genome.fa.s11.2.7.7.80.10.50.1000.121.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  121  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37509016--37509125	33	3.3	33	83	3	159	31	7	14	46	1.72
37509102--37509143	18	2.3	18	100	0	84	23	0	26	50	1.50
37510494--37510606	28	3.6	28	66	26	75	32	7	4	54	1.49
37510496--37510595	32	3.0	32	72	18	105	32	8	4	56	1.47
37510593--37510621	15	1.9	15	100	0	58	20	10	6	62	1.50
37514753--37514882	35	3.7	35	75	8	138	27	24	17	30	1.97
37514736--37514882	70	2.1	70	88	0	213	26	24	17	31	1.97
37516327--37516395	30	2.3	30	87	0	102	20	34	23	21	1.96
37516728--37516809	19	4.5	19	69	22	68	32	14	1	51	1.51
37516730--37516834	54	1.9	54	98	0	201	33	15	0	50	1.50
37540606--37540645	20	2.0	20	90	9	64	37	10	12	40	1.77
37542357--37542396	19	2.1	20	86	9	57	42	2	37	17	1.63
37544114--37544357	30	8.4	30	73	12	179	35	14	27	22	1.93
37544122--37544358	90	2.8	82	77	12	221	35	15	27	22	1.94
37544225--37544418	60	3.2	60	73	4	176	36	11	26	24	1.90
37544205--37544387	90	2.0	90	84	4	235	36	13	27	22	1.92
37544345--37544417	30	2.4	30	90	0	110	36	9	26	27	1.87
37554276--37554315	5	8.0	5	88	0	53	55	22	0	22	1.44
37554273--37554316	15	2.9	15	86	0	61	54	22	0	22	1.45
37557760--37557807	20	2.5	19	80	6	60	14	14	6	64	1.47
37557813--37557838	11	2.4	11	100	0	52	7	11	30	50	1.67
37560666--37560731	18	3.7	18	91	0	105	33	12	13	40	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37561155--37561325	72	2.4	72	86	4	258	25	5	14	54	1.62
37567421--37567586	43	3.9	43	90	0	226	22	16	28	32	1.95
37568352--37568395	17	2.4	19	81	7	56	43	0	4	52	1.22
37568867--37568936	27	2.6	29	81	18	73	40	7	0	52	1.29
37577270--37577311	8	4.9	8	83	16	57	71	0	0	28	0.86
37577591--37577628	17	2.2	18	86	13	53	63	5	0	31	1.17
37586893--37586930	20	1.9	20	100	0	76	55	0	0	44	0.99
37594230--37594264	17	2.0	18	88	5	54	62	11	20	5	1.48
37599308--37599383	27	2.8	27	85	0	107	19	27	18	34	1.95
37604432--37604461	15	2.0	15	93	0	51	53	6	16	23	1.66
37608509--37608666	79	2.0	79	94	0	280	47	11	13	27	1.77
37611773--37611807	18	1.9	18	88	0	52	31	28	5	34	1.81
37618577--37619164	320	1.8	320	92	0	1007	29	13	20	35	1.92
37625503--37625556	21	2.6	21	84	0	72	31	11	35	22	1.89
37630510--37630542	3	11.0	3	100	0	66	66	0	0	33	0.92
37630804--37630872	16	4.2	16	92	3	120	24	1	37	36	1.65
37630804--37630872	33	2.1	32	94	2	120	24	1	37	36	1.65
37630853--37630943	45	2.0	45	85	2	121	27	6	28	37	1.82
37631108--37631142	18	2.0	17	88	5	52	54	0	0	45	0.99
37631228--37631262	18	2.0	17	88	5	52	54	0	0	45	0.99
37631348--37631382	18	2.0	17	88	5	52	54	0	0	45	0.99
37631091--37631616	120	4.4	120	96	0	955	48	4	2	43	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37631639--37631847	92	2.3	91	85	6	226	46	4	3	45	1.41
37648087--37648119	16	2.1	16	88	11	50	57	0	0	42	0.98
37665565--37665640	23	3.3	23	85	12	111	30	25	19	25	1.98
37672071--37672111	21	2.0	21	85	0	55	26	19	26	26	1.99
37673206--37673250	2	22.5	2	95	0	81	48	48	0	2	1.13
37686241--37686275	17	2.0	17	88	5	52	51	11	5	31	1.61
37691589--37691663	30	2.5	32	82	8	86	34	25	2	37	1.70
37695903--37695964	27	2.3	26	78	8	70	24	25	16	33	1.95
37702948--37702977	15	2.0	15	93	0	51	66	10	6	16	1.41
37704613--37704652	17	2.4	17	100	0	80	40	5	5	50	1.46
37709856--37709885	3	10.0	3	100	0	60	0	33	0	66	0.92
37716282--37716348	9	7.4	9	83	9	75	43	22	7	26	1.80
37716282--37716348	27	2.5	27	83	9	100	43	22	7	26	1.80
37718907--37719137	56	4.1	56	83	6	211	42	14	12	30	1.82
37718948--37719138	56	3.4	55	85	5	233	43	13	12	30	1.81
37719937--37719980	18	2.4	18	88	7	63	13	2	43	40	1.57
