genome.fa.s11.2.7.7.80.10.50.1000.87.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  87  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26326953--26326983	11	2.8	11	95	0	53	83	3	0	12	0.75
26326963--26327004	19	2.2	19	86	0	57	80	2	2	14	0.90
26327485--26328108	313	2.0	313	100	0	1248	20	24	19	34	1.96
26328217--26330645	46	52.6	46	87	0	3303	29	29	16	25	1.97
26329060--26329169	55	2.0	55	96	0	202	32	29	17	20	1.96
26331836--26331870	9	3.5	10	88	11	54	8	11	0	80	0.92
26331853--26331883	12	2.5	13	94	5	55	9	12	0	77	0.99
26331836--26331869	10	3.5	10	92	8	52	8	11	0	79	0.94
26332710--26332773	10	6.5	10	83	15	80	7	0	12	79	0.92
26332710--26332771	17	3.5	17	83	14	65	6	0	11	82	0.84
26332710--26332769	28	2.1	29	87	9	88	6	0	11	81	0.86
26334813--26334855	19	2.3	17	78	21	50	41	13	23	20	1.88
26336438--26336637	100	2.0	100	100	0	400	37	18	14	31	1.90
26336797--26336853	20	2.7	22	71	20	59	61	8	10	19	1.54
26337385--26337474	18	5.1	18	72	10	69	55	4	5	34	1.43
26337383--26337472	3	30.3	3	70	10	51	57	4	5	32	1.42
26338520--26338576	27	2.1	28	83	9	73	8	3	35	52	1.50
26343755--26344045	142	2.0	145	90	2	462	43	4	10	41	1.59
26343761--26344082	142	2.2	142	83	8	416	44	4	10	41	1.58
26348619--26348647	15	1.9	15	100	0	58	37	13	20	27	1.91
26371259--26371462	95	2.2	95	84	0	257	27	24	15	32	1.95
26371183--26371483	94	3.2	94	78	4	261	27	25	15	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26381162--26381229	30	2.2	29	82	14	84	57	0	0	42	0.98
26385049--26385119	22	3.2	22	88	4	90	39	12	15	32	1.85
26385119--26385149	16	1.9	16	93	0	53	29	12	25	32	1.93
26385261--26385297	19	1.9	19	88	0	56	32	10	10	45	1.74
26385304--26385343	19	2.1	19	90	0	62	37	10	10	42	1.72
26387940--26387978	17	2.3	17	86	0	51	28	23	5	43	1.75
26388457--26388522	28	2.4	28	74	2	71	31	21	24	22	1.98
26388733--26389091	32	11.4	31	79	4	369	36	22	21	20	1.95
26388736--26389088	63	5.6	63	92	1	555	35	21	21	20	1.96
26389280--26389350	23	3.0	23	85	4	106	47	21	5	25	1.72
26389278--26389403	24	5.2	24	76	2	110	46	18	6	29	1.73
26389445--26389608	27	6.1	27	85	4	199	23	15	17	42	1.88
26401711--26401758	22	2.2	22	92	7	80	41	10	0	47	1.37
26406715--26406755	7	5.9	7	97	0	73	41	14	2	41	1.59
26406890--26406979	20	4.5	20	69	5	74	36	18	32	12	1.88
26412249--26412342	48	2.0	48	93	0	161	24	24	12	38	1.90
26418303--26418338	17	2.1	17	100	0	72	47	16	8	27	1.75
26422514--26422538	12	2.1	12	100	0	50	16	0	8	76	1.02
26434493--26434618	40	3.2	40	84	0	171	32	24	21	21	1.98
26438844--26439090	50	4.8	50	80	4	228	23	25	22	29	1.99
26444093--26444567	252	1.9	252	99	0	932	33	20	10	35	1.87
26447421--26447458	18	2.1	18	85	9	51	63	5	5	26	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26447479--26447522	19	2.3	19	84	0	61	75	2	4	18	1.09
26449081--26450235	143	8.1	143	85	0	1432	27	21	19	30	1.98
26462897--26462944	20	2.4	20	85	0	60	50	10	6	33	1.62
26464066--26464189	29	4.3	29	75	4	115	25	24	12	38	1.89
26464264--26464293	12	2.5	12	100	0	60	50	6	6	36	1.55
26465758--26465784	14	1.9	14	100	0	54	59	33	0	7	1.25
26466108--26466157	19	2.6	19	84	6	66	20	12	0	68	1.21
26467469--26467516	20	2.4	20	85	0	60	50	10	6	33	1.62
26469968--26469998	15	2.1	15	93	0	53	67	16	0	16	1.23
26470009--26470046	13	2.8	14	80	19	53	65	7	5	21	1.38
26471234--26471268	4	9.0	4	87	6	54	77	2	0	20	0.90
26471232--26471268	16	2.4	15	91	8	65	78	2	0	18	0.87
26473670--26473716	14	3.4	14	71	11	51	25	0	6	68	1.13
26473667--26473723	28	2.0	28	100	0	114	29	0	7	63	1.21
26475326--26475377	24	2.2	24	85	0	68	53	9	3	32	1.51
26489240--26489292	10	5.2	10	80	17	56	64	0	5	30	1.17
