genome.fa.s11.2.7.7.80.10.50.1000.103.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  103  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31674717--31674815	46	2.2	43	82	12	119	32	25	19	23	1.97
31676196--31676250	27	2.0	27	96	0	101	43	7	16	32	1.75
31680591--31680831	50	4.8	50	82	1	270	21	26	22	28	1.99
31681767--31681798	16	2.0	16	100	0	64	37	18	12	31	1.88
31681784--31681809	12	2.2	12	100	0	52	34	23	15	26	1.94
31685777--31686006	50	4.6	50	85	4	250	20	30	24	25	1.98
31685675--31686006	150	2.2	150	78	3	339	20	28	23	26	1.99
31686300--31686402	51	2.0	51	100	0	206	36	21	3	37	1.72
31692723--31692809	25	3.5	24	79	6	93	28	22	19	28	1.98
31694043--31694082	19	2.0	20	95	4	73	47	0	0	52	1.00
31698208--31698529	102	3.2	102	82	2	371	29	25	14	30	1.95
31698207--31698504	51	5.9	51	79	5	257	29	25	14	29	1.95
31704393--31704548	40	3.9	40	90	0	249	21	28	19	30	1.98
31704547--31704947	203	2.0	203	100	0	802	34	23	9	32	1.88
31710440--31710527	44	2.0	44	93	0	149	39	14	22	22	1.91
31713353--31713503	40	3.8	40	90	0	239	22	27	19	30	1.98
31713353--31713502	80	1.9	80	94	0	264	22	27	20	30	1.98
31713504--31713823	161	2.0	161	100	0	640	35	23	9	31	1.87
31718320--31718396	26	3.0	26	84	0	100	3	31	33	31	1.76
31724697--31724723	11	2.5	11	100	0	54	59	0	0	40	0.98
31725998--31726022	11	2.3	11	100	0	50	68	8	16	8	1.38
31726398--31727130	367	2.0	367	96	0	1351	28	14	19	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31727431--31727476	13	3.6	13	94	2	76	39	0	13	47	1.42
31732833--31732892	28	2.1	29	84	9	79	16	8	0	75	1.04
31732844--31732908	29	2.3	28	79	10	69	20	7	0	72	1.09
31735782--31735814	13	2.6	13	90	4	50	39	0	12	48	1.40
31738835--31738868	14	2.4	14	90	0	50	14	35	20	29	1.93
31746075--31746301	48	4.7	48	74	8	165	23	29	19	27	1.98
31746124--31746344	96	2.3	95	81	7	250	25	30	16	27	1.96
31746172--31746344	48	3.6	47	75	9	152	27	30	15	26	1.96
31746174--31746385	96	2.2	95	80	8	225	26	31	16	25	1.97
31746078--31746388	144	2.2	144	77	5	315	24	30	17	27	1.97
31750342--31750381	14	2.9	14	88	0	53	50	7	32	10	1.64
31758344--31758377	12	2.8	12	90	4	50	8	2	5	82	0.93
31758332--31758377	14	3.4	14	80	17	60	8	2	6	82	0.91
31758731--31758778	14	3.4	14	85	0	60	43	6	31	18	1.75
31765664--31765841	27	6.6	27	84	3	205	29	28	15	26	1.96
31765685--31765840	82	1.9	81	88	3	233	29	28	15	26	1.96
31773004--31773181	27	6.6	27	82	3	178	29	28	14	27	1.95
31773025--31773180	82	1.9	81	86	3	224	29	28	14	27	1.95
31776875--31776950	38	2.0	38	100	0	152	31	13	23	31	1.93
31778137--31778281	40	3.6	40	85	4	184	25	25	25	23	2.00
31784190--31784315	65	1.9	65	96	0	234	26	10	24	38	1.88
31785119--31785503	40	9.6	40	90	3	564	24	21	28	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31790052--31790107	27	2.1	27	83	6	69	37	23	16	23	1.93
31790389--31790492	27	3.9	27	74	5	93	43	18	18	20	1.89
31790890--31790964	27	2.8	27	82	8	89	32	12	14	41	1.83
31790944--31791101	27	5.8	27	78	5	149	33	7	18	40	1.79
31790948--31791098	54	2.8	54	83	1	185	33	7	17	41	1.77
31797123--31797227	27	3.9	27	70	5	86	35	24	8	31	1.86
31797211--31797350	27	5.2	27	88	0	190	34	15	21	29	1.94
31797869--31797921	22	2.4	22	87	9	81	22	24	18	33	1.97
31797924--31797971	20	2.4	20	89	0	69	12	18	29	39	1.88
31798015--31798077	27	2.3	27	83	5	74	15	22	23	38	1.93
31798216--31798305	25	3.6	25	90	0	135	22	20	12	45	1.83
31798213--31798334	6	19.8	6	69	14	79	21	18	11	48	1.79
31798288--31798343	18	3.1	18	82	10	69	19	17	10	51	1.74
31801116--31801425	41	7.6	41	81	1	345	39	12	24	22	1.89
31801116--31801425	82	3.8	82	93	1	480	39	12	24	22	1.89
