genome.fa.s11.2.7.7.80.10.50.1000.104.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  104  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31919944--31920009	24	2.7	23	77	9	69	27	0	18	54	1.44
31920301--31920345	12	3.4	12	80	19	54	48	13	0	37	1.42
31920309--31920372	15	4.1	15	69	25	51	40	15	1	42	1.57
31920357--31920520	79	2.1	79	98	0	319	37	13	8	40	1.75
31920539--31920641	49	2.2	46	86	8	136	35	14	12	36	1.84
31922480--31922624	28	5.1	28	70	16	109	35	15	23	25	1.95
31922458--31922649	57	3.4	56	84	2	240	33	15	25	26	1.95
31922516--31922670	28	5.5	28	71	16	115	32	15	25	27	1.95
31925084--31925139	27	2.1	27	83	3	69	67	10	8	12	1.41
31932672--31932901	9	25.6	9	73	11	152	32	1	19	46	1.58
31932672--31932781	34	3.5	33	72	21	117	31	0	18	49	1.54
31932674--31932853	61	2.9	61	91	5	272	33	0	19	46	1.54
31932772--31932928	47	3.3	47	90	2	244	34	1	18	45	1.58
31932956--31933027	9	8.0	9	77	9	58	33	0	16	50	1.46
31933087--31933495	119	3.4	121	91	3	689	45	2	7	44	1.45
31933419--31933465	21	2.3	21	88	3	69	48	0	8	42	1.33
31934739--31934774	16	2.2	16	95	0	63	33	13	50	2	1.57
31944802--31944840	17	2.4	17	86	4	53	30	25	12	30	1.93
31949310--31949494	101	1.8	102	83	3	248	24	14	27	32	1.94
31953597--31953632	13	2.8	13	91	0	54	41	13	0	44	1.44
31953695--31953867	86	2.0	86	93	0	292	41	13	8	36	1.75
31954637--31954661	3	8.3	3	100	0	50	0	0	32	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31958634--31958840	107	1.9	107	90	1	326	29	20	14	35	1.92
31968482--31968596	57	2.0	57	87	0	167	16	20	23	39	1.92
31969571--31969601	14	2.2	14	94	0	53	3	58	9	29	1.46
31979380--31979505	63	2.0	63	84	0	162	17	18	28	35	1.93
31981167--31981428	130	2.0	130	99	0	515	45	9	16	29	1.79
31982286--31982573	50	5.6	51	82	6	243	28	22	28	20	1.99
31982286--31982575	100	2.8	100	81	6	309	28	22	28	20	1.99
31984886--31985032	72	2.0	72	97	0	276	34	16	16	33	1.91
31986621--31986734	57	2.0	57	98	0	219	29	7	25	37	1.82
31988040--31988111	31	2.6	26	70	19	65	51	20	15	12	1.75
31994144--31994182	12	3.2	12	85	0	51	20	23	5	51	1.67
31994452--31994626	50	3.5	50	83	3	217	21	29	21	28	1.99
31994452--31994670	50	4.3	50	82	3	186	22	28	20	28	1.98
32003327--32003376	22	2.2	22	86	10	66	50	22	2	26	1.60
32003350--32003387	14	2.6	15	83	8	60	52	21	0	26	1.47
32005960--32006119	32	5.0	32	79	0	176	36	18	20	24	1.94
32005962--32006119	64	2.5	64	84	4	203	36	17	20	24	1.94
32006290--32006396	24	4.5	24	85	0	106	47	22	6	23	1.74
32006305--32006401	24	4.0	24	84	5	108	46	23	6	23	1.75
32006391--32006467	26	2.9	26	80	1	73	31	18	18	32	1.95
32006445--32006840	81	4.9	81	88	1	544	22	18	21	37	1.94
32006445--32006841	27	14.7	27	81	2	422	22	18	21	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32009568--32009613	21	2.1	23	84	8	60	32	4	19	43	1.71
32012214--32012250	8	4.6	8	93	0	56	32	37	5	24	1.78
32013800--32013828	12	2.4	12	100	0	58	41	20	0	37	1.53
32014868--32014928	25	2.4	25	86	0	77	34	19	8	37	1.82
32023767--32023876	54	2.0	54	92	0	184	28	3	21	46	1.68
32025773--32025814	21	2.0	20	82	13	50	28	7	16	47	1.73
32031069--32031098	15	2.0	15	100	0	60	26	13	20	40	1.89
32039715--32039809	47	2.0	47	89	0	145	33	21	14	30	1.93
32047377--32047446	25	2.8	25	86	0	95	25	24	18	31	1.98
32057648--32057690	23	1.9	22	85	4	59	41	4	4	48	1.44
32058242--32058539	75	4.0	75	100	0	596	35	17	12	34	1.87
32061117--32061301	40	4.7	40	82	6	216	25	27	22	24	2.00
32061117--32061301	79	2.3	82	82	7	220	25	27	22	24	2.00
32082264--32082301	18	2.1	18	90	0	58	47	0	13	39	1.42
32082603--32082668	28	2.4	28	89	0	105	48	0	9	42	1.35
