genome.fa.s11.2.7.7.80.10.50.1000.19.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  19  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5405273--5405348	30	2.5	30	87	4	82	23	3	15	56	1.56
5408247--5408279	17	2.1	16	88	11	50	51	6	9	33	1.58
5412918--5412957	20	2.0	21	90	5	64	50	10	0	40	1.36
5437448--5437481	12	2.8	12	95	0	59	35	29	5	29	1.81
5445298--5445333	17	2.1	17	90	10	56	75	0	2	22	0.94
5445291--5445333	18	2.3	18	84	11	52	74	0	4	20	1.00
5445396--5445449	10	5.8	9	79	12	56	61	3	0	35	1.14
5445974--5446028	28	2.0	28	89	7	85	36	3	5	54	1.41
5446002--5446047	21	2.3	21	88	7	69	39	0	4	56	1.19
5458185--5458361	89	2.0	89	97	0	336	23	20	32	22	1.98
5470132--5470165	3	11.3	3	100	0	68	67	0	0	32	0.91
5470191--5470229	6	6.2	6	82	11	51	76	5	0	17	0.96
5479762--5479896	40	3.5	40	73	8	134	33	23	17	25	1.96
5515369--5515394	7	3.7	7	100	0	52	26	11	0	61	1.30
5522619--5522662	23	1.9	23	90	9	72	18	0	11	70	1.16
5538567--5538612	18	2.6	18	100	0	92	19	15	19	45	1.85
5540981--5541007	2	13.5	2	100	0	54	0	51	0	48	1.00
5541007--5541046	2	20.0	2	89	0	62	55	45	0	0	0.99
5552833--5552872	15	2.5	17	84	8	57	65	0	0	35	0.93
5552833--5552894	22	2.7	22	77	5	61	58	1	0	40	1.08
5560587--5560636	17	2.7	20	78	18	70	10	0	44	46	1.37
5565226--5565275	17	2.7	20	78	18	70	10	0	44	46	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5576027--5576065	3	13.0	3	100	0	78	33	0	33	33	1.58
5592404--5592434	2	15.5	2	100	0	62	48	0	51	0	1.00
5593492--5593585	31	3.1	30	80	9	93	39	5	8	46	1.57
5593517--5593615	31	3.3	30	80	5	92	39	4	9	47	1.54
5596859--5596951	47	2.0	47	97	0	177	55	2	4	37	1.31
5599490--5599595	37	2.9	37	97	0	194	31	1	0	66	1.02
5599555--5599615	26	2.3	27	86	8	90	32	0	0	67	0.91
5599539--5599615	13	6.1	13	71	14	63	33	1	0	64	1.01
5599698--5599737	15	2.7	15	96	0	71	15	60	25	0	1.35
5600270--5600315	24	2.0	23	83	12	58	65	2	4	28	1.23
5603353--5603518	89	1.8	91	82	5	212	38	7	7	46	1.59
5606452--5606502	16	3.2	16	94	0	93	35	3	39	21	1.72
5606749--5606938	61	3.1	61	70	14	203	49	7	1	41	1.41
5606719--5606948	120	1.9	120	98	0	442	49	7	2	41	1.43
5606835--5606886	15	3.6	15	80	12	56	53	1	0	44	1.11
5606754--5606937	59	3.1	59	66	22	166	48	8	1	41	1.42
5645904--5645979	37	2.1	37	100	0	152	47	0	5	47	1.24
5646869--5646902	16	2.1	16	100	0	68	32	5	0	61	1.20
5647195--5647219	13	1.9	13	100	0	50	48	4	0	48	1.20
5647982--5648016	17	2.1	17	89	5	54	28	20	17	34	1.95
5684967--5685029	30	2.1	30	90	0	99	25	1	14	58	1.45
5685156--5685183	11	2.5	11	100	0	56	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5696657--5696683	14	1.9	14	100	0	54	18	0	0	81	0.69
5697065--5697102	11	3.6	11	93	6	62	26	5	0	68	1.11
5697552--5697576	13	1.9	13	100	0	50	8	0	24	68	1.16
5697978--5698012	12	3.0	12	91	4	54	37	2	8	51	1.47
5697871--5698228	114	3.1	114	96	1	648	41	3	14	41	1.62
5698696--5698799	41	2.5	41	93	0	172	26	19	29	24	1.98
5700465--5700494	7	4.3	7	100	0	60	43	26	0	30	1.55
5702858--5702968	57	2.0	57	96	1	206	31	12	9	46	1.73
5706894--5706945	21	2.5	21	90	0	77	32	38	7	21	1.82
5708115--5708183	28	2.4	28	83	7	77	52	2	0	44	1.16
5708129--5708191	28	2.2	28	88	5	92	46	3	0	50	1.17
5708280--5708328	24	2.0	26	84	8	66	61	4	2	32	1.26
5721974--5722024	14	3.3	15	77	22	52	47	0	1	50	1.12
5721996--5722023	14	2.0	14	100	0	56	42	0	0	57	0.99
5737571--5737683	28	4.0	28	95	3	201	38	7	0	53	1.30
5737578--5737683	55	1.9	55	98	0	203	37	7	0	54	1.29
