genome.fa.s11.2.7.7.80.10.50.1000.99.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  99  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30368561--30369247	44	15.6	44	68	12	273	31	16	24	27	1.96
30368754--30369031	90	3.1	90	67	20	256	32	19	22	26	1.97
30368705--30369091	177	2.2	177	92	0	641	31	18	22	27	1.97
30370788--30370929	71	2.0	72	80	9	164	38	4	0	56	1.26
30370881--30370939	31	1.9	30	82	3	73	35	8	0	55	1.30
30371097--30371129	17	1.9	17	93	0	57	36	6	0	57	1.23
30371069--30371205	16	9.3	13	71	24	55	32	6	0	60	1.22
30371162--30371204	17	2.6	17	88	3	61	37	2	0	60	1.10
30371163--30371206	19	2.4	18	85	7	61	38	2	0	59	1.10
30372888--30372983	35	2.6	36	73	20	92	39	17	23	18	1.92
30372990--30373378	108	3.6	107	81	3	370	38	13	20	28	1.90
30372993--30373367	71	5.2	73	75	10	240	39	13	20	27	1.89
30372990--30373322	143	2.3	144	79	6	352	39	13	19	27	1.89
30372912--30373367	35	12.6	35	73	7	270	39	13	20	26	1.90
30373565--30373711	75	2.0	75	89	2	224	41	19	13	25	1.88
30376756--30376809	27	2.0	27	92	0	90	25	22	22	29	1.99
30380128--30380188	29	2.1	29	96	0	113	22	9	18	49	1.77
30382756--30382843	30	3.0	29	85	5	122	45	13	11	29	1.79
30386162--30386268	7	15.0	7	72	11	56	40	39	0	20	1.53
30386539--30386756	41	5.3	41	89	1	305	21	22	23	32	1.98
30394890--30394954	25	2.4	26	80	12	69	66	0	16	16	1.26
30394940--30394970	6	5.2	6	92	0	53	80	0	3	16	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30395486--30395551	33	2.0	33	96	0	123	15	22	27	34	1.94
30407568--30407712	40	3.6	40	88	7	215	27	28	22	22	1.99
30414623--30414649	10	2.7	10	100	0	54	59	18	0	22	1.38
30417864--30417951	44	2.0	44	95	0	158	51	13	9	26	1.71
30427632--30427719	46	1.9	46	83	0	113	37	18	15	28	1.92
30428957--30429000	22	2.0	21	83	12	54	34	6	6	52	1.55
30431497--30431574	38	2.1	38	80	7	88	48	2	7	41	1.45
30436331--30436368	14	2.7	14	95	0	67	44	7	13	34	1.72
30436352--30436396	19	2.3	19	88	3	63	26	13	13	46	1.80
30438511--30438555	18	2.5	18	85	0	54	60	8	4	26	1.46
30439418--30439535	29	4.1	29	86	2	148	27	33	12	26	1.92
30439418--30439535	57	2.1	57	83	1	146	27	33	12	26	1.92
30439758--30439796	16	2.4	16	95	0	69	10	23	17	48	1.78
30446741--30446776	19	2.0	17	89	10	54	63	2	33	0	1.08
30454610--30454717	38	2.8	38	77	13	123	23	23	25	28	1.99
30454710--30454877	43	3.9	43	88	0	237	15	23	31	29	1.95
30461097--30461151	22	2.5	22	79	8	58	74	3	9	12	1.18
30461140--30461195	17	3.2	17	90	7	78	71	0	1	26	0.96
30461228--30461275	21	2.3	20	86	6	69	70	2	0	27	0.98
30462234--30462283	21	2.3	21	83	16	59	24	0	46	30	1.53
30462248--30462294	22	2.1	23	88	4	69	23	2	48	25	1.62
30462243--30462311	29	2.4	29	80	4	77	23	1	47	27	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30462478--30462527	21	2.3	21	83	16	59	24	0	46	30	1.53
30462078--30462565	244	2.0	244	100	0	976	28	2	30	38	1.68
30462492--30462538	22	2.1	23	88	4	69	23	2	48	25	1.62
30462487--30462555	29	2.4	29	80	4	77	23	1	47	27	1.60
30462617--30462692	35	2.1	36	85	7	102	21	0	39	39	1.53
30462619--30462734	42	2.8	42	79	9	121	22	0	39	37	1.54
30462615--30462734	7	17.0	7	69	14	59	21	0	40	37	1.54
30469301--30469390	43	2.1	43	87	0	126	26	14	28	30	1.95
30469867--30469911	18	2.4	19	81	3	56	62	0	6	31	1.21
30477194--30477261	32	2.1	34	94	5	122	54	13	10	22	1.68
30479642--30479675	17	1.9	18	94	5	61	23	0	26	50	1.50
30479640--30479686	17	2.6	17	83	10	58	29	0	21	48	1.50
30479969--30480023	20	2.8	19	77	2	56	69	0	1	29	0.99
30479968--30480034	30	2.2	30	84	10	84	65	0	1	32	1.02
30480225--30480266	18	2.3	19	91	4	68	21	7	2	69	1.25
30480309--30480404	9	10.7	9	73	12	72	28	2	2	67	1.13