26489238--26489287	13	4.0	12	76	23	50	64	0	4	32	1.12
26493427--26493577	40	3.8	40	77	0	140	35	21	20	21	1.96
26493459--26493563	20	5.2	20	65	4	59	36	22	20	20	1.95
26493433--26493581	80	1.9	80	84	0	199	36	23	18	20	1.95
26493516--26493595	40	2.0	40	82	0	97	35	22	18	23	1.96
26498325--26498401	39	2.1	35	81	16	84	67	7	6	18	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26502091--26502130	19	2.0	20	85	4	55	37	12	2	47	1.55
26505996--26506043	19	2.6	18	81	15	53	25	20	8	45	1.79
26514486--26515127	44	14.7	44	67	13	236	31	18	21	28	1.97
26514439--26514718	129	2.2	129	92	0	452	30	17	21	30	1.96
26514563--26514987	175	2.4	175	94	0	733	31	19	20	28	1.97
26514563--26515077	90	5.8	90	75	7	482	31	19	20	28	1.97
26514710--26515194	265	1.8	265	94	0	853	31	19	20	28	1.97
26517696--26517858	74	2.2	73	92	1	263	34	11	13	40	1.81
26517965--26518108	71	2.0	72	94	1	254	35	14	18	31	1.91
26521209--26521256	19	2.6	18	81	15	53	25	20	8	45	1.79
26522804--26522969	44	3.7	44	74	6	163	26	21	22	30	1.99
26525029--26525068	19	2.0	20	85	4	55	37	15	0	47	1.45
26534043--26534096	27	2.0	26	85	3	72	35	9	1	53	1.44
26534041--26534135	20	4.5	22	72	11	72	36	10	1	51	1.43
26534192--26534222	16	1.9	16	100	0	62	51	9	0	38	1.35
26534345--26534376	13	2.5	13	94	0	55	12	9	9	68	1.39
26534598--26534740	73	2.0	73	90	2	225	27	17	19	34	1.94
26537256--26537315	5	12.4	5	83	13	81	83	13	1	1	0.80
26537256--26537315	29	2.1	29	93	6	104	83	13	1	1	0.80
26537256--26537317	24	2.6	24	87	10	83	82	12	1	3	0.87
26538668--26540812	50	42.9	50	72	4	1161	31	21	21	25	1.98
26538668--26540812	150	14.3	150	74	3	1378	31	21	21	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26538980--26540663	100	16.8	99	86	1	2078	31	21	21	25	1.98
26540647--26540854	100	2.1	100	81	0	236	32	18	18	29	1.95
26541622--26541665	23	1.9	23	95	0	79	9	38	18	34	1.82
26541945--26541990	23	2.0	23	87	8	67	30	2	2	65	1.16
26542389--26542433	12	3.7	13	80	11	51	22	11	0	66	1.22
26542504--26542535	13	2.5	13	94	0	55	12	9	9	68	1.39
26545077--26545151	36	2.1	36	94	0	132	24	25	12	38	1.89
26552743--26553656	29	31.4	24	64	30	104	26	1	24	48	1.59
26552707--26553853	59	19.4	59	92	3	1785	26	1	25	47	1.61
26553715--26553764	7	7.3	7	84	2	57	28	4	28	40	1.74
26561551--26561742	50	3.8	50	78	7	154	26	20	30	22	1.99
26578338--26578448	37	2.8	39	72	8	109	22	20	27	29	1.99
26579127--26579177	17	3.0	17	88	0	75	37	13	15	33	1.87
26582226--26582299	38	2.0	38	89	2	114	22	9	13	54	1.68
26582862--26583741	44	19.6	44	73	11	372	30	18	22	28	1.97
26582860--26583153	133	2.2	133	81	3	349	30	19	22	27	1.98
26582904--26583741	360	2.3	360	89	1	1277	30	18	22	28	1.97
26582863--26583741	89	9.8	87	73	9	628	30	18	22	28	1.97
26585287--26585416	3	43.0	3	76	10	86	28	3	6	61	1.37
26586546--26586686	45	3.1	45	76	2	140	38	11	22	27	1.88
26586757--26586828	34	2.1	34	84	0	90	41	15	11	31	1.82
26587122--26587236	28	4.0	28	80	6	124	57	5	13	24	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26587122--26587230	56	1.9	57	85	5	150	57	4	11	25	1.53
26587929--26587967	19	2.1	19	85	9	53	53	0	28	17	1.44
26589168--26589208	21	2.0	21	85	0	55	46	0	2	51	1.14
26589346--26589420	31	2.4	31	81	2	105	54	14	5	25	1.61
26590521--26590553	16	2.2	16	89	10	52	63	3	0	33	1.10
26596267--26596323	11	5.3	10	89	10	78	26	29	0	43	1.55
26596537--26596596	16	3.4	16	69	30	50	36	1	1	60	1.17
26597520--26597552	7	4.7	7	100	0	66	27	0	15	57	1.38
26601897--26602311	126	3.3	126	89	1	625	26	20	19	33	1.96
26602514--26602556	22	1.9	22	85	4	59	46	44	0	9	1.35

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144