genome.fa.s11.2.7.7.80.10.50.1000.138.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  138  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42673459--42673503	19	2.3	19	84	7	54	51	6	13	28	1.66
42703469--42703757	40	7.2	40	81	0	299	17	24	19	38	1.93
42710498--42710746	40	6.2	40	84	0	309	20	28	15	35	1.93
42710611--42710719	20	5.4	20	65	12	62	21	33	13	32	1.92
42710634--42710738	20	5.2	20	65	4	68	18	34	13	34	1.89
42717207--42717300	10	9.5	10	73	19	63	56	3	1	39	1.22
42717211--42717293	39	2.1	40	84	4	105	57	2	1	38	1.19
42719126--42719211	31	2.8	31	85	0	118	20	11	12	54	1.69
42719137--42719224	31	2.9	30	83	5	97	21	10	13	54	1.68
42727780--42727810	10	3.1	10	90	0	53	74	0	0	25	0.82
42727774--42727808	10	3.5	10	88	0	52	74	0	0	25	0.82
42727774--42727812	11	3.7	11	83	13	55	71	0	0	28	0.86
42729811--42729937	39	3.2	40	79	10	118	19	26	26	26	1.99
42734047--42734089	21	2.0	21	95	0	77	39	18	25	16	1.91
42736204--42736277	7	10.6	7	79	0	67	43	8	27	21	1.80
42736204--42736277	14	5.3	14	80	0	76	43	8	27	21	1.80
42736215--42736275	21	2.9	21	95	0	104	45	9	29	14	1.77
42742026--42742098	19	3.8	19	88	0	119	38	13	9	38	1.78
42763851--42763955	50	2.1	51	89	7	160	58	4	6	30	1.45
42763907--42763931	13	1.9	13	100	0	50	64	4	0	32	1.12
42765852--42765896	21	2.1	21	83	0	54	40	2	2	55	1.24
42784526--42784566	20	2.0	20	100	0	82	46	14	4	34	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42785826--42785873	15	3.2	15	71	11	53	43	8	22	25	1.81
42790460--42790537	15	5.2	15	70	11	70	43	7	23	25	1.80
42790453--42790537	30	2.8	30	96	0	152	44	7	23	24	1.78
42795204--42795246	15	2.8	14	78	21	50	30	2	0	67	1.03
42796145--42796199	27	2.0	27	96	0	101	20	25	20	34	1.96
42799033--42799080	22	2.2	22	81	7	53	58	27	6	8	1.51
42806154--42806208	25	2.2	25	96	0	101	38	14	25	21	1.92
42806154--42806215	25	2.5	25	91	0	88	45	12	22	19	1.84
42807494--42807550	27	2.1	27	100	0	114	40	22	10	26	1.86
42808737--42808818	43	1.9	43	82	9	105	23	19	35	21	1.96
42815913--42815985	32	2.2	33	80	9	87	54	24	0	20	1.44
42816623--42816679	15	3.8	15	92	0	96	63	12	12	12	1.53
42818765--42818794	10	2.9	10	95	5	51	40	6	0	53	1.27
42820860--42820933	22	3.0	25	77	18	68	52	1	1	44	1.17
42820880--42820933	28	1.9	28	85	14	76	51	1	1	44	1.22
42829223--42829285	32	2.0	32	96	0	117	57	7	0	34	1.28
42831683--42831882	109	1.9	106	92	3	337	40	15	7	37	1.74
42834840--42834874	5	7.0	5	100	0	70	80	0	20	0	0.72
42835542--42835591	20	2.5	20	93	3	84	32	0	12	56	1.36
42845096--42845136	3	13.7	3	100	0	82	65	0	34	0	0.93
42846133--42846191	31	1.9	31	92	0	100	42	10	5	42	1.60
42846540--42846575	18	1.9	19	88	5	56	5	47	30	16	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42847734--42847799	7	8.1	8	75	23	50	34	6	0	59	1.22
42847738--42847783	17	2.7	17	83	10	58	34	6	0	58	1.24
42847703--42847778	16	4.5	16	73	16	64	30	3	1	64	1.20
42847704--42847799	24	3.8	23	71	20	68	32	5	1	61	1.25
42851223--42851304	19	4.2	19	76	13	58	42	0	1	56	1.07
42851215--42851307	40	2.3	40	83	3	116	41	0	1	56	1.06
42851214--42851297	21	4.0	21	77	13	68	41	0	1	57	1.06
42851243--42851311	31	2.3	30	92	7	113	44	0	0	55	0.99
42851215--42851307	9	9.4	9	72	16	69	41	0	1	56	1.06
42855379--42855719	109	3.1	109	91	1	542	32	18	17	31	1.94
42855928--42855977	7	7.3	7	84	8	50	80	0	6	14	0.90
42855928--42855969	13	3.2	13	80	12	50	78	0	7	14	0.95
42856230--42856310	29	2.7	29	79	9	83	46	2	7	43	1.45
42860711--42860788	29	2.7	29	80	4	86	38	19	12	29	1.89
42861046--42861083	15	2.5	15	86	4	58	26	36	13	23	1.91
42865439--42865474	10	3.4	10	85	14	54	58	36	0	5	1.22