31801514--31801592	28	2.8	27	79	11	79	21	0	27	50	1.49
31801739--31801829	7	13.0	7	79	0	92	20	1	34	43	1.59
31801727--31801814	21	4.2	21	81	5	97	22	0	31	45	1.53
31802231--31802326	41	2.3	41	83	0	129	40	14	22	21	1.90
31802303--31802399	41	2.4	41	82	0	113	40	16	20	22	1.91
31802409--31802492	14	5.9	14	71	14	57	23	2	23	50	1.61
31802422--31802490	22	3.2	22	72	13	63	23	2	23	50	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31802676--31802750	35	2.1	35	85	4	98	22	0	32	45	1.53
31802676--31802777	7	14.6	7	72	0	69	21	1	34	42	1.64
31805090--31805314	49	4.5	49	87	2	297	26	17	27	29	1.97
31810533--31810720	49	3.8	49	88	1	250	25	18	26	29	1.98
31831242--31831266	13	1.9	13	100	0	50	24	36	32	8	1.84
31838263--31838402	9	15.9	9	72	11	76	47	17	0	33	1.53
31838283--31838375	34	2.6	35	83	10	118	49	16	1	33	1.53
31843057--31843088	16	2.1	15	94	5	55	50	28	18	3	1.62
31843207--31843240	18	2.0	17	88	11	52	29	17	35	17	1.93
31843335--31843398	28	2.3	28	91	5	103	32	29	7	29	1.86
31843504--31843593	28	3.2	27	84	7	110	21	24	22	32	1.98
31843514--31843604	27	3.2	28	82	4	94	23	26	18	31	1.97
31843504--31843618	55	2.1	56	82	8	137	20	24	20	34	1.96
31848696--31848730	17	2.0	18	88	5	54	22	28	31	17	1.96
31848901--31849000	27	3.7	28	78	9	91	40	18	10	32	1.83
31848985--31849043	27	2.2	27	87	0	82	35	25	5	33	1.78
31848996--31849180	27	6.9	27	89	0	235	27	22	8	41	1.82
31848969--31849152	81	2.3	81	81	0	188	28	23	9	38	1.85
31849131--31849379	27	9.1	27	78	5	162	39	19	8	32	1.82
31849167--31849297	54	2.4	54	89	2	183	40	20	7	31	1.81
31849023--31849206	81	2.3	81	82	0	206	28	21	9	40	1.84
31849158--31849325	81	2.1	81	83	4	205	39	21	8	30	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31849336--31849387	27	1.9	27	88	7	79	40	11	11	36	1.78
31849441--31849532	27	3.4	27	89	3	123	34	20	25	19	1.96
31850776--31850832	9	5.9	9	73	15	51	35	8	21	35	1.84
31850774--31850844	20	3.5	20	92	0	115	35	9	21	33	1.86
31850891--31851033	25	5.8	25	94	2	238	27	21	23	27	1.99
31850890--31851059	25	7.0	24	88	5	220	28	21	23	26	1.99
31851253--31851316	31	2.1	31	90	0	101	35	15	23	25	1.94
31858588--31858765	27	6.6	27	83	3	196	26	15	28	29	1.96
31858589--31858744	82	1.9	81	88	3	233	26	16	28	28	1.97
31858585--31858765	82	2.2	81	83	2	229	27	16	27	29	1.97
31866685--31866862	27	6.6	27	83	3	205	26	15	28	29	1.96
31866686--31866841	82	1.9	81	88	3	233	26	15	28	29	1.96
31866682--31866862	82	2.2	81	83	2	229	27	15	27	29	1.96
31869433--31869702	137	2.0	137	84	1	353	34	28	18	18	1.95
31876125--31876195	30	2.4	30	85	0	88	32	22	23	21	1.98
31876304--31876400	26	3.7	26	83	4	124	37	23	23	15	1.93
31876581--31876858	27	10.3	28	79	8	231	19	16	18	45	1.85
31876597--31876858	81	3.2	79	80	6	267	19	16	19	45	1.85
31879064--31879133	31	2.3	30	85	4	88	34	14	5	45	1.68
31881835--31882012	27	6.6	27	84	3	205	29	28	15	26	1.96
31881856--31882011	82	1.9	81	88	3	233	29	28	15	26	1.96
31889898--31890075	27	6.6	27	84	3	205	29	28	15	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31889919--31890074	82	1.9	81	88	3	233	29	28	15	26	1.96
31893382--31893489	51	2.1	51	87	5	155	44	6	20	28	1.76
31899458--31899496	17	2.1	20	86	13	57	51	10	0	38	1.36
31906608--31906659	27	1.9	27	88	0	77	30	19	28	21	1.97
31906601--31906668	27	2.5	26	79	9	73	32	19	27	20	1.97
31906804--31906835	2	16.0	2	93	0	55	3	0	46	50	1.17
31915070--31915095	6	4.3	6	100	0	52	0	0	15	84	0.62
31919273--31919311	18	2.2	18	90	0	60	41	0	58	0	0.98
31919271--31919313	6	7.0	6	84	5	50	41	0	58	0	0.98
31919941--31919978	17	2.3	17	86	4	51	26	0	18	55	1.43

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144