37730580--37730604	5	5.0	5	100	0	50	20	0	80	0	0.72
37731449--37731491	15	2.9	14	80	13	50	55	2	4	37	1.33
37736231--37736298	25	2.7	25	83	0	91	25	25	25	25	2.00
37766177--37766225	22	2.2	22	82	7	55	24	18	2	55	1.53
37766745--37766779	18	1.9	18	88	11	54	31	11	0	57	1.34
37775109--37775146	18	2.1	18	85	9	51	31	21	2	44	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37775452--37775476	13	1.9	13	100	0	50	36	0	16	48	1.46
37781314--37781364	26	2.0	26	84	7	68	29	5	1	62	1.29
37784278--37784358	40	2.0	40	100	0	162	40	17	9	32	1.82
37784756--37784786	14	2.1	15	94	5	55	54	3	6	35	1.42
37787081--37787123	22	2.0	21	95	0	68	20	27	13	34	1.91
37792198--37792352	77	2.0	77	92	0	256	34	25	8	30	1.86
37793968--37793994	6	4.5	6	100	0	54	85	0	14	0	0.61
37795396--37795450	14	3.7	15	77	13	60	67	3	5	23	1.28
37795505--37795548	18	2.2	21	80	11	58	70	0	4	25	1.06
37797667--37797928	39	6.7	40	87	7	337	25	22	27	24	2.00
37800239--37800342	42	2.5	42	93	0	172	29	16	25	28	1.97
37800239--37800364	42	3.0	42	88	5	159	30	15	24	29	1.96
37801251--37801307	24	2.5	21	76	17	60	24	3	26	45	1.69
37807561--37807638	29	2.7	28	84	11	104	25	14	30	29	1.94
37807591--37807918	174	1.9	174	95	0	593	30	14	24	31	1.94
37819123--37819253	39	2.9	46	75	21	143	34	18	18	29	1.94
37829166--37829358	50	3.7	50	79	4	179	26	21	28	23	1.99
37829323--37829554	49	4.7	49	96	0	401	31	20	25	22	1.98
37829756--37829805	20	2.5	20	81	15	68	56	4	24	16	1.57
37839879--37839935	30	1.9	30	82	7	71	43	15	7	33	1.74
37842789--37842859	25	2.8	25	91	0	106	35	15	16	32	1.91
37860566--37860733	27	6.2	27	85	4	205	44	19	19	17	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37860566--37860717	81	1.9	81	92	0	259	44	20	18	17	1.87
37861106--37861182	28	2.8	28	86	4	102	25	25	24	23	2.00
37867559--37867603	23	2.0	23	81	0	54	60	11	2	26	1.42
37880607--37880671	24	2.7	23	85	7	76	23	3	1	72	1.07
37881102--37881144	16	2.6	16	79	17	52	67	0	4	27	1.10
37882992--37883032	21	2.0	21	90	0	64	75	2	7	14	1.12
37882992--37883042	21	2.4	21	83	6	59	74	1	7	15	1.13
37885762--37885806	19	2.4	18	82	10	56	13	8	8	68	1.38
37886273--37886311	6	6.5	6	100	0	78	15	0	0	84	0.62
37891061--37891242	45	4.1	45	85	2	235	20	15	27	35	1.94
37891061--37891237	89	2.0	88	86	3	248	20	16	27	35	1.94
37893232--37893282	21	2.3	23	78	18	56	39	0	9	50	1.35
37908813--37908902	30	3.0	30	80	1	83	28	27	30	13	1.94
37909703--37909744	20	2.1	20	86	0	57	35	16	7	40	1.76
37918790--37918841	25	2.1	25	100	0	104	42	19	11	26	1.85
37919781--37919838	21	2.8	21	91	0	80	15	12	41	31	1.84
37920271--37920311	3	13.7	3	100	0	82	31	0	0	68	0.90
37924643--37924683	3	13.7	3	100	0	82	31	0	0	68	0.90
37930207--37930232	11	2.4	11	100	0	52	50	7	42	0	1.31
37934611--37934636	11	2.4	11	100	0	52	50	7	42	0	1.31
37935297--37935345	6	8.2	6	93	0	71	36	0	10	53	1.35
37939930--37940049	27	4.4	27	79	8	127	27	25	18	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37939945--37940061	27	4.4	27	79	11	116	28	23	17	29	1.97
37942048--37942225	27	6.6	27	83	3	205	26	15	28	29	1.96
37942049--37942204	82	1.9	81	88	3	233	26	15	28	29	1.96
37942045--37942225	82	2.2	81	83	2	229	27	15	27	29	1.96
37953535--37953782	43	5.8	43	84	0	300	29	31	17	22	1.97
37953544--37953782	85	2.8	85	83	3	275	29	31	16	22	1.96
37953536--37953782	128	1.9	129	84	0	334	29	30	17	22	1.97
37954153--37954185	17	1.9	17	100	0	66	48	18	9	24	1.76
37955846--37955882	15	2.5	15	95	0	65	54	18	10	16	1.71
37956398--37956542	41	3.5	41	81	2	175	31	22	22	24	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144