genome.fa.s11.2.7.7.80.10.50.1000.100.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  100  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30566568--30568077	755	2.0	755	99	0	3002	34	11	16	37	1.85
30568741--30568840	48	2.1	47	90	5	157	45	8	16	31	1.76
30570334--30570361	14	2.0	14	100	0	56	35	21	14	28	1.92
30580165--30580264	48	2.1	47	90	5	157	44	8	16	32	1.76
30581758--30581784	14	1.9	14	100	0	54	33	22	14	29	1.94
30585266--30585542	132	2.1	132	90	2	439	24	24	21	29	1.99
30585312--30585520	44	4.8	44	68	7	136	24	25	19	31	1.98
30603273--30603369	28	3.5	28	92	0	149	27	24	17	29	1.97
30608451--30608785	167	2.0	166	98	0	652	37	15	20	25	1.93
30612957--30613021	20	3.2	20	64	23	55	46	16	18	18	1.85
30615787--30615822	15	2.4	15	100	0	72	36	25	0	38	1.56
30617069--30617263	51	3.9	49	75	9	171	30	27	15	26	1.96
30619890--30619939	16	3.4	16	68	21	54	22	24	6	48	1.73
30619892--30619947	28	2.0	28	100	0	112	21	25	7	46	1.76
30619995--30620076	42	2.0	42	87	4	121	31	24	13	30	1.93
30637265--30637302	18	2.2	18	85	4	51	31	18	0	50	1.47
30638823--30638954	50	2.6	50	78	3	131	20	28	23	27	1.99
30643197--30643425	50	4.5	50	82	5	246	28	22	27	20	1.99
30643252--30643446	100	2.0	100	83	0	246	29	22	27	20	1.99
30643695--30643733	12	3.2	12	85	0	51	51	5	23	20	1.67
30647037--30647131	37	2.6	37	86	0	136	23	18	15	42	1.89
30647469--30647585	49	2.5	48	79	6	141	47	11	8	31	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30648617--30648647	7	4.4	7	100	0	62	29	58	0	12	1.35
30649977--30650080	33	3.2	33	90	5	160	37	0	6	55	1.26
30650008--30650060	3	17.7	3	76	7	54	37	0	3	58	1.16
30652505--30653096	296	2.0	296	99	0	1175	24	22	15	37	1.93
30653774--30653818	19	2.4	19	96	3	83	28	15	8	46	1.76
30661731--30661762	16	2.0	16	93	0	55	25	15	0	59	1.36
30661886--30661984	46	2.2	43	81	12	110	33	25	18	23	1.97
30661990--30662176	51	3.7	51	77	12	206	29	26	16	26	1.97
30661988--30662172	101	1.8	102	87	5	277	30	26	16	26	1.97
30661983--30662206	101	2.2	102	80	11	255	29	27	15	27	1.96
30666093--30666172	27	3.0	27	86	0	115	30	15	26	28	1.96
30677588--30677669	33	2.5	33	82	7	89	26	21	15	35	1.94
30679991--30680085	46	2.1	46	92	4	156	23	20	21	35	1.96
30694261--30694322	26	2.4	26	83	0	79	24	27	19	29	1.98
30696980--30697481	251	2.0	251	97	0	950	33	20	8	37	1.83
30697612--30697669	20	2.9	20	84	0	62	31	13	37	17	1.89
30703562--30703605	22	2.0	22	95	0	79	34	4	36	25	1.76
30718345--30718522	27	6.6	27	83	3	205	26	15	28	29	1.96
30718346--30718501	82	1.9	81	88	3	233	26	15	28	29	1.96
30718342--30718522	82	2.2	81	83	2	229	27	15	27	29	1.96
30720068--30720448	95	4.0	95	98	0	717	35	19	26	18	1.95
30723089--30723173	20	4.2	20	87	3	109	28	32	16	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30736054--30736143	18	4.8	18	68	21	51	65	1	20	13	1.32
30736058--30736136	12	6.7	12	69	26	53	64	1	20	13	1.35
30736044--30736143	45	2.2	44	81	8	121	67	1	19	13	1.29
30740723--30740815	45	2.0	46	85	6	127	35	20	18	25	1.95
30742348--30742415	28	2.5	28	80	4	77	48	16	11	23	1.79
30742563--30742617	20	2.8	20	82	0	74	38	14	21	25	1.92
30745472--30745696	40	5.6	39	85	6	247	25	27	22	24	2.00
30745472--30745698	80	2.8	79	84	5	278	25	26	22	25	2.00
30745472--30745695	120	1.9	120	84	5	301	25	27	21	25	2.00
30747442--30747482	21	2.0	21	95	0	73	17	12	4	65	1.42
30754194--30754420	40	5.7	40	86	4	271	25	26	22	25	2.00
30757713--30758789	537	2.0	537	94	0	1902	25	23	16	35	1.95
30760963--30761055	45	2.0	46	85	6	127	35	20	18	25	1.95
30762803--30762857	20	2.8	20	82	0	74	38	14	21	25	1.92
30762972--30763018	19	2.4	19	86	10	60	34	12	10	42	1.78