30480263--30480414	28	5.6	27	71	18	93	31	3	1	63	1.18
30480243--30480391	56	2.6	57	76	14	139	30	4	2	63	1.24
30480225--30480404	19	9.8	18	73	16	88	28	4	1	65	1.21
30480338--30480405	17	3.9	17	81	11	75	25	1	1	72	1.02
30480356--30480413	26	2.1	27	84	12	75	31	0	0	68	0.89
30480273--30480444	81	2.1	85	80	12	189	30	4	2	62	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30480558--30480832	92	3.0	90	79	8	295	38	8	16	36	1.80
30481445--30481680	43	5.5	43	79	4	237	28	30	16	24	1.97
30481445--30481681	85	2.8	86	83	2	255	28	29	16	24	1.97
30481445--30481680	128	1.8	128	85	1	330	28	30	16	24	1.97
30482641--30482671	15	2.0	16	93	6	55	38	6	3	51	1.44
30485230--30485299	27	2.7	25	84	6	79	24	21	41	12	1.88
30485755--30485798	16	2.8	16	96	0	79	47	4	9	38	1.56
30486003--30486035	14	2.3	15	89	5	50	36	45	3	15	1.61
30486079--30486123	14	3.2	14	78	12	56	51	24	0	24	1.49
30486272--30486309	15	2.5	15	87	8	51	26	47	5	21	1.71
30486277--30486342	22	3.1	21	72	20	57	34	42	1	21	1.62
30486323--30486370	25	1.9	25	83	8	62	37	43	0	18	1.51
30486351--30486385	15	2.4	15	90	4	54	45	34	0	20	1.51
30486346--30486390	22	2.0	22	82	0	54	44	33	0	22	1.53
30486746--30487015	40	6.7	38	70	20	133	28	19	22	29	1.98
30490831--30490874	20	2.2	20	84	8	54	38	11	9	40	1.73
30491863--30491898	17	2.1	17	89	0	54	30	0	0	69	0.89
30493304--30493344	19	2.2	18	91	4	64	56	9	7	26	1.58
30497040--30497067	14	2.0	14	100	0	56	42	0	21	35	1.53
30501019--30501058	19	2.2	18	86	4	53	15	5	17	62	1.49
30505619--30505887	44	5.8	44	67	10	135	27	20	24	27	1.99
30505465--30505932	143	3.3	142	86	2	595	29	20	22	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30506311--30506340	15	2.0	15	93	0	51	76	6	0	16	0.99
30507864--30507945	39	2.1	39	100	0	164	28	7	2	62	1.35
30510145--30510182	17	2.2	17	90	0	58	44	0	15	39	1.47
30515156--30515196	18	2.3	18	87	4	57	36	17	12	34	1.87
30520067--30520091	13	1.9	13	100	0	50	32	4	0	64	1.12
30523530--30523582	27	2.0	25	82	7	61	56	9	13	20	1.64
30525895--30526024	53	2.5	52	87	4	167	36	15	13	34	1.86
30525910--30526024	53	2.2	53	90	1	187	38	17	11	33	1.85
30526121--30526369	43	5.8	43	84	0	336	31	30	16	21	1.95
30526119--30526369	86	2.9	86	88	0	376	31	30	16	21	1.95
30526122--30526369	129	1.9	129	89	1	381	31	30	16	21	1.95
30526557--30526653	35	2.8	35	96	0	185	41	10	8	40	1.69
30526627--30526684	18	2.9	19	71	24	57	37	12	6	43	1.69
30531196--30531240	7	6.4	7	80	10	56	33	42	0	24	1.55
30531196--30531240	14	3.2	14	84	12	65	33	42	0	24	1.55
30531196--30531267	21	3.5	21	71	16	60	34	45	0	19	1.51
30531850--30532077	41	5.5	40	86	5	276	29	23	21	25	1.99
30531850--30532077	82	2.8	82	86	2	305	29	23	21	25	1.99
30532174--30532252	40	2.0	40	89	0	122	22	20	22	34	1.97
30532306--30532416	50	2.2	50	86	0	150	39	16	12	31	1.86
30532402--30532449	23	2.0	24	84	4	62	25	29	12	33	1.92
30532430--30532476	19	2.4	20	89	7	78	27	27	17	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30535271--30535341	24	3.0	24	84	8	85	9	21	0	69	1.17
30535286--30535329	17	2.4	18	85	7	54	9	18	0	72	1.10
30535274--30535336	17	3.6	18	71	25	53	7	20	0	71	1.11
30538263--30538404	51	2.8	51	83	0	131	37	16	14	31	1.89
30538283--30538438	51	3.1	51	83	7	165	34	15	16	33	1.90
30538417--30538520	19	5.2	19	82	6	109	27	25	12	34	1.92
30559127--30559470	123	2.8	123	88	4	521	29	16	20	32	1.95
30562418--30562777	116	3.1	116	95	1	625	43	7	9	39	1.65
30562782--30563020	23	10.5	23	80	10	251	26	0	23	48	1.56
30562788--30563018	90	2.6	90	83	5	295	26	0	23	49	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144