genome.fa.s2.2.7.7.80.10.50.1000.139.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  139  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46157017--46157238	56	3.6	62	79	14	221	46	11	8	32	1.71
46157233--46158572	659	2.0	668	89	3	2036	28	23	19	28	1.98
46160891--46160957	33	2.0	33	100	0	134	56	8	2	31	1.45
46160953--46160988	4	8.5	4	88	11	54	0	25	0	75	0.81
46167218--46167267	10	4.7	11	75	9	50	66	6	6	22	1.36
46167223--46167263	21	2.0	21	95	0	73	63	7	7	21	1.45
46167218--46167282	34	2.0	32	87	6	94	64	6	6	23	1.39
46168862--46168907	22	2.1	21	84	4	56	41	2	2	54	1.25
46168987--46169026	21	1.9	21	94	0	71	42	10	5	42	1.60
46173276--46173300	5	5.0	5	100	0	50	20	0	0	80	0.72
46179403--46179440	3	12.7	3	100	0	76	68	0	0	31	0.90
46179630--46179819	3	63.7	3	70	11	104	58	3	5	32	1.37
46179818--46179846	3	9.7	3	100	0	58	34	0	31	34	1.58
46180456--46180494	6	6.5	6	84	0	51	82	0	17	0	0.68
46186218--46186392	56	3.0	56	67	18	158	42	7	6	43	1.59
46186156--46186392	118	2.0	119	99	0	467	44	8	5	41	1.59
46188010--46188424	100	4.2	100	89	1	566	30	23	20	25	1.98
46188041--46188425	50	7.7	50	69	2	254	31	23	19	25	1.98
46189557--46189683	52	2.5	52	89	3	186	29	30	14	25	1.95
46192832--46192890	27	2.2	26	81	3	73	79	13	5	1	0.97
46193323--46193368	20	2.3	20	81	7	58	78	4	17	0	0.91
46193340--46193366	12	2.2	12	100	0	54	77	0	22	0	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46193338--46193382	12	3.4	14	77	22	53	80	0	17	2	0.82
46193718--46193913	108	1.8	108	87	4	297	25	16	10	48	1.77
46194210--46194249	20	2.0	20	95	0	71	35	22	5	37	1.76
46194419--46194636	44	5.0	44	76	7	192	27	14	27	31	1.95
46194416--46194608	88	2.2	88	84	6	241	27	15	25	31	1.95
46194416--46194630	88	2.4	89	82	6	215	27	14	26	31	1.95
46194782--46195244	50	9.3	50	67	3	259	29	22	21	26	1.99
46194712--46195281	100	5.7	100	84	3	691	31	22	21	25	1.98
46194713--46195269	50	11.2	50	67	5	232	31	22	20	25	1.98
46195205--46195350	74	2.0	74	90	0	229	34	21	19	23	1.97
46195279--46195554	99	2.8	98	88	3	376	30	22	23	23	1.99
46195533--46195572	20	2.0	20	100	0	80	35	25	30	10	1.88
46195338--46195770	219	2.0	218	90	1	688	31	22	22	23	1.98
46195554--46195986	100	4.3	100	86	2	523	32	22	19	26	1.97
46195554--46195995	50	8.9	50	68	4	239	31	21	20	26	1.98
46196990--46197226	118	2.0	119	98	0	458	26	10	21	41	1.85
46209029--46209090	28	2.2	28	80	11	74	80	14	4	0	0.87
46209539--46209581	12	3.4	12	87	12	52	81	0	16	2	0.79
46209538--46209582	13	3.4	14	77	22	53	80	0	17	2	0.82
46210597--46210789	88	2.2	87	85	4	246	26	15	25	31	1.96
46210597--46210815	44	5.0	44	76	5	185	27	15	26	30	1.96
46210597--46210812	88	2.5	88	83	4	222	26	15	26	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46210941--46211112	86	2.0	86	93	0	290	28	21	23	26	1.99
46211043--46211513	50	9.4	50	68	2	237	29	21	22	26	1.99
46211027--46211548	100	5.2	100	87	2	681	30	21	22	26	1.98
46211472--46211622	74	2.0	74	92	0	248	33	21	22	23	1.98
46211546--46212037	99	4.9	101	85	3	622	30	22	22	25	1.99
46211177--46211904	372	2.0	373	85	4	997	30	21	22	25	1.99
46211552--46212034	50	9.7	50	68	6	264	30	22	21	25	1.99
46211546--46212036	199	2.5	199	87	2	700	30	22	22	25	1.99
46222540--46222664	51	2.4	52	91	1	198	29	29	14	26	1.95
46223893--46224060	52	3.3	51	86	4	216	26	13	30	28	1.94
46230349--46230427	40	2.0	41	87	2	115	49	20	7	22	1.74
46240186--46240214	6	4.8	6	100	0	58	51	31	0	17	1.45
46244940--46244970	14	2.2	14	94	0	53	29	0	3	67	1.06
46245050--46245080	14	2.2	14	94	0	53	67	3	0	29	1.06
46246961--46246986	3	8.7	3	100	0	52	69	0	0	30	0.89
