genome.fa.s11.2.7.7.80.10.50.1000.101.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  101  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30946813--30946928	40	2.6	45	77	15	134	48	11	9	31	1.71
30946835--30946920	40	2.2	40	93	0	145	45	13	10	30	1.78
30949047--30949111	26	2.6	26	92	4	107	21	23	1	53	1.54
30954087--30954121	17	2.1	17	89	5	54	34	5	11	48	1.63
30954108--30954162	20	2.7	19	86	10	74	38	12	12	36	1.82
30954131--30954200	37	1.9	36	88	8	106	37	7	11	44	1.68
30958989--30959027	19	2.0	20	90	5	62	41	28	12	17	1.87
30963981--30964006	7	3.7	7	100	0	52	42	0	30	26	1.56
30965394--30965437	22	2.0	22	90	0	70	27	36	4	31	1.77
30972204--30972259	10	5.6	10	75	23	55	28	32	16	23	1.96
30972195--30972259	20	3.2	20	88	0	103	26	33	16	23	1.96
30977984--30978035	23	2.3	22	75	21	54	9	21	1	67	1.29
30978051--30978084	18	1.9	18	94	5	61	23	23	0	52	1.47
30978756--30978807	22	2.4	22	96	0	95	36	28	7	26	1.84
30981289--30981341	6	9.0	6	77	4	54	73	1	20	3	1.08
30981291--30981368	36	2.2	36	86	6	106	66	3	23	6	1.31
30986046--30986086	16	2.7	15	81	7	55	56	0	9	34	1.32
30989575--30989623	16	3.1	16	84	0	71	36	4	36	22	1.73
30989837--30989878	15	2.7	16	82	14	52	52	2	0	45	1.13
30989846--30989887	15	2.9	15	82	10	52	52	0	0	47	1.00
30989872--30990059	61	3.1	61	69	17	192	48	6	1	43	1.39
30989952--30989998	16	3.0	16	78	12	53	51	2	0	46	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30989835--30990081	120	2.0	120	97	0	467	49	6	2	42	1.39
30989903--30990099	59	3.4	57	70	15	184	46	6	3	43	1.45
30993457--30993511	24	2.3	24	78	6	58	70	1	16	10	1.23
31001268--31001331	18	3.4	18	76	16	58	68	3	18	9	1.30
31003294--31003345	25	2.1	25	88	0	77	28	1	9	59	1.40
31004141--31004234	45	2.1	45	86	7	131	24	17	21	37	1.94
31004151--31004243	45	2.0	46	87	6	136	23	17	22	36	1.94
31008945--31009003	18	3.1	19	83	11	68	66	0	25	8	1.20
31008964--31009004	21	1.9	22	90	5	66	63	0	24	12	1.28
31027984--31028029	22	2.2	22	84	7	60	26	10	8	54	1.64
31031521--31031615	26	3.6	26	68	13	70	5	21	5	68	1.29
31031568--31031619	15	3.3	15	75	8	50	1	21	1	75	1.00
31037420--31037522	42	2.5	42	95	0	179	27	21	26	25	1.99
31044924--31044968	20	2.2	20	84	7	56	35	8	13	42	1.75
31047173--31047205	11	2.8	12	86	13	50	72	0	18	9	1.10
31047281--31047310	15	2.1	15	93	6	53	63	0	30	6	1.20
31053856--31053909	20	2.7	20	73	2	54	40	5	9	44	1.60
31059685--31059756	36	2.0	35	84	7	92	36	6	25	31	1.82
31060054--31060147	48	2.0	48	85	4	127	22	14	20	42	1.88
31078885--31079114	40	5.8	40	92	1	327	26	19	29	25	1.98
31083322--31083360	17	2.3	17	95	0	69	30	20	30	17	1.96
31084014--31084042	12	2.4	12	100	0	58	6	20	13	58	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31084929--31085330	201	2.0	201	100	0	804	41	10	17	30	1.83
31090611--31090762	27	5.6	27	93	3	232	30	28	13	26	1.94
31090611--31090787	55	3.2	55	90	0	264	31	29	13	25	1.94
31098430--31098607	27	6.6	27	84	3	205	29	28	15	26	1.96
31098451--31098606	82	1.9	81	88	3	233	29	28	15	26	1.96
31100291--31100334	19	2.1	21	88	12	65	47	4	11	36	1.60
31112650--31112737	30	2.9	31	75	12	92	21	26	17	35	1.95
31114030--31114096	25	2.7	26	81	11	86	25	34	4	35	1.76
31114028--31114091	24	2.5	25	82	10	85	25	34	4	35	1.77
31119468--31119510	21	2.0	21	100	0	86	41	18	9	30	1.82
31130046--31130243	50	3.8	51	83	5	211	27	19	27	26	1.99
31130053--31130243	100	1.9	102	84	6	260	26	19	27	26	1.99
31130050--31130293	100	2.4	100	80	4	247	27	19	25	26	1.99
31132831--31133121	50	5.8	50	83	0	314	21	28	20	28	1.98
31138444--31138735	50	5.8	50	88	1	406	21	30	21	26	1.99
31138395--31138735	100	3.4	100	84	3	402	22	29	21	26	1.99
