genome.fa.s11.2.7.7.80.10.50.1000.33.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  33  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10024019--10024062	19	2.2	19	88	8	61	59	4	0	36	1.18
10024017--10024066	20	2.4	21	83	12	68	60	4	0	36	1.16
10024074--10024112	7	5.7	7	90	6	53	79	0	0	20	0.73
10024072--10024112	13	3.1	13	82	6	55	75	0	0	24	0.80
10024786--10024877	44	2.2	41	90	7	141	51	18	17	13	1.77
10025027--10025054	14	2.0	14	100	0	56	14	7	57	21	1.61
10025701--10025725	12	2.1	12	100	0	50	32	8	0	60	1.26
10025890--10025914	12	2.1	12	100	0	50	24	36	24	16	1.94
10026075--10026114	9	4.4	9	90	0	62	42	20	10	27	1.83
10026122--10026184	17	3.5	17	69	12	54	49	12	3	34	1.57
10026113--10026187	37	2.0	37	94	0	132	45	14	4	36	1.64
10026319--10026427	39	2.8	39	95	1	193	18	2	27	51	1.60
10026644--10026668	7	3.6	7	100	0	50	60	12	0	28	1.32
10029588--10029661	22	3.5	20	77	15	69	55	1	0	43	1.08
10029593--10029654	21	2.9	22	85	7	83	53	1	0	45	1.10
10029584--10029663	21	3.9	21	70	22	62	53	1	0	45	1.08
10029747--10029795	25	2.0	25	92	4	82	53	4	12	30	1.57
10035561--10035592	16	2.0	16	100	0	64	18	12	6	62	1.50
10042103--10042127	6	4.2	6	100	0	50	36	32	0	32	1.58
10043421--10043454	17	2.1	15	89	10	50	44	0	0	55	0.99
10046251--10046280	15	2.0	15	93	0	51	50	0	0	50	1.00
10047629--10047661	17	1.9	17	93	0	57	51	15	24	9	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10048312--10048361	8	6.2	8	78	15	50	82	4	0	14	0.82
10048305--10048361	7	7.4	7	77	16	51	80	3	0	15	0.84
10053968--10054010	21	2.0	21	90	0	68	34	11	25	27	1.91
10069858--10069901	17	2.6	16	76	13	52	29	0	54	15	1.42
10076441--10076470	14	2.2	13	94	5	51	13	20	20	46	1.83
10079160--10079217	27	2.0	30	83	16	77	56	0	5	37	1.21
10082120--10082161	22	1.9	22	85	0	57	50	2	7	40	1.43
10082381--10082413	17	1.9	17	93	0	57	30	15	6	48	1.69
10083613--10083649	9	4.1	9	92	0	65	45	13	10	29	1.77
10084566--10084613	5	9.6	5	100	0	96	20	18	18	41	1.90
10089807--10089981	42	4.1	42	78	7	140	44	18	13	24	1.85
10098288--10098362	31	2.4	30	82	6	87	54	4	8	33	1.48
10098302--10098362	31	2.0	31	87	6	88	54	4	8	32	1.52
10099033--10099309	139	2.0	139	97	0	520	41	18	0	39	1.56
10100838--10100874	12	3.1	12	88	0	56	5	2	40	51	1.39
10103498--10103541	23	1.9	23	90	0	70	43	25	2	29	1.67
10106332--10106541	105	2.0	105	94	1	368	44	15	10	30	1.79
10108656--10109074	207	2.0	207	99	0	820	29	20	8	40	1.82
10110102--10110148	11	4.1	11	78	10	58	65	0	0	34	0.93
10110104--10110152	24	2.1	24	92	3	82	61	0	0	38	0.96
10112264--10112375	23	4.7	23	72	10	84	42	18	22	16	1.88
10116546--10116625	35	2.4	32	78	17	83	48	1	0	50	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10116554--10116597	22	2.0	22	82	8	54	45	0	0	54	0.99
10116585--10116624	19	2.2	18	86	4	53	42	2	0	55	1.13
10129330--10129392	20	3.1	20	69	13	65	23	7	11	57	1.60
10131321--10131349	5	5.8	5	100	0	58	0	17	0	82	0.66
10135564--10135591	14	2.0	14	100	0	56	57	28	0	14	1.38
10138623--10138663	20	2.0	20	85	0	55	39	7	14	39	1.74
10141667--10141716	15	3.4	15	81	13	52	50	0	8	42	1.32
10149973--10150029	22	2.6	22	85	0	87	57	3	12	26	1.50
10160656--10160704	25	2.0	24	88	4	71	51	0	2	46	1.12
10170658--10170711	18	3.1	17	73	10	56	42	5	0	51	1.25
10173710--10173746	18	2.0	18	89	5	56	51	5	0	43	1.24
10173782--10173806	13	1.9	13	100	0	50	64	0	4	32	1.12
10176326--10176365	14	2.9	14	84	0	53	32	7	17	42	1.77
10176334--10176400	35	1.9	35	87	3	100	31	10	13	44	1.77
10176349--10176388	20	2.0	20	85	0	53	27	12	12	47	1.77
10177200--10177456	113	2.3	112	88	2	383	24	21	24	29	1.99