46247216--46247250	19	1.9	19	88	11	56	60	0	2	37	1.12
46247651--46247700	24	2.0	26	88	7	77	36	6	4	54	1.44
46279161--46279238	37	2.1	36	81	9	86	44	2	0	52	1.14
46279517--46279577	31	2.0	31	87	6	88	21	18	11	49	1.78
46288436--46289189	384	2.0	383	86	5	1078	37	17	15	29	1.91
46291646--46291717	36	2.0	36	94	0	126	45	23	12	18	1.83
46291945--46292069	62	2.0	63	87	1	180	32	8	16	43	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46292757--46292789	17	1.9	17	93	0	57	15	18	12	54	1.71
46293671--46293711	18	2.2	18	86	4	55	31	2	2	63	1.20
46295759--46295801	21	2.0	21	100	0	86	41	18	18	20	1.90
46297024--46297064	19	2.2	19	100	0	82	36	4	14	43	1.67
46307426--46307452	14	1.9	14	100	0	54	44	0	0	55	0.99
46308562--46308591	7	4.1	7	91	8	51	16	0	0	83	0.65
46318234--46318467	109	2.2	109	86	5	325	33	11	13	41	1.80
46325378--46325411	3	11.7	3	93	6	61	67	0	0	32	0.91
46325379--46325407	14	2.1	14	100	0	58	65	0	0	34	0.93
46325378--46325410	17	1.9	17	100	0	66	66	0	0	33	0.92
46330090--46330164	32	2.5	30	77	14	82	42	1	14	41	1.54
46331007--46331044	19	2.0	19	94	0	67	55	5	0	39	1.23
46331140--46331209	30	2.3	30	92	0	113	55	5	11	27	1.57
46332283--46332380	39	2.4	42	79	5	103	19	28	22	29	1.98
46332681--46332727	22	2.1	22	100	0	94	40	23	8	27	1.83
46334508--46334670	36	4.6	36	71	7	118	20	17	23	38	1.93
46335279--46335568	153	1.9	153	91	0	472	25	29	14	30	1.95
46335430--46335698	132	2.1	129	90	2	412	25	31	13	29	1.94
46346151--46346278	64	2.0	64	96	0	238	44	14	25	14	1.84
46348296--46348330	18	1.9	18	88	11	54	37	11	2	48	1.54
46350288--46350338	21	2.4	21	83	3	66	68	5	13	11	1.37
46356157--46356686	265	2.0	265	100	0	1060	32	18	9	39	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46366290--46366319	15	1.9	16	93	6	53	0	0	10	90	0.47
46369415--46369452	20	1.9	20	88	0	58	44	7	5	42	1.56
46373141--46373188	23	2.1	23	96	0	87	39	22	12	25	1.89
46378919--46378952	17	1.9	18	88	5	52	23	2	8	64	1.36
46386087--46386117	4	7.8	4	100	0	62	25	0	22	51	1.48
46389195--46389219	11	2.3	11	100	0	50	36	16	8	40	1.77
46397078--46397130	23	2.4	22	81	9	63	35	0	0	64	0.94
46397094--46397122	8	3.8	8	90	9	51	34	0	0	65	0.93
46397085--46397128	15	2.9	15	86	3	61	34	0	0	65	0.93
46399841--46399985	77	1.9	75	80	5	166	38	10	11	40	1.75
46403689--46403739	13	3.9	13	84	0	66	31	7	23	37	1.83
46404797--46404829	16	2.0	17	88	5	50	42	12	3	42	1.57
46405458--46405484	2	13.5	2	100	0	54	51	0	0	48	1.00
46406027--46406073	15	3.2	15	77	14	53	14	6	10	68	1.38
46409727--46409764	17	2.2	18	85	4	51	68	2	0	28	1.03
46409918--46409960	18	2.4	17	85	14	52	34	0	2	62	1.08
46409920--46409963	19	2.4	18	76	3	52	34	0	2	63	1.07
46410979--46411183	108	1.9	106	90	4	322	35	20	16	27	1.94
46413313--46413551	40	5.8	40	77	11	266	22	20	23	33	1.97
46413286--46413548	84	3.1	84	91	1	440	22	19	24	33	1.97
46413581--46415111	87	17.6	87	97	0	2702	23	23	23	28	1.99
46423039--46423082	10	4.2	10	77	11	52	34	0	2	63	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46433608--46435077	366	4.0	366	90	2	2288	30	25	16	26	1.97
46435065--46435454	127	3.1	127	98	0	739	38	20	10	30	1.85
46435629--46436005	127	3.0	127	95	1	688	38	20	10	30	1.86
46437212--46437248	13	2.6	15	83	8	51	35	0	5	59	1.20
46437377--46437426	22	2.4	20	80	6	55	42	2	18	38	1.61
46447279--46447317	13	3.0	13	85	11	53	74	0	23	2	0.94
46448005--46448045	14	2.7	15	82	17	50	43	0	19	36	1.51
46448315--46448348	17	2.1	16	89	10	52	44	0	20	35	1.52
46451687--46451844	43	3.7	42	81	10	178	31	28	17	23	1.97
46451687--46451844	85	1.8	84	81	11	196	31	28	17	23	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145