30770040--30770082	20	2.2	20	91	0	68	34	20	23	20	1.96
30770047--30770094	20	2.4	20	82	6	62	35	16	25	22	1.95
30771711--30771770	28	2.2	27	81	3	66	50	13	6	30	1.67
30774918--30774974	15	3.8	14	77	13	60	3	19	1	75	1.04
30774930--30774971	22	1.9	22	85	9	59	4	11	2	80	0.95
30778748--30778835	46	1.9	46	95	0	158	23	19	20	36	1.95
30789041--30789102	27	2.3	27	81	13	74	29	14	11	45	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30791336--30791380	18	2.5	17	86	10	63	64	0	13	22	1.28
30792279--30792375	24	3.9	25	72	12	83	75	3	15	6	1.13
30792279--30792375	25	3.9	24	71	15	72	75	3	15	6	1.13
30792308--30792343	18	2.0	18	88	0	54	80	2	11	5	0.98
30796970--30797147	27	6.6	27	77	6	137	30	28	15	25	1.96
30796970--30797147	54	3.3	54	78	7	164	30	28	15	25	1.96
30804068--30804124	26	2.2	26	81	6	62	12	26	0	61	1.31
30804114--30804174	24	2.6	23	75	12	61	8	19	4	67	1.36
30807421--30807455	18	1.9	18	88	11	54	22	20	0	57	1.41
30807525--30807554	15	1.9	16	93	6	53	3	16	0	80	0.85
30807443--30807541	6	16.0	6	72	10	74	6	19	4	70	1.24
30808415--30808439	11	2.3	11	100	0	50	20	12	8	60	1.57
30813678--30813737	30	2.0	30	93	6	104	16	20	13	50	1.78
30818055--30818210	40	3.9	41	85	3	174	27	28	21	23	1.99
30835100--30835137	16	2.4	16	95	0	67	2	10	28	57	1.45
30841609--30841639	14	2.2	14	94	0	53	77	0	19	3	0.90
30844375--30844404	15	1.9	16	93	6	53	80	0	16	3	0.85
30845256--30845319	32	2.0	32	90	0	101	15	20	18	45	1.86
30846063--30846114	18	2.9	18	91	0	77	73	1	19	5	1.14
30846061--30846114	6	9.0	6	81	0	63	74	1	18	5	1.11
30846099--30846157	24	2.5	24	80	0	64	64	3	22	10	1.39
30847980--30848055	34	2.2	34	92	0	125	35	9	11	43	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30850666--30850995	40	8.3	40	94	1	502	24	20	27	26	1.99
30850613--30850995	80	4.8	80	89	2	504	25	20	27	26	1.99
30850613--30850995	120	3.2	120	87	2	504	25	20	27	26	1.99
30858681--30858943	40	6.6	40	88	3	325	24	20	27	26	1.99
30858720--30858978	80	3.3	80	85	3	256	25	20	27	25	1.99
30860725--30860809	42	2.0	42	97	0	161	21	24	24	29	1.99
30862622--30862664	18	2.4	18	96	0	77	18	37	16	27	1.92
30881945--30881975	10	3.2	10	90	9	55	83	6	0	9	0.79
30885009--30885053	20	2.2	20	84	7	56	24	24	24	26	2.00
30890414--30890490	40	1.9	40	97	0	145	57	1	29	11	1.43
30893199--30893293	12	7.8	12	68	26	58	12	18	2	66	1.34
30893201--30893277	27	2.6	29	82	10	86	14	18	2	64	1.39
30893192--30893280	18	4.7	18	68	16	56	13	17	2	66	1.35
30893198--30893293	27	3.4	26	74	20	79	12	18	2	66	1.33
30897517--30897563	24	1.9	25	83	12	62	51	14	14	19	1.77
30896380--30899060	732	3.7	732	97	0	4795	44	17	17	20	1.87
30899701--30899727	14	1.9	14	100	0	54	70	0	7	22	1.12
30907173--30907216	17	2.6	18	82	10	56	13	9	2	75	1.14
30907737--30907789	27	2.0	25	85	7	70	58	9	11	20	1.60
30910336--30910572	51	4.7	51	75	6	205	30	25	17	26	1.97
30910327--30910568	101	2.4	101	81	5	258	30	24	17	26	1.97
30913070--30913123	22	2.4	22	75	9	56	44	33	3	18	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30913466--30913505	15	2.8	14	81	7	53	57	2	7	32	1.40
30916654--30916808	72	2.1	73	87	1	222	30	25	17	25	1.97
30925907--30926125	50	4.4	50	93	1	354	31	8	31	28	1.86
30926261--30926336	37	2.1	37	89	0	116	22	18	32	26	1.97
30930184--30930221	18	2.1	18	85	9	51	7	21	0	71	1.11
30933494--30933550	28	2.0	28	86	6	80	47	15	10	26	1.78
30939280--30939307	9	3.1	9	100	0	56	21	0	0	78	0.75
30939397--30939514	50	2.3	52	89	2	177	32	16	13	37	1.88
30939383--30939514	50	2.6	51	84	3	176	33	15	12	37	1.86
30941598--30941628	12	2.6	12	94	0	53	70	6	0	22	1.09

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144