genome.fa.s11.2.7.7.80.10.50.1000.106.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  106  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32606063--32606154	41	2.2	41	81	11	98	39	38	0	22	1.55
32606143--32606185	15	2.9	15	93	3	70	37	30	0	32	1.58
32606369--32606425	16	3.7	15	77	15	62	29	43	3	22	1.70
32606441--32606477	14	2.6	14	91	0	56	35	43	0	21	1.53
32605973--32606577	291	2.1	286	87	5	862	41	26	2	29	1.68
32606725--32607280	227	2.5	226	91	1	880	26	27	22	23	2.00
32606725--32607280	113	4.9	113	93	1	871	26	27	22	23	2.00
32609965--32610028	26	2.4	27	86	5	94	42	9	23	25	1.84
32609965--32610052	27	3.3	27	82	3	97	43	11	23	21	1.85
32614294--32614471	27	6.6	26	80	6	169	26	16	28	28	1.97
32614295--32614450	82	1.9	81	86	3	224	26	16	28	28	1.97
32614291--32614471	82	2.2	81	82	2	220	27	16	28	28	1.97
32614376--32614482	27	3.9	27	81	1	79	26	15	28	28	1.96
32626508--32626545	17	2.2	17	86	9	51	36	28	5	28	1.79
32628305--32628352	15	3.1	15	77	11	51	54	0	10	35	1.35
32629074--32629112	16	2.4	17	87	8	55	15	2	17	64	1.41
32633411--32633455	22	2.0	22	87	8	65	28	0	20	51	1.48
32633632--32633669	16	2.4	17	86	8	53	23	2	13	60	1.45
32634589--32634617	15	1.9	15	100	0	58	68	6	10	13	1.37
32636689--32636725	18	2.1	18	89	0	56	45	10	8	35	1.69
32641814--32641861	24	2.0	24	95	0	87	18	20	18	41	1.90
32644085--32644122	19	2.0	19	100	0	76	36	5	10	47	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32662053--32662240	51	3.7	51	80	4	204	30	27	15	27	1.96
32672824--32672880	12	4.8	12	73	16	55	10	15	3	70	1.29
32673906--32673937	12	2.7	12	100	0	64	12	6	6	75	1.19
32675896--32675938	18	2.5	16	82	14	50	34	13	4	46	1.65
32676402--32676440	19	2.1	19	85	4	53	38	15	15	30	1.88
32678571--32678600	15	2.0	15	93	0	51	73	10	6	10	1.25
32681956--32682300	172	2.0	173	97	0	656	37	14	14	33	1.87
32683755--32683788	15	2.1	16	89	10	52	55	5	0	38	1.24
32684775--32684816	18	2.4	18	88	11	61	57	0	0	42	0.99
32690733--32690813	31	2.6	31	94	0	117	30	11	14	43	1.81
32690804--32690831	14	2.0	14	100	0	56	28	14	21	35	1.92
32690769--32690862	45	2.1	45	93	0	161	30	11	17	40	1.85
32690814--32691170	31	11.6	31	86	2	452	29	9	17	43	1.81
32690738--32690886	76	2.0	76	93	0	253	30	10	16	42	1.82
32690814--32691170	92	3.9	92	85	1	482	29	9	17	43	1.81
32690814--32691170	123	2.9	123	88	2	502	29	9	17	43	1.81
32695427--32695471	20	2.2	20	96	0	81	37	20	22	20	1.94
32696411--32696457	12	4.0	12	77	5	51	4	23	0	72	1.02
32696417--32696452	16	2.2	16	90	5	54	5	22	0	72	1.05
32700037--32700081	20	2.2	20	92	0	72	35	20	22	22	1.96
32700489--32700607	27	4.4	27	86	2	168	32	16	15	34	1.91
32700489--32700607	54	2.2	54	90	3	186	32	16	15	34	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32703355--32703622	76	3.5	76	100	0	536	27	19	17	35	1.94
32704962--32705000	20	2.0	20	94	0	69	53	2	0	43	1.14
32704953--32705059	37	2.9	35	72	16	92	51	2	1	43	1.27
32718809--32718848	18	2.2	18	95	0	71	17	0	25	57	1.40
32718809--32718848	9	4.4	9	84	12	55	17	0	25	57	1.40
32719043--32719389	127	2.8	126	88	3	504	28	17	24	29	1.97
32724326--32724391	14	4.5	14	88	7	96	22	12	3	62	1.43
32724326--32724391	29	2.2	30	97	2	125	22	12	3	62	1.43
32724326--32724394	15	4.6	15	90	5	113	23	13	2	60	1.46
32724432--32724481	12	4.2	12	89	0	73	20	0	10	70	1.16
32726351--32726390	18	2.2	18	86	0	53	67	5	20	7	1.34
32729507--32729553	24	2.0	24	95	0	85	53	10	8	27	1.64
32736574--32736670	30	3.2	30	75	2	106	27	26	16	28	1.97
32738913--32738983	37	1.9	37	86	11	101	76	2	18	2	1.04
32738923--32738972	6	8.2	6	83	14	50	76	2	20	2	0.99
32745965--32746124	48	3.3	47	85	3	194	31	18	15	35	1.91
