16	3.1	16	93	0	80	26	36	2	34	1.68
20417936--20418022	25	3.5	24	85	1	111	22	25	22	28	1.99
20430429--20430501	21	3.4	21	79	9	85	34	8	34	23	1.84
20448705--20448861	78	2.0	78	87	4	228	31	13	21	33	1.92
20455292--20455448	78	2.0	78	89	0	242	31	13	22	33	1.92
20472513--20472544	11	2.9	11	100	0	64	46	6	0	46	1.27
20472535--20472596	26	2.3	26	86	2	79	35	1	1	61	1.16
20472638--20472795	80	2.0	82	87	2	230	21	24	32	21	1.98
20474593--20474673	5	15.6	5	74	8	56	16	4	4	74	1.17
20491208--20491386	75	2.4	74	83	5	252	30	20	21	27	1.98
20491634--20491728	7	13.3	7	75	12	50	23	1	30	45	1.60
20491634--20491731	14	6.8	14	74	14	56	22	1	30	45	1.59
20491677--20491725	14	3.4	14	88	2	71	18	0	32	48	1.48
20492861--20493006	20	7.3	20	70	17	97	14	33	17	34	1.90
20492751--20493006	40	6.4	40	83	0	278	17	32	15	35	1.91
20494514--20494580	30	2.2	30	86	0	89	23	22	29	23	1.99
20499779--20499812	6	5.7	6	100	0	68	35	0	47	17	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20499779--20499818	18	2.2	18	90	0	62	37	0	42	20	1.52
20501213--20501241	14	2.0	15	93	6	51	34	13	6	44	1.71
20514893--20514918	5	5.2	5	100	0	52	19	0	0	80	0.71
20516940--20516978	20	2.0	20	100	0	78	30	5	0	64	1.15
20522020--20522362	177	1.9	177	98	0	668	36	19	18	25	1.94
20527750--20527790	21	2.0	21	85	4	57	48	4	24	21	1.69
20534884--20535845	160	6.0	160	99	0	1915	34	17	23	24	1.96
20541851--20541927	32	2.4	32	95	2	138	62	5	2	29	1.30
20542768--20542884	61	1.9	61	94	0	207	49	5	1	43	1.34
20544112--20544244	71	1.9	71	85	3	187	34	27	12	25	1.92
20556048--20556085	18	2.1	18	90	0	58	23	28	31	15	1.96
20568500--20568741	50	4.7	50	75	6	175	23	27	21	27	1.99
20569170--20569302	56	2.5	50	81	7	140	24	28	21	25	1.99
20568609--20569732	561	2.0	561	100	0	2248	32	22	10	34	1.89
20579381--20579435	28	2.0	28	92	0	92	47	16	10	25	1.79
20580409--20580468	31	2.0	30	83	3	75	23	21	3	51	1.62
20580435--20580487	28	2.0	28	85	7	74	30	16	3	49	1.64
20582630--20582857	113	2.0	114	99	0	449	36	6	6	50	1.52
20585173--20585200	14	2.0	14	100	0	56	35	7	14	42	1.73
20585174--20585204	14	2.2	14	94	0	53	38	6	9	45	1.63
20585622--20585684	25	2.6	25	76	16	69	17	25	20	36	1.94
20592674--20592714	17	2.4	17	91	0	64	26	4	14	53	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20593367--20593430	26	2.5	26	80	10	78	10	23	23	42	1.86
20593832--20593862	11	2.8	11	100	0	62	38	6	16	38	1.74
20596123--20596210	15	5.6	16	74	18	78	28	2	0	69	1.01
20596123--20596224	33	3.4	31	76	20	101	27	2	0	69	1.03
20596162--20596219	25	2.3	25	90	0	89	27	1	0	70	0.97
20597342--20597371	15	1.9	16	93	6	53	46	6	0	46	1.29
20608076--20608167	48	1.9	47	82	6	114	45	15	27	11	1.81
20609438--20610064	44	14.2	44	88	1	907	28	21	24	25	1.99
20614585--20614676	47	1.9	48	82	4	114	23	16	19	40	1.91
20616311--20616350	20	2.0	20	85	9	55	45	12	15	27	1.82
20618546--20618589	19	2.4	19	85	11	56	29	2	0	68	1.02
20627560--20627598	20	2.0	20	94	0	69	38	28	0	33	1.57
20628587--20628630	21	2.1	21	91	0	70	22	36	27	13	1.92
20631027--20631055	14	2.0	15	93	6	51	65	13	0	20	1.26
20631552--20631581	14	2.1	14	93	0	51	0	13	3	83	0.77
20632199--20632250	3	17.3	3	85	0	59	32	3	5	57	1.40
20632199--20632239	18	2.3	18	95	0	73	34	4	2	58	1.32
20632300--20632354	20	2.5	24	77	22	66	30	5	5	58	1.44
20636533--20636566	14	2.4	14	90	0	50	29	11	29	29	1.92
