genome.fa.s11.2.7.7.80.10.50.1000.56.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  56  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17277678--17277772	30	3.2	30	88	10	135	41	3	20	35	1.68
17277950--17278105	76	2.1	77	88	2	235	34	21	18	25	1.96
17278957--17279019	1	63.0	1	77	0	63	0	9	1	88	0.57
17278947--17279012	8	7.4	9	86	8	75	0	12	1	86	0.64
17278954--17279019	8	8.1	8	86	9	89	0	10	1	87	0.60
17278947--17279019	15	4.9	15	81	6	85	0	12	1	86	0.64
17279649--17279737	44	2.0	44	95	0	160	33	7	7	50	1.60
17283013--17283049	4	9.2	4	93	0	65	51	2	24	21	1.61
17284735--17284841	35	3.1	34	77	7	119	49	9	12	28	1.71
17284750--17284830	17	4.8	17	76	7	76	50	9	12	27	1.71
17284823--17284861	18	2.0	20	90	9	64	41	2	12	43	1.56
17285035--17285125	19	4.7	21	74	20	90	41	9	10	37	1.74
17285249--17285282	5	6.6	5	90	6	50	64	0	2	32	1.08
17285249--17285279	16	1.9	16	93	0	53	61	0	3	35	1.12
17285758--17285803	4	12.5	4	78	17	55	0	26	0	73	0.83
17285758--17285800	18	2.4	18	88	0	68	0	25	0	74	0.82
17287003--17287487	247	2.0	246	100	0	961	27	20	24	27	1.99
17291390--17291424	10	3.6	10	92	3	54	0	17	0	82	0.66
17291391--17291454	20	3.0	20	82	10	83	1	18	4	75	1.06
17291750--17291925	30	5.9	30	82	6	198	41	3	21	33	1.71
17297562--17297592	15	2.1	15	93	0	53	41	0	3	54	1.16
17301250--17301283	16	2.1	17	88	5	52	70	17	0	11	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17308759--17309021	132	2.0	132	96	0	481	32	16	22	28	1.96
17311218--17311243	8	3.2	8	100	0	52	65	11	11	11	1.48
17316491--17316524	17	2.0	17	94	0	59	38	2	11	47	1.55
17323309--17323451	27	5.2	27	77	6	144	52	7	14	25	1.68
17323320--17323486	28	6.0	28	74	7	117	54	8	14	22	1.67
17323309--17323482	55	3.1	55	81	4	190	54	8	13	23	1.65
17330965--17331837	242	3.8	232	73	15	638	43	6	10	38	1.67
17331397--17331544	7	20.1	7	68	16	77	48	3	4	43	1.40
17331387--17331426	17	2.4	17	86	0	53	60	2	2	35	1.24
17331387--17331445	24	2.4	24	80	8	66	57	1	3	37	1.25
17331156--17331947	215	3.6	214	75	14	641	44	6	9	39	1.63
17332124--17332153	15	2.0	15	93	0	51	50	0	6	43	1.28
17333916--17333968	26	2.0	27	85	7	72	41	0	5	52	1.25
17335126--17335197	31	2.4	29	81	4	81	26	15	12	45	1.81
17337926--17337999	33	2.2	33	92	0	121	21	12	0	66	1.24
17342510--17342765	45	5.8	45	72	16	180	26	25	21	27	1.99
17342601--17342758	44	3.7	44	73	13	123	29	24	20	25	1.99
17345114--17345310	98	2.0	98	94	0	349	37	24	10	27	1.88
17345450--17345594	75	2.0	70	92	6	236	49	8	12	28	1.70
17347098--17347160	30	2.1	30	93	0	108	26	4	12	55	1.57
17347285--17347318	12	2.8	12	90	0	50	67	0	0	32	0.91
17349143--17349173	8	3.9	8	95	0	53	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17349925--17349966	13	3.5	12	78	9	50	40	2	0	57	1.12
17353138--17353183	20	2.3	20	88	3	67	76	2	2	19	1.00
17353585--17353620	15	2.4	15	95	0	63	11	36	0	52	1.37
17354594--17354622	11	2.5	12	94	5	51	27	0	3	68	1.05
17363700--17363748	12	4.3	12	72	15	50	59	0	2	38	1.09
17365155--17365409	129	2.0	129	92	0	420	41	7	12	39	1.70
17374188--17374330	76	1.9	75	91	1	232	34	8	20	36	1.83
17383410--17383496	37	2.3	37	78	9	88	48	3	3	44	1.36
17392948--17393106	41	3.9	41	86	6	223	27	22	30	20	1.98
17392961--17393147	41	4.6	41	85	4	218	28	20	29	20	1.98
17400360--17400388	13	2.2	13	100	0	58	37	17	13	31	1.89
17402145--17402174	5	6.0	5	100	0	60	40	0	0	60	0.97
17403106--17403161	25	2.2	25	83	0	67	17	25	21	35	1.95
17403129--17403209	22	3.6	21	78	11	63	16	23	19	40	1.90
17407183--17407499	155	2.0	155	99	0	625	32	21	10	35	1.87
17432166--17432274	41	2.6	41	92	1	173	24	22	28	23	2.00
