genome.fa.s11.2.7.7.80.10.50.1000.65.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  65  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19686893--19686962	26	2.7	26	91	4	106	45	1	8	44	1.43
19701644--19701669	13	2.0	13	100	0	52	30	15	0	53	1.42
19705826--19705945	64	1.9	63	92	1	204	36	19	13	30	1.90
19708000--19708076	36	2.2	36	86	6	104	16	11	15	55	1.68
19708605--19708741	69	2.0	69	84	5	179	54	4	6	35	1.47
19713037--19713079	21	2.1	21	95	4	79	67	4	0	27	1.10
19713921--19713949	3	10.0	3	92	7	51	68	0	0	31	0.89
19726623--19726747	50	2.5	50	86	1	171	30	30	16	23	1.96
19727358--19727486	57	2.3	57	86	6	174	50	6	17	25	1.69
19727460--19727498	6	6.3	6	94	5	69	69	0	15	15	1.20
19728443--19728474	8	4.0	8	100	0	64	50	0	0	50	1.00
19729256--19729302	24	2.0	24	84	16	62	31	0	17	51	1.46
19729461--19729598	40	3.5	40	72	6	120	26	20	23	28	1.99
19737841--19737870	3	10.0	3	100	0	60	66	0	0	33	0.92
19738462--19738503	22	1.9	22	95	0	75	33	9	2	54	1.46
19740165--19740217	27	2.0	27	85	7	72	75	3	1	18	1.05
19740154--19740227	10	7.7	10	71	21	52	72	2	1	22	1.04
19740176--19740227	19	2.9	18	86	8	70	76	3	0	19	0.93
19742488--19742592	55	1.9	55	88	3	158	36	18	11	34	1.86
19751686--19751831	73	2.0	73	97	0	274	28	27	10	33	1.90
19753870--19754019	79	1.9	75	81	6	174	39	19	8	32	1.82
19754091--19754176	37	2.3	37	78	7	95	60	1	2	36	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19754309--19754387	10	8.3	9	73	15	61	64	0	7	27	1.20
19754324--19754387	29	2.2	30	91	2	112	60	0	7	31	1.25
19754355--19754394	19	2.0	21	90	9	66	57	0	12	30	1.36
19755510--19755560	13	3.9	13	77	10	59	37	25	5	31	1.80
19758761--19758807	25	2.0	23	84	16	60	70	8	6	14	1.32
19759610--19760397	44	18.3	43	70	16	340	27	21	20	29	1.98
19759638--19760305	128	5.2	127	76	11	540	27	21	21	29	1.98
19759638--19760397	172	4.4	172	77	9	660	27	22	20	29	1.98
19759713--19760261	216	2.6	215	84	5	709	27	21	20	29	1.98
19761618--19761642	11	2.3	11	100	0	50	0	8	0	92	0.40
19769326--19770139	407	2.0	407	98	0	1583	21	28	13	37	1.91
19782942--19783013	33	2.3	29	74	21	72	26	8	20	44	1.80
19782950--19783013	33	1.9	34	90	3	103	26	7	21	43	1.80
19785368--19785410	20	2.2	19	84	12	52	48	11	2	37	1.52
19786117--19786171	27	2.0	27	100	0	110	7	10	7	74	1.21
19788331--19788364	16	2.1	17	94	5	61	64	0	11	23	1.26
19789307--19789347	20	2.0	21	85	4	57	56	0	9	34	1.32
19790052--19790438	30	12.9	30	80	8	367	33	8	16	41	1.79
19790052--19790377	94	3.6	90	81	9	328	31	8	16	42	1.78
19790331--19790376	23	2.0	23	91	0	74	30	13	15	41	1.85
19790271--19790424	83	1.9	83	87	2	229	34	12	14	38	1.83
19796210--19796234	11	2.3	11	100	0	50	32	24	20	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19808869--19808958	26	3.5	26	77	8	94	34	24	14	26	1.94
19808815--19809018	77	2.6	78	78	6	198	32	24	14	28	1.94
19808847--19808992	51	2.8	52	78	8	145	33	23	15	27	1.95
19808962--19809012	26	2.0	26	88	0	75	31	27	9	31	1.89
19812020--19812095	24	3.1	24	82	1	71	22	34	1	42	1.62
19812242--19812278	17	2.1	18	90	5	58	56	5	0	37	1.22
19812973--19813044	34	2.1	34	100	0	144	31	5	19	43	1.74
19815446--19815526	36	2.3	34	80	18	94	40	2	4	51	1.37
19815651--19815696	19	2.5	18	82	3	56	36	0	4	58	1.18
19815808--19815862	21	2.6	21	85	8	76	27	36	9	27	1.87
19819384--19819539	70	2.2	70	95	0	285	48	13	0	37	1.43
19819438--19819619	45	3.9	45	80	9	222	48	13	0	37	1.42
19819425--19819609	95	1.9	95	96	0	343	47	13	0	39	1.43
19819425--19819564	25	5.8	25	78	11	166	45	14	0	40	1.45
19824689--19824714	7	3.7	7	100	0	52	57	15	0	26	1.38