31138395--31138736	150	2.3	150	83	4	422	22	28	21	27	1.99
31139517--31139578	30	2.0	31	90	3	99	16	20	29	33	1.94
31141991--31142038	17	2.8	18	76	20	57	58	0	0	41	0.98
31142848--31142901	19	3.0	19	92	7	87	61	0	0	38	0.96
31142846--31142907	10	6.5	10	76	9	58	61	0	0	38	0.96
31147328--31147385	26	2.3	25	83	16	75	63	1	1	32	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31147645--31147713	10	6.9	10	77	11	70	62	5	0	31	1.19
31147661--31147763	19	5.1	19	80	14	109	58	4	0	36	1.20
31147734--31147773	20	2.0	20	90	4	64	65	2	0	32	1.06
31153784--31153828	15	3.1	15	83	3	56	4	15	2	77	1.02
31154348--31154583	50	4.7	49	73	9	181	26	19	23	31	1.98
31154347--31154583	100	2.4	100	85	5	318	26	18	23	31	1.98
31156121--31156330	40	5.3	39	89	4	242	25	21	27	25	1.99
31156068--31156330	120	2.2	120	82	4	309	25	21	27	25	1.99
31156069--31156365	80	3.7	80	81	6	230	26	21	27	24	1.99
31164071--31164280	40	5.3	39	89	4	242	25	21	27	25	1.99
31164018--31164280	120	2.2	120	82	4	309	25	21	27	25	1.99
31164019--31164315	80	3.7	80	81	6	230	26	21	27	24	1.99
31165702--31165965	50	5.3	49	72	8	237	26	18	22	32	1.97
31165666--31165976	100	3.1	99	92	0	505	26	19	22	31	1.98
31166031--31166296	43	6.2	43	93	0	433	23	19	24	33	1.97
31168593--31168619	14	1.9	14	100	0	54	51	7	0	40	1.30
31169007--31169053	24	2.0	24	100	0	94	38	36	4	21	1.73
31171893--31171925	13	2.3	15	85	15	52	42	9	0	48	1.35
31176679--31176703	12	2.1	12	100	0	50	8	16	40	36	1.77
31177855--31177956	42	2.4	42	91	0	159	23	25	21	29	1.99
31181937--31181993	25	2.3	25	93	0	96	31	22	19	26	1.98
31181942--31182002	25	2.4	25	89	5	79	29	24	18	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31183222--31183263	12	3.5	12	100	0	84	19	30	33	16	1.94
31187079--31187158	42	1.9	42	84	5	108	25	23	27	23	2.00
31188722--31188770	25	2.0	25	87	0	71	28	26	14	30	1.95
31188762--31188850	25	3.5	25	78	7	99	23	19	23	33	1.97
31191798--31191830	13	2.5	13	95	0	57	33	27	15	24	1.95
31196484--31196570	25	3.5	25	84	6	95	24	27	18	29	1.98
31196501--31196595	25	3.8	25	84	1	111	22	24	23	30	1.99
31198899--31198937	17	2.2	18	86	13	55	38	0	5	56	1.22
31198897--31198938	18	2.3	18	77	22	52	38	0	4	57	1.20
31203898--31203922	11	2.3	11	100	0	50	48	20	8	24	1.76
31205945--31205971	11	2.5	11	100	0	54	14	0	7	77	0.97
31207491--31207516	9	2.9	9	100	0	52	69	11	0	19	1.18
31209033--31209112	40	2.0	40	97	0	151	22	23	15	38	1.92
31216227--31216358	42	3.1	41	80	5	147	33	25	14	27	1.94
31218719--31218873	44	3.7	42	72	17	126	25	17	28	29	1.97
31229017--31229207	101	1.9	101	84	4	260	28	13	23	34	1.93
31235657--31235690	16	2.1	16	88	0	50	41	2	20	35	1.68
31239487--31239518	16	2.0	16	93	0	55	25	15	0	59	1.36
31239742--31239883	51	2.8	51	81	6	171	33	27	16	22	1.96
31239742--31239912	51	3.4	50	78	4	164	32	28	15	23	1.96
31239884--31239977	48	2.0	48	97	2	181	28	35	10	25	1.89
31240152--31240183	16	2.0	16	93	0	55	43	9	6	40	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31255111--31255352	99	2.4	103	84	6	305	21	29	21	26	1.99
31255062--31255352	50	5.7	50	82	6	311	23	28	21	26	1.99
31255164--31255352	106	1.8	98	86	8	243	21	31	22	24	1.98
31265908--31265971	25	2.7	23	83	11	76	26	21	21	29	1.99
31265919--31265996	25	3.2	24	81	7	77	28	20	20	30	1.98
31267333--31267380	25	1.9	25	86	0	69	33	20	18	27	1.96
31277074--31277211	39	3.5	39	83	5	163	30	3	21	44	1.69
31280582--31280620	20	2.0	20	94	0	69	48	2	0	48	1.15
31281820--31281949	66	2.0	66	96	0	242	38	10	15	35	1.82
31282191--31282216	11	2.4	11	100	0	52	61	15	0	23	1.33

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144