42866550--42866608	3	19.7	3	100	0	118	33	0	0	66	0.92
42866680--42866742	14	4.3	15	77	18	62	36	3	1	58	1.23
42866697--42866752	18	3.2	17	80	5	60	37	3	1	57	1.27
42867053--42867433	109	3.5	109	93	1	620	30	16	19	33	1.94
42871420--42871461	20	2.1	20	86	0	57	47	0	7	45	1.30
42876526--42876567	20	2.1	20	86	0	57	47	0	4	47	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42883312--42883373	31	2.1	30	87	6	90	40	0	8	51	1.31
42884039--42884092	22	2.5	21	80	14	56	5	12	11	70	1.32
42888857--42888898	17	2.5	17	92	0	66	4	21	23	50	1.68
42902265--42902319	28	2.0	28	96	0	101	45	1	16	36	1.58
42906279--42906369	23	4.0	23	89	0	137	24	26	4	45	1.72
42909513--42909604	23	4.0	23	86	0	121	22	28	4	44	1.72
42913910--42913951	20	2.1	20	100	0	84	28	9	0	61	1.27
42924908--42925115	40	5.2	40	80	0	202	36	15	26	21	1.94
42924942--42924998	20	2.8	20	69	10	53	36	12	28	22	1.90
42924945--42925115	80	2.2	79	84	1	225	36	13	28	21	1.91
42932062--42932266	40	5.1	39	78	4	169	38	17	27	17	1.92
42932074--42932266	80	2.4	78	77	8	190	37	17	27	17	1.92
42932112--42932173	20	3.1	20	69	17	56	38	19	29	12	1.89
42934274--42934317	18	2.4	18	81	11	54	47	0	0	52	1.00
42936748--42936818	34	2.1	35	84	5	92	29	21	26	22	1.99
42940382--42940410	15	2.0	15	93	6	51	62	0	3	34	1.12
42946261--42946303	19	2.3	18	84	8	50	30	2	0	67	1.03
42948617--42948654	3	12.7	3	100	0	76	34	0	0	65	0.93
42949824--42949891	24	2.8	23	77	16	66	58	4	2	33	1.33
42955152--42955191	19	2.1	19	95	0	71	42	25	2	30	1.68
42976748--42976822	6	12.7	6	82	13	77	17	2	0	80	0.84
42976748--42976812	7	9.4	7	81	8	55	16	3	0	80	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42976756--42976822	10	6.8	10	73	20	61	17	2	0	79	0.86
42976931--42976972	20	2.1	20	90	0	66	30	40	7	21	1.80
42977749--42977978	118	1.9	118	90	0	361	23	17	29	29	1.97
42981981--42982193	45	4.8	44	75	5	151	42	14	20	22	1.88
42983135--42983178	17	2.6	17	85	0	61	29	20	22	27	1.99
42990964--42991292	130	2.6	126	84	4	385	34	19	17	28	1.95
42991699--42991747	20	2.2	20	86	13	62	65	4	4	26	1.29
42993786--42993854	35	2.0	33	88	5	102	60	14	4	20	1.50
42998297--42998402	43	2.5	43	79	13	121	21	18	21	37	1.94
42997688--42998493	85	9.5	85	83	3	1005	21	26	21	30	1.99
43006268--43006312	21	2.1	21	91	0	72	15	24	22	37	1.93
43011162--43011232	35	2.0	35	94	0	124	59	15	4	21	1.53
43012197--43012336	3	46.7	3	70	16	94	62	1	7	29	1.30
43012225--43012330	43	2.5	41	79	10	115	61	1	6	30	1.32
43012293--43012342	24	2.1	24	85	7	66	68	0	4	28	1.08
43023366--43023412	21	2.1	21	84	11	58	14	29	0	55	1.40
43023828--43023852	8	3.1	8	100	0	50	76	0	0	24	0.80
43023831--43023904	29	2.5	30	80	10	73	63	4	0	32	1.13
43023849--43023894	16	3.1	15	78	12	51	58	4	0	36	1.18
43025216--43025244	14	2.0	15	93	6	51	13	10	0	75	1.04
43052423--43052932	89	5.5	92	75	11	335	32	17	20	28	1.96
43052423--43052963	44	11.6	44	72	14	281	32	17	21	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43052475--43052872	145	2.8	140	78	9	439	32	18	20	29	1.96
43052757--43052963	89	2.3	88	85	2	272	31	19	21	27	1.97
43056631--43056658	9	3.1	9	100	0	56	78	10	10	0	0.96
43060324--43060389	31	2.2	30	84	10	82	39	1	3	56	1.24
43061809--43061991	84	2.2	84	83	5	219	32	20	12	34	1.90
43062843--43062888	18	2.5	19	82	6	60	41	30	2	26	1.68
43062807--43062854	7	6.7	7	80	4	60	43	35	0	20	1.52
43062880--43062913	13	2.6	13	90	0	50	47	26	2	23	1.66
43062934--43062968	14	2.5	14	90	0	61	22	48	5	22	1.72
43063376--43063497	40	3.0	40	80	8	158	28	22	19	29	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144