20636631--20636682	16	3.4	14	82	17	59	82	7	9	0	0.84
20636631--20636682	15	3.3	15	86	5	68	82	7	9	0	0.84
20638494--20638697	88	2.3	87	88	3	284	29	20	23	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20638796--20639147	44	8.0	44	75	6	302	28	16	26	28	1.97
20638669--20639249	220	2.6	220	90	0	883	29	17	25	27	1.98
20639016--20639187	88	2.0	88	79	6	188	30	16	25	27	1.97
20639945--20639979	18	1.9	18	88	0	52	71	17	11	0	1.14
20640838--20640886	3	16.3	3	84	0	62	32	4	4	59	1.35
20640838--20640884	18	2.6	18	93	0	76	34	4	4	57	1.38
20648199--20648254	20	2.8	20	80	0	76	33	8	5	51	1.56
20662816--20662860	4	11.2	4	80	0	54	24	8	24	42	1.83
20662819--20662857	8	4.9	8	100	0	78	25	10	25	38	1.87
20665823--20665994	86	2.0	86	97	2	328	38	20	11	29	1.88
20671470--20671586	39	3.0	39	80	5	119	28	28	11	31	1.92
20672999--20673115	39	3.0	39	80	5	119	28	28	11	31	1.92
20680233--20680290	30	2.0	29	96	3	107	37	17	10	34	1.84
20684962--20685014	3	17.7	3	88	0	79	60	0	3	35	1.15
20687653--20688041	194	2.0	195	99	0	771	45	8	11	34	1.72
20692647--20692685	18	2.2	18	95	0	69	53	10	12	23	1.69
20699333--20699371	18	2.2	18	95	0	69	38	12	10	38	1.78
20716869--20717077	92	2.3	91	86	5	278	45	3	3	46	1.39
20717005--20717052	26	1.9	25	84	16	64	45	0	2	52	1.12
20717227--20717268	15	2.7	16	82	14	52	45	0	2	52	1.13
20717218--20717259	15	2.9	15	82	10	52	47	0	0	52	1.00
20717413--20717502	45	2.0	44	87	6	128	33	27	6	32	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20717482--20717546	16	4.1	16	91	0	103	23	35	6	35	1.80
20717480--20717541	32	1.9	32	96	0	115	22	35	6	35	1.80
20725426--20725451	6	4.3	6	100	0	52	30	0	15	53	1.42
20740001--20740028	3	9.3	3	100	0	56	67	0	32	0	0.91
20742362--20742533	27	6.4	27	84	4	188	43	16	20	18	1.88
20742362--20742531	81	2.1	81	84	2	216	44	16	21	18	1.87
20742897--20742957	28	2.2	28	87	0	86	21	22	26	29	1.99
20745092--20745489	199	2.0	199	100	0	796	27	16	23	32	1.96
20745592--20745840	27	9.3	27	83	6	276	44	16	20	18	1.87
20745592--20745840	81	3.1	80	85	6	324	44	16	20	18	1.87
20745592--20745823	107	2.2	108	85	5	301	44	16	19	18	1.86
20746188--20746252	28	2.3	28	86	5	87	23	27	24	24	2.00
20746196--20746266	28	2.5	28	86	0	97	23	28	19	28	1.99
20747810--20747855	20	2.4	19	82	13	58	56	0	2	41	1.11
20747878--20747920	22	1.9	23	90	4	70	37	0	2	60	1.10
20757671--20757714	22	1.9	24	81	9	56	36	4	13	45	1.64
20758226--20758271	23	2.0	23	82	0	56	21	28	32	17	1.96
20759663--20759701	17	2.4	17	91	4	62	71	0	0	28	0.86
20761071--20761122	25	2.0	26	82	10	63	19	1	5	73	1.14
20765150--20765202	25	2.1	25	92	0	88	28	1	16	52	1.54
20766324--20766466	44	3.2	44	97	0	268	25	29	9	35	1.88
20770453--20770479	6	4.5	6	100	0	54	85	0	0	14	0.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20770435--20770481	22	2.2	21	81	11	51	78	2	0	19	0.85
20776011--20776057	24	2.0	24	86	0	67	48	12	4	34	1.61
20780421--20780476	24	2.4	24	87	3	78	46	12	3	37	1.59
20780421--20780483	24	2.7	23	82	2	72	47	11	3	38	1.55
20780816--20780847	7	4.6	7	100	0	64	46	28	12	12	1.78
20781132--20781367	88	2.7	88	100	0	472	44	3	5	46	1.42
20784874--20784912	4	10.0	4	86	5	53	28	0	2	69	1.02
20785215--20785253	13	3.2	12	86	13	53	15	2	7	74	1.15
20785261--20785302	15	2.8	15	85	7	59	26	0	11	61	1.30
20797493--20798046	89	6.4	88	69	16	314	28	19	23	27	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145