32745990--32746138	48	3.1	48	87	2	210	34	18	14	32	1.91
32746929--32746966	17	2.3	17	86	13	53	23	0	5	71	1.07
32754385--32754435	23	2.2	23	82	0	57	19	0	19	60	1.36
32755802--32755845	20	2.2	20	84	8	54	59	4	4	31	1.38
32756908--32756996	7	13.0	7	74	2	65	31	33	0	34	1.58
32756925--32757009	14	6.2	14	73	5	75	30	31	0	37	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32756925--32756993	26	2.6	27	83	6	86	28	34	0	36	1.58
32756960--32757009	21	2.4	21	83	3	57	30	32	0	38	1.58
32757039--32757077	20	2.0	20	85	10	53	17	12	2	66	1.35
32762272--32762311	20	2.1	19	86	9	55	55	0	7	37	1.29
32762724--32762782	22	2.7	21	80	12	73	32	3	20	44	1.68
32767869--32767927	22	2.7	21	80	12	73	32	3	20	44	1.68
32771097--32771139	22	2.0	22	86	4	61	25	25	2	46	1.65
32771336--32771456	37	3.1	37	75	12	127	35	23	16	23	1.95
32771327--32771437	37	2.8	40	79	9	138	34	24	16	25	1.95
32772282--32772347	21	3.0	21	76	20	71	1	33	0	65	1.02
32772291--32772372	25	3.2	25	77	8	85	3	28	0	68	1.06
32772288--32772354	12	5.8	12	74	22	63	1	32	0	65	1.02
32772288--32772355	21	3.0	21	74	18	66	1	32	0	66	1.01
32772389--32772546	5	31.8	5	97	1	291	58	0	0	41	0.98
32775646--32775693	25	2.0	25	91	4	80	45	10	4	39	1.58
32782898--32782965	34	1.9	34	91	5	109	22	25	1	51	1.56
32790246--32791098	35	24.3	35	99	0	1670	37	14	11	37	1.82
32790246--32791103	17	48.8	18	84	15	369	37	14	11	37	1.82
32791498--32792084	207	2.8	207	92	0	951	29	22	17	30	1.97
32792090--32792374	88	3.4	86	82	7	336	23	22	24	30	1.99
32793331--32793409	1	79.0	1	76	0	68	0	12	0	87	0.55
32793337--32793408	9	7.7	9	86	7	99	0	12	0	87	0.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32793332--32793408	29	2.7	29	91	4	120	0	12	0	87	0.56
32793331--32793407	28	2.6	30	86	8	106	0	12	0	87	0.56
32794355--32795936	789	2.0	789	94	1	2812	27	21	18	32	1.97
32799307--32799382	22	3.7	21	76	15	68	40	17	6	35	1.75
32799343--32799433	35	2.5	37	89	8	141	36	16	10	36	1.84
32799357--32799412	17	3.5	15	88	9	60	35	16	10	37	1.83
32799343--32799433	19	4.9	19	89	8	152	36	16	10	36	1.84
32802231--32802342	40	2.8	40	86	5	156	24	25	23	26	2.00
32805607--32805697	19	4.9	19	86	8	134	38	10	16	34	1.84
32805615--32805685	35	2.0	36	91	2	117	38	11	15	35	1.83
32805619--32805697	35	2.2	35	86	6	104	37	11	16	34	1.85
32810820--32810878	6	9.8	6	75	17	52	84	0	15	0	0.62
32810810--32810878	7	9.7	7	77	19	72	84	0	15	0	0.63
32810808--32810878	14	5.2	13	86	8	88	84	0	15	0	0.62
32810808--32810878	27	2.5	28	84	8	92	84	0	15	0	0.62
32810809--32810878	8	8.6	8	80	19	67	84	0	15	0	0.63
32811837--32812315	43	11.3	42	60	19	129	32	23	22	22	1.98
32811827--32812383	84	6.6	83	87	3	738	31	22	22	22	1.98
32811881--32812101	41	5.3	42	63	18	111	30	23	23	21	1.99
32812373--32812644	92	3.0	92	85	2	370	31	17	23	27	1.97
32812594--32812786	44	4.4	44	89	0	296	29	14	27	28	1.95
32812809--32812909	45	2.3	43	78	14	118	34	13	27	23	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32812824--32812911	45	2.0	45	88	4	133	32	13	27	26	1.94
32812695--32812947	130	2.0	129	81	7	298	29	14	27	28	1.95
32813259--32813347	19	4.8	19	87	8	139	37	11	14	37	1.82
32813280--32813335	18	3.5	15	81	18	60	37	10	16	35	1.83
32813267--32813347	35	2.2	37	91	6	130	37	12	13	37	1.83
32817108--32817329	64	3.5	64	82	0	300	27	18	15	37	1.91
32817555--32817653	43	2.2	44	84	8	130	33	12	22	32	1.91
32817497--32818251	177	4.3	176	82	5	875	30	18	23	27	1.97
32817497--32818254	351	2.2	352	86	4	1030	31	17	23	27	1.97
32818414--32818441	8	3.5	8	100	0	56	78	0	0	21	0.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144