10177771--10177853	35	2.3	35	79	2	94	26	2	26	44	1.66
10177771--10177817	14	3.4	14	81	0	58	23	2	27	46	1.63
10186740--10186833	21	4.3	21	82	6	107	39	18	39	3	1.66
10186772--10186832	12	5.3	12	76	11	65	37	16	40	4	1.70
10187338--10187688	42	8.3	42	90	2	506	23	20	21	34	1.97
10187338--10187688	127	2.7	127	88	3	517	23	20	21	34	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10188480--10188549	27	2.6	27	80	8	79	50	21	2	25	1.63
10191257--10191284	14	2.0	14	100	0	56	35	7	7	50	1.57
10200402--10200514	57	2.0	57	92	0	190	37	12	15	34	1.86
10201788--10201820	16	2.1	16	94	0	57	33	0	36	30	1.58
10201799--10201893	45	2.1	44	88	1	136	34	5	27	32	1.79
10202055--10202089	18	2.0	17	88	5	52	54	0	0	45	0.99
10202013--10202085	27	2.7	27	76	8	76	52	2	0	45	1.15
10201974--10202245	144	1.9	147	94	3	487	46	3	2	47	1.34
10202199--10202233	18	2.0	17	88	5	52	54	0	0	45	0.99
10202219--10202397	55	3.1	54	64	22	128	49	7	2	41	1.43
10202319--10202353	18	2.0	17	88	5	52	60	0	0	40	0.97
10202429--10202460	16	1.9	17	93	6	57	46	0	0	53	1.00
10202182--10202474	120	2.4	120	92	2	482	50	5	2	42	1.36
10202505--10202699	93	2.1	92	89	2	293	47	4	4	44	1.41
10204100--10204126	11	2.5	11	100	0	54	51	18	7	22	1.70
10206309--10206339	15	2.1	15	100	0	62	45	0	19	35	1.51
10210263--10210337	38	1.9	38	82	12	91	53	0	2	44	1.14
10213550--10213587	2	19.5	2	89	5	60	52	0	0	47	1.00
10213552--10213593	10	4.4	10	85	8	52	54	0	0	45	0.99
10213547--10213593	14	3.5	13	80	13	60	57	0	0	42	0.98
10215347--10215393	23	2.1	21	88	7	67	78	14	0	6	0.93
10216489--10216694	23	8.9	23	76	14	145	39	18	13	28	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10216458--10216694	46	5.1	47	83	3	291	38	18	14	29	1.90
10216459--10216694	93	2.5	93	95	2	411	38	18	14	28	1.90
10217385--10217510	28	4.5	28	89	2	182	30	25	12	31	1.93
10219190--10219263	24	2.9	26	73	15	73	31	8	2	58	1.41
10230973--10231026	24	2.2	25	80	9	67	38	5	0	55	1.23
10236170--10236230	13	4.7	13	77	0	59	27	6	26	39	1.81
10236170--10236233	26	2.5	26	81	0	83	31	6	25	37	1.81
10236463--10236520	24	2.5	23	77	8	64	50	1	3	44	1.29
10240688--10241478	2	395.5	2	100	0	1582	50	0	49	0	1.00
10243848--10244074	19	11.8	19	84	1	301	39	9	15	35	1.80
10243855--10244074	38	5.7	38	96	1	386	40	9	15	35	1.79
10244988--10245184	98	2.0	98	90	0	313	27	9	24	38	1.87
10249266--10249314	12	3.8	12	82	12	53	79	0	20	0	0.73
10249278--10249322	6	7.2	6	82	9	54	75	0	22	2	0.91
10249265--10249321	20	2.8	20	84	5	71	78	0	19	1	0.83
10249271--10249321	7	7.6	7	80	14	54	76	0	21	1	0.88
10250541--10250899	44	8.2	44	69	11	168	30	20	24	25	1.99
10250679--10251189	132	3.9	131	86	6	525	30	19	24	25	1.98
10250583--10250934	176	2.0	176	96	0	650	30	19	24	25	1.98
10251204--10251839	44	14.7	44	70	15	316	29	20	22	27	1.98
10251327--10251661	172	1.9	174	80	9	391	29	20	22	27	1.98
10251182--10251844	217	3.1	217	91	0	1042	30	19	22	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10251997--10252098	51	2.0	51	96	0	186	31	17	19	31	1.95
10252098--10252172	19	3.8	19	85	13	98	40	12	16	32	1.84
10252099--10252161	21	3.1	21	86	8	78	41	11	14	33	1.81
10254524--10254553	13	2.3	13	100	0	60	20	6	13	60	1.55
10255376--10255417	15	2.7	16	82	14	52	45	0	2	52	1.13
10255367--10255408	15	2.9	15	82	10	52	47	0	0	52	1.00
10255636--10255671	16	2.2	16	95	0	63	38	33	0	27	1.57
10259106--10259185	33	2.5	32	85	4	106	20	26	38	15	1.91
10261114--10261149	17	2.1	17	100	0	72	38	16	33	11	1.84
10270347--10270408	16	3.9	16	89	4	90	38	0	32	29	1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144