5737684--5737720	16	2.3	17	86	9	51	83	8	2	5	0.88
5737871--5737981	18	6.2	17	74	14	75	64	0	34	0	1.00
5737873--5737944	10	6.6	10	73	17	54	68	0	31	0	0.90
5737876--5737949	14	5.1	13	71	25	51	68	0	31	0	0.89
5737876--5737955	34	2.8	28	75	24	85	67	0	32	0	0.91
5737891--5737982	38	2.5	38	89	6	138	66	0	32	1	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5737893--5737955	10	6.5	10	75	14	60	66	0	33	0	0.92
5738713--5738764	19	2.7	20	85	5	63	23	0	7	69	1.14
5738800--5738865	26	2.5	26	87	4	98	42	9	1	46	1.44
5740191--5740226	17	2.1	17	100	0	72	30	16	5	47	1.70
5743601--5743638	18	2.1	18	90	0	58	15	44	5	34	1.69
5743604--5743645	18	2.3	18	83	0	57	21	47	2	28	1.63
5744793--5744827	10	3.6	10	88	3	54	8	0	0	91	0.42
5744794--5744826	17	1.9	17	100	0	66	9	0	0	90	0.44
5744829--5744891	27	2.4	27	91	2	101	55	1	1	41	1.19
5747514--5747565	16	3.1	17	78	10	54	50	5	1	42	1.37
5753177--5753211	19	1.9	17	88	11	52	45	0	0	54	0.99
5755287--5755350	31	2.1	30	82	8	76	62	4	0	32	1.16
5755305--5755355	23	2.3	22	82	3	66	64	3	0	31	1.11
5755704--5755767	17	3.7	17	74	12	67	23	3	4	68	1.23
5758593--5758659	31	2.2	30	86	5	100	46	5	8	38	1.60
5764011--5764052	21	2.0	21	85	0	57	35	14	2	47	1.57
5782435--5782480	3	15.3	3	100	0	92	67	0	0	32	0.91
5784028--5784071	24	1.9	24	81	9	56	45	6	4	43	1.51
5786667--5786718	17	3.1	16	86	5	68	28	1	1	67	1.12
5786931--5786980	17	2.7	20	78	18	70	10	0	44	46	1.37
5794251--5794388	45	3.0	45	73	15	131	31	19	21	26	1.97
5795847--5795901	26	2.1	26	100	0	110	30	3	21	43	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5802360--5802545	46	4.0	46	86	2	248	36	8	25	29	1.86
5805107--5805292	46	4.0	46	86	2	248	30	25	7	36	1.84
5814150--5814215	30	2.2	31	83	2	80	54	12	9	24	1.66
5818184--5818247	30	2.2	28	81	8	74	20	18	4	56	1.59
5819251--5819282	10	3.1	10	91	8	55	18	0	3	78	0.89
5824004--5824459	235	1.9	235	96	0	849	38	15	26	19	1.91
5831069--5831226	85	1.9	85	81	5	194	29	19	22	28	1.98
5831017--5831301	129	2.2	129	90	0	444	30	18	21	29	1.97
5831198--5831485	85	3.3	85	71	14	257	30	18	21	29	1.97
5831149--5831580	175	2.5	175	91	1	697	30	18	21	28	1.97
5830976--5831531	44	12.7	45	68	12	201	30	19	21	28	1.97
5833050--5833113	30	2.2	28	81	8	74	20	18	4	56	1.59
5834120--5834154	11	3.2	11	83	0	52	28	0	2	68	1.04
5836965--5837008	22	2.0	22	100	0	88	45	9	9	36	1.68
5836970--5837016	22	2.2	22	88	3	69	48	10	12	27	1.74
5843871--5843943	30	2.4	30	84	8	87	39	0	0	60	0.97
5844806--5844845	21	1.9	21	85	10	55	47	0	0	52	1.00
5845150--5845192	19	2.1	21	87	8	63	23	9	9	58	1.58
5867442--5867482	21	2.0	21	90	0	64	29	21	29	19	1.98
5868954--5869271	159	2.0	160	96	2	595	34	9	16	39	1.81
5870001--5870046	23	2.0	23	83	8	58	30	2	10	56	1.46
5883677--5883783	34	3.2	33	81	4	117	42	0	10	46	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5883839--5884226	125	3.1	126	80	6	409	39	16	17	27	1.90
5887623--5888253	314	2.0	314	94	0	1109	25	26	18	29	1.98
5888605--5888644	11	3.6	11	86	6	55	52	0	25	22	1.47
5891437--5891470	17	2.0	17	94	0	59	44	50	0	5	1.26
5894312--5894467	49	3.2	49	95	0	278	42	1	10	44	1.50
5897639--5897682	22	1.9	24	81	9	56	56	6	0	36	1.26
5897701--5897755	28	1.9	28	82	10	67	43	3	5	47	1.44
5898950--5899013	28	2.2	30	86	8	87	59	0	1	39	1.07
5898930--5899003	9	7.9	9	78	13	78	60	1	2	35	1.19
5900156--5900277	38	3.2	38	79	0	145	36	13	16	34	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144