genome.fa.s11.2.7.7.80.10.50.1000.68.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  68  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20670156--20670489	46	7.8	41	71	15	164	31	20	20	26	1.98
20669723--20670668	44	21.8	45	71	15	373	31	21	21	25	1.98
20669897--20670484	170	3.4	169	87	5	742	31	21	21	25	1.98
20670367--20670746	87	4.4	87	90	3	520	30	21	21	25	1.99
20670197--20670709	174	3.0	175	84	5	546	31	21	21	25	1.98
20669726--20670745	470	2.2	461	84	6	1208	31	21	21	25	1.98
20672508--20672553	12	3.6	12	78	16	56	34	0	0	65	0.93
20682316--20682559	71	3.5	70	81	3	255	37	14	18	28	1.91
20682377--20682693	65	4.7	65	77	7	242	35	15	18	29	1.92
20682446--20682696	134	1.9	133	83	4	326	35	15	19	30	1.92
20688127--20688277	52	2.9	52	89	0	230	19	22	13	44	1.85
20689021--20689050	3	10.0	3	100	0	60	66	0	0	33	0.92
20689269--20689310	19	2.3	19	84	12	52	71	2	0	26	0.98
20689261--20689311	19	2.7	18	77	14	50	68	1	0	29	1.00
20690721--20690822	50	2.0	50	94	0	177	28	16	15	39	1.90
20696474--20696531	25	2.3	25	76	5	64	31	1	0	67	1.01
20697406--20697464	29	2.0	29	83	6	73	49	8	16	25	1.74
20709403--20709497	51	1.9	50	87	8	133	36	6	1	55	1.32
20709400--20709482	12	6.6	12	73	12	51	36	4	1	57	1.28
20709427--20709487	2	32.0	2	79	9	56	40	4	0	54	1.22
20709422--20709470	20	2.6	18	90	6	71	38	4	0	57	1.18
20709455--20709493	20	1.9	21	84	5	53	35	7	0	56	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20721318--20721613	47	6.3	47	87	3	393	44	14	12	28	1.82
20721342--20721609	22	11.4	24	74	19	210	44	14	12	27	1.82
20722603--20722701	28	3.6	27	80	11	103	27	28	13	31	1.94
20724528--20724868	139	2.5	139	81	2	382	30	19	21	27	1.98
20725540--20725564	13	1.9	13	100	0	50	12	8	0	80	0.92
20729561--20729661	52	2.0	51	82	2	121	34	13	4	46	1.65
20733070--20733094	12	2.1	12	100	0	50	24	0	0	76	0.80
20737163--20737200	19	2.0	19	94	0	67	44	21	7	26	1.79
20746936--20746961	6	4.3	6	100	0	52	65	0	0	34	0.93
20749359--20749405	18	2.6	18	96	0	85	38	6	21	34	1.79
20754994--20755027	13	2.6	14	86	13	54	38	20	5	35	1.77
20767044--20767117	29	2.5	31	79	12	86	33	6	4	55	1.45
20772063--20772106	11	4.1	11	80	14	56	29	0	2	68	1.02
20773574--20773622	15	3.6	14	75	13	57	57	0	0	42	0.99
20777432--20777460	6	4.8	6	100	0	58	82	0	0	17	0.66
20779826--20779864	20	2.0	20	84	0	51	38	10	12	38	1.78
20779843--20780027	18	10.5	18	76	10	177	43	10	16	29	1.82
20779843--20780029	35	5.3	34	85	5	221	43	11	16	29	1.82
20779892--20780062	35	4.9	34	84	6	130	45	9	14	30	1.77
20780941--20781002	20	3.3	20	76	10	69	0	29	0	70	0.87
20780955--20781004	25	1.9	25	88	8	73	0	30	0	70	0.88
20781172--20781213	21	2.0	20	86	4	57	4	11	54	28	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20781538--20781637	30	3.4	30	79	4	96	44	3	17	36	1.64
20781959--20782666	75	9.4	75	81	7	710	33	19	16	30	1.94
20781959--20782691	151	4.9	150	82	7	690	34	19	16	29	1.93
20781989--20782666	226	3.0	225	83	6	784	33	19	16	29	1.94
20794492--20794530	20	2.0	20	84	0	51	38	10	12	38	1.78
20794509--20794804	35	8.5	35	77	9	234	47	10	14	27	1.76
20794509--20794768	18	14.9	17	76	9	220	46	10	13	29	1.77
20795366--20795409	15	2.9	15	83	10	54	2	20	43	34	1.64
20795670--20795707	13	2.9	14	88	11	62	0	28	0	71	0.87
20795651--20795719	13	5.2	13	77	11	59	1	20	0	78	0.83
20795698--20795751	22	2.6	22	85	8	69	0	27	0	72	0.85
20795661--20795751	13	6.7	14	77	9	55	0	27	0	72	0.85
20795814--20795855	18	2.3	19	80	12	52	0	33	0	66	0.92
20796257--20796320	30	2.2	30	83	8	78	39	9	18	32	1.83
20796328--20796389	33	1.9	32	83	3	79	46	1	20	30	1.60