19825830--19825884	27	2.0	29	92	7	96	58	1	0	40	1.09
19825940--19826016	11	6.9	11	75	19	63	41	2	31	24	1.69
19825940--19826016	22	3.5	22	77	22	81	41	2	31	24	1.69
19825940--19826015	33	2.3	35	81	9	95	40	2	31	25	1.69
19826716--19826772	22	2.7	22	83	5	64	52	0	0	47	1.00
19826773--19826817	14	3.2	14	80	0	54	48	0	4	46	1.22
19826796--19826841	25	1.9	24	83	16	60	47	0	4	47	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19828066--19828091	6	4.3	6	100	0	52	53	0	0	46	1.00
19829588--19829626	11	3.5	11	86	6	53	58	12	2	25	1.47
19835761--19835936	87	2.0	87	91	0	280	36	21	14	27	1.92
19847253--19847296	21	2.0	22	86	4	63	15	13	20	50	1.78
19857019--19857242	79	2.8	78	84	6	281	25	27	22	24	2.00
19857019--19857242	40	5.7	40	87	6	280	25	27	22	24	2.00
19864951--19865042	39	2.3	39	88	5	132	25	28	22	23	2.00
19864932--19865095	40	4.1	40	80	10	176	24	27	23	25	2.00
19867494--19867609	49	2.4	49	91	0	187	45	15	9	29	1.77
19867494--19867625	49	2.7	50	83	4	171	46	14	9	29	1.77
19871105--19871645	269	2.0	269	97	0	1010	33	19	21	25	1.97
19871818--19871852	18	1.9	18	88	0	52	22	20	25	31	1.98
19871952--19871987	18	2.0	18	94	0	63	30	16	30	22	1.96
19873100--19873152	15	3.7	15	76	16	58	37	24	11	26	1.89
19873953--19873982	5	6.0	5	100	0	60	40	0	0	60	0.97
19879944--19879979	7	5.0	7	86	6	54	41	0	0	58	0.98
19879942--19880000	15	3.8	15	76	13	57	37	1	0	61	1.07
19879938--19879987	22	2.3	22	96	3	93	38	0	0	62	0.96
19882815--19883255	113	3.9	113	74	7	381	31	17	24	26	1.97
19883315--19883353	21	1.9	20	89	5	60	20	0	35	43	1.52
19883345--19883391	15	3.3	14	77	13	51	23	0	25	51	1.49
19885619--19885654	17	2.1	17	90	10	56	25	0	36	38	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19885619--19885654	9	4.2	8	86	13	54	25	0	36	38	1.56
19887392--19887652	9	29.4	9	80	9	272	46	16	3	33	1.62
19887392--19887591	63	3.3	63	85	13	312	48	16	2	34	1.57
19892548--19892775	42	5.4	41	81	9	246	24	25	20	30	1.99
19892548--19892758	85	2.5	85	90	6	322	23	25	19	31	1.98
19894267--19894311	23	2.0	23	86	8	65	68	2	17	11	1.29
19898218--19898279	18	3.3	18	70	16	63	41	9	6	41	1.63
19898203--19898279	38	2.0	38	97	0	145	44	7	5	42	1.55
19899536--19899592	26	2.4	22	88	11	78	35	1	1	61	1.17
19905959--19905988	15	2.0	15	93	0	51	23	13	20	43	1.86
19913551--19913622	27	2.7	27	80	8	76	34	9	11	44	1.73
19919876--19919952	9	8.4	9	74	7	66	72	2	1	23	1.04
19919970--19920066	27	3.6	27	74	16	76	57	1	1	40	1.12
19919975--19920010	17	2.1	17	89	5	54	61	2	0	36	1.11
19920269--19920333	33	2.0	32	82	14	80	36	1	3	58	1.23
19920274--19920333	31	1.9	32	83	16	81	33	1	3	61	1.22
19921380--19921428	23	2.1	23	78	17	57	67	0	2	30	1.02
19929291--19929355	27	2.4	27	84	0	76	36	23	20	20	1.95
19937976--19938039	25	2.6	24	74	13	67	17	1	6	75	1.09
19947405--19947446	20	2.1	20	86	0	57	16	33	7	42	1.75
19962518--19962659	37	3.8	36	71	15	110	38	11	12	37	1.79
19966751--19967194	126	3.5	126	94	0	728	32	17	20	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19969249--19969346	51	1.9	51	89	4	153	46	2	24	26	1.63
19969489--19969567	40	2.0	40	84	0	104	22	30	26	20	1.98
19976380--19976404	12	2.1	12	100	0	50	40	0	0	60	0.97
19977514--19977733	87	2.5	87	83	4	282	38	9	28	24	1.86
19977460--19977671	58	3.7	58	81	5	266	38	8	28	24	1.85
19977485--19977802	58	5.5	58	78	5	234	38	11	26	23	1.88
19977485--19977801	29	10.9	29	75	8	189	38	11	26	23	1.88
19982841--19982871	8	3.9	8	100	0	62	74	0	0	25	0.82
19986630--19986681	25	2.1	25	88	0	77	38	25	17	19	1.93
19986651--19986730	41	2.0	41	87	0	115	38	21	18	21	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144