32086602--32086920	33	9.8	33	78	5	258	22	21	13	41	1.88
32089856--32089889	16	2.2	16	89	5	52	35	8	11	44	1.72
32100579--32100656	29	2.7	28	80	11	95	25	14	30	29	1.94
32100609--32100937	175	1.9	174	97	0	622	30	14	24	31	1.94
32106925--32107085	81	2.0	81	95	0	286	34	18	23	23	1.96
32107955--32108110	78	2.0	78	96	0	285	23	10	32	33	1.88
32108880--32109064	40	4.7	40	80	10	186	24	22	27	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32108881--32109064	79	2.3	81	81	9	218	25	22	27	25	2.00
32108881--32109097	79	2.7	79	79	9	185	26	21	27	24	1.99
32113960--32114117	43	3.7	43	85	4	203	31	24	17	27	1.97
32116572--32116611	19	2.1	19	100	0	80	37	10	15	37	1.80
32116936--32117006	33	2.2	33	84	5	90	23	7	30	38	1.82
32119768--32119800	14	2.2	15	89	10	50	6	18	0	75	1.00
32120736--32120802	31	2.2	31	84	7	84	23	22	22	31	1.98
32124546--32124666	47	2.6	47	93	0	197	28	30	6	33	1.83
32134045--32134470	40	10.6	40	93	1	701	23	22	28	26	1.99
32150427--32150468	18	2.3	18	88	8	59	35	2	0	61	1.09
32151223--32151403	100	1.8	100	91	2	301	39	4	12	42	1.65
32151859--32151883	13	1.9	13	100	0	50	32	0	0	68	0.90
32154514--32154542	8	3.6	8	100	0	58	89	0	10	0	0.48
32160635--32160689	25	2.1	27	83	6	69	40	9	3	47	1.53
32178032--32178076	16	2.8	16	86	0	63	31	0	6	62	1.21
32179896--32179926	16	1.9	16	93	0	53	22	3	54	19	1.58
32182453--32182548	40	2.4	40	83	0	111	18	21	21	37	1.94
32182453--32182548	20	4.8	20	61	0	57	18	21	21	37	1.94
32182491--32182586	40	2.4	40	92	0	156	18	20	19	40	1.91
32187767--32187810	18	2.4	18	76	0	52	50	0	34	15	1.45
32189625--32189721	39	2.5	38	84	1	122	49	8	4	38	1.52
32194845--32194950	52	2.0	52	92	0	176	26	11	22	39	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32195204--32195253	17	3.0	17	83	11	68	72	0	12	16	1.13
32211708--32211757	15	3.2	15	83	8	55	44	10	16	30	1.80
32216264--32216380	28	4.2	28	79	5	130	31	22	23	22	1.98
32220767--32220816	25	2.0	25	88	0	73	16	12	8	64	1.49
32224015--32224098	20	4.2	20	78	0	78	11	33	19	35	1.88
32225119--32225163	21	2.2	20	84	11	56	24	8	2	64	1.34
32229795--32229865	32	2.2	33	82	2	81	26	23	25	23	2.00
32239517--32239559	22	2.0	22	100	0	86	25	18	18	37	1.94
32249018--32249061	20	2.2	20	87	0	61	6	36	22	34	1.81
32251388--32251438	25	2.0	26	84	3	68	43	11	7	37	1.71
32251546--32251600	16	3.4	16	73	9	58	43	5	1	49	1.36
32251577--32251647	21	3.1	23	69	18	58	53	2	0	43	1.15
32253911--32253948	19	2.0	19	100	0	76	31	0	26	42	1.56
32264846--32264884	19	2.1	19	85	0	51	33	2	7	56	1.41
32266539--32266862	27	12.0	27	77	4	251	43	20	14	21	1.87
32266537--32266832	81	3.7	80	82	4	317	44	20	14	20	1.86
32266574--32266861	81	3.6	80	80	7	314	43	21	14	20	1.88
32267073--32267143	26	2.7	26	78	6	81	18	23	23	33	1.96
32267324--32267421	28	3.5	28	85	2	135	25	22	24	27	2.00
32268601--32268631	16	1.9	16	93	0	53	74	9	6	9	1.23
32268950--32269040	28	3.3	28	84	3	114	28	10	27	32	1.91
32268950--32269052	28	3.7	28	83	3	93	25	12	29	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32272026--32272166	29	4.9	29	80	7	144	37	14	26	20	1.92
32271997--32272166	59	2.9	59	76	6	175	37	14	26	21	1.92
32275016--32275082	29	2.3	29	82	12	75	23	10	5	59	1.52
32276306--32276341	18	2.0	18	88	0	54	61	0	33	5	1.19
32282070--32282120	24	2.1	24	100	0	102	39	11	7	41	1.71
32285209--32285247	3	13.0	3	100	0	78	66	0	0	33	0.92
32292778--32292845	34	2.0	34	85	5	93	29	23	26	20	1.99
32296566--32296620	26	2.1	26	82	0	65	40	7	5	47	1.54
32297205--32297595	195	2.0	194	97	0	737	44	11	10	33	1.74
32302393--32302512	43	2.8	42	79	5	132	31	30	16	21	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144