20809691--20809718	7	4.0	7	100	0	56	0	14	14	71	1.15
20810374--20810414	20	2.0	20	95	0	73	34	19	14	31	1.92
20812941--20812984	18	2.4	18	84	3	52	63	2	4	29	1.26
20815036--20815085	22	2.2	23	82	10	59	30	2	6	62	1.31
20822236--20822267	15	2.1	15	94	0	55	15	6	9	68	1.36
20823783--20823951	56	3.0	56	100	0	338	44	8	5	41	1.58
20836233--20836334	50	2.0	50	100	0	204	49	5	7	37	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20838035--20838074	16	2.4	17	91	4	64	47	0	2	50	1.14
20841000--20841157	42	3.8	42	87	0	217	9	21	32	36	1.86
20841160--20841269	33	3.3	33	96	0	193	9	28	32	30	1.88
20845420--20845475	23	2.5	23	76	2	60	51	3	0	44	1.18
20846440--20846481	18	2.3	18	87	0	57	35	2	47	14	1.57
20846449--20846482	6	5.7	6	92	0	59	35	0	47	17	1.48
20848014--20848044	15	2.1	15	100	0	62	38	12	29	19	1.89
20850645--20850695	19	2.6	20	81	6	59	60	0	3	35	1.15
20852435--20852477	14	2.9	15	86	6	61	62	16	0	20	1.32
20853735--20853777	14	3.0	14	86	10	52	72	2	25	0	0.97
20856482--20856531	23	2.2	23	92	3	84	22	22	28	28	1.99
20860658--20860738	25	3.3	25	71	1	74	14	23	24	37	1.93
20860692--20860770	25	3.2	25	75	10	81	21	24	22	31	1.98
20864797--20865010	107	2.0	106	89	2	331	33	18	16	31	1.94
20865757--20865835	3	26.7	3	75	12	65	63	1	5	30	1.24
20866824--20866848	9	2.8	9	100	0	50	20	12	56	12	1.67
20875228--20875274	25	1.9	24	87	12	69	42	8	0	48	1.33
20893638--20893753	46	2.6	45	90	4	180	31	15	24	29	1.95
20898919--20898987	32	2.2	32	84	2	86	40	14	15	28	1.87
20899131--20899175	20	2.2	21	77	18	51	46	6	4	42	1.50
20899371--20899486	58	2.0	58	98	0	223	35	7	10	46	1.67
20901401--20901480	41	2.0	39	82	4	97	51	22	6	20	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20902298--20902339	16	2.5	17	84	11	59	52	11	2	33	1.51
20904319--20905289	322	3.0	322	97	0	1816	27	17	19	35	1.94
20908722--20908811	17	5.6	16	73	13	69	53	3	0	43	1.17
20908721--20908814	48	2.0	48	89	0	143	53	3	0	43	1.17
20912702--20912761	27	2.2	27	93	0	102	35	11	30	23	1.90
20926642--20926685	24	1.9	24	86	9	65	40	0	0	59	0.98
20929095--20929165	26	2.7	26	76	10	74	38	1	4	56	1.28
20929308--20929369	9	6.7	10	70	17	53	37	0	1	61	1.06
20929313--20929374	26	2.4	26	86	0	79	35	0	1	62	1.05
20939806--20939905	48	2.1	48	98	0	191	41	5	22	32	1.75
20942100--20942158	30	2.0	31	83	6	77	20	35	0	44	1.52
20946408--20946506	50	2.0	50	97	0	189	58	13	16	12	1.63
20950135--20950639	93	5.4	93	75	10	368	46	15	19	19	1.84
20950142--20950503	96	3.8	93	77	10	297	45	14	20	19	1.85
20950234--20950597	189	1.9	189	80	5	414	45	14	20	19	1.85
20950920--20950970	26	1.9	27	88	4	77	58	3	11	25	1.50
20952379--20952426	25	1.9	25	100	0	96	39	16	14	29	1.88
20953175--20953216	22	1.9	22	90	0	66	52	11	4	30	1.59
20954519--20954572	22	2.3	24	81	9	67	70	5	3	20	1.23
20956199--20956763	44	12.6	44	77	7	429	29	21	18	30	1.97
20956372--20956715	183	1.9	183	85	1	474	30	21	17	31	1.96
20958487--20958557	35	2.0	35	94	0	124	46	11	25	16	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20968684--20968742	14	4.1	14	78	8	57	76	3	3	16	1.06
20968721--20968775	26	2.1	27	86	10	78	69	5	3	21	1.25
20968690--20968767	28	2.7	31	77	18	87	73	3	3	19	1.15
20972026--20972110	30	2.8	30	85	0	116	22	40	20	17	1.92
20972941--20972983	9	4.8	9	86	11	61	44	0	0	55	0.99
20972940--20972982	18	2.4	18	92	7	70	44	0	0	55	0.99
20972941--20972993	27	2.0	27	84	0	70	47	1	0	50	1.12
20974574--20974635	30	2.1	30	81	0	70	24	38	17	19	1.93
20976693--20976747	13	4.5	13	75	13	53	47	9	1	41	1.46
20976690--20976734	23	2.0	23	90	0	72	44	11	2	42	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144