17439865--17439973	41	2.6	41	92	1	173	24	22	28	23	2.00
17441753--17441784	3	10.7	3	100	0	64	65	0	0	34	0.93
17446532--17446610	41	1.9	41	97	0	149	24	30	15	30	1.95
17479195--17479225	14	2.2	14	94	0	53	45	0	19	35	1.51
17479763--17479799	16	2.3	16	86	13	58	40	0	0	59	0.97
17485629--17485707	24	3.3	24	83	0	95	12	15	43	29	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17485664--17485713	24	2.1	24	92	0	82	18	18	46	18	1.85
17485724--17485797	27	2.7	27	87	0	112	13	8	39	39	1.74
17488963--17489005	22	2.0	22	95	0	77	58	6	9	25	1.54
17488968--17489014	22	2.3	19	77	19	58	61	8	6	23	1.48
17490175--17490222	19	2.5	19	80	10	53	31	4	2	62	1.26
17490196--17490236	20	2.1	19	86	4	55	24	2	2	70	1.11
17492463--17492764	162	1.9	159	86	3	435	48	18	9	23	1.78
17495214--17495240	5	5.4	5	100	0	54	81	0	18	0	0.69
17497134--17497164	4	7.8	4	100	0	62	77	22	0	0	0.77
17498371--17498410	16	2.5	16	95	0	71	35	7	27	30	1.84
17498392--17498484	44	2.1	44	86	6	125	34	4	24	36	1.75
17498591--17498719	56	2.3	56	80	9	145	51	4	0	42	1.28
17499158--17499246	43	2.1	43	97	0	169	23	20	7	48	1.75
17502243--17502767	44	11.6	44	73	8	329	29	19	16	34	1.94
17502231--17502763	95	5.8	94	74	10	290	29	19	16	34	1.94
17502422--17502767	133	2.6	132	83	4	405	29	21	16	33	1.95
17505238--17505448	90	2.4	89	84	0	269	28	19	18	33	1.95
17505238--17505493	44	5.8	44	77	5	203	28	18	17	34	1.94
17508372--17508430	31	2.0	30	83	12	77	27	10	15	47	1.77
17509039--17509378	179	1.9	179	86	0	491	25	18	24	32	1.97
17510049--17510088	21	1.9	21	84	0	53	65	5	10	20	1.42
17512639--17512677	3	13.0	3	100	0	78	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17513859--17513900	21	2.0	21	90	4	68	73	11	11	2	1.18
17522634--17522799	25	6.8	25	70	10	92	35	9	12	42	1.75
17522624--17522791	74	2.3	74	78	6	162	33	9	13	43	1.76
17524592--17524875	87	3.3	87	86	2	347	38	18	19	23	1.93
17531393--17531431	18	2.1	19	90	4	62	41	15	17	25	1.89
17532931--17532973	22	2.0	22	95	0	77	39	6	9	44	1.64
17533803--17533865	22	2.9	22	87	0	99	25	50	11	12	1.73
17538416--17538446	2	15.5	2	100	0	62	48	0	0	51	1.00
17539173--17539218	25	1.9	25	82	8	60	34	0	0	65	0.93
17539171--17539224	23	2.2	25	75	18	60	37	0	0	62	0.95
17539952--17540135	92	2.0	92	96	0	341	29	21	14	35	1.92
17542944--17543000	30	1.9	30	86	10	82	54	12	3	29	1.54
17546353--17546414	31	2.0	31	93	0	106	38	9	6	45	1.63
17546777--17546843	31	2.2	31	83	0	80	44	8	13	32	1.75
17547840--17547910	36	2.0	36	100	0	142	26	8	11	53	1.65
17549346--17549597	96	2.6	96	83	3	294	24	15	32	27	1.95
17551029--17551699	232	2.8	233	83	6	790	35	20	9	33	1.86
17551705--17551855	58	2.5	58	80	5	158	44	21	15	18	1.86
17551705--17551885	63	3.0	63	79	5	167	41	23	14	19	1.89
17557708--17557737	15	2.1	15	93	6	53	26	0	0	73	0.84
17559585--17559620	16	2.3	15	90	4	54	41	0	0	58	0.98
17559585--17559620	15	2.3	16	90	4	56	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17559945--17560484	108	5.0	107	89	5	764	30	17	18	33	1.94
17559951--17560462	217	2.4	218	94	0	891	30	17	18	33	1.95
17572165--17572263	44	2.2	44	77	7	103	30	20	22	27	1.98
17574534--17574958	108	3.9	108	93	2	658	29	17	19	33	1.95
17575447--17575619	90	1.9	90	90	3	278	35	21	9	32	1.87
17575727--17575777	19	2.7	19	81	0	66	70	1	3	23	1.14
17575700--17575813	47	2.4	46	77	2	111	64	0	3	30	1.16
17575706--17575804	10	10.5	10	69	12	50	66	1	4	28	1.16
17575727--17575805	27	2.9	27	79	7	79	69	1	3	25	1.12
17575757--17575841	27	3.2	26	75	9	73	62	1	4	31	1.23

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144