genome.fa.s11.2.7.7.80.10.50.1000.130.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  130  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40464516--40464569	17	3.1	18	78	10	58	20	14	5	59	1.55
40472705--40472756	22	2.2	25	80	10	65	38	17	25	19	1.93
40473617--40473673	26	2.2	26	84	9	71	0	29	3	66	1.08
40473716--40473747	5	6.8	5	86	13	50	56	0	0	43	0.99
40473716--40473747	9	3.4	9	95	4	55	56	0	0	43	0.99
40474535--40474576	21	2.0	21	95	0	75	59	4	0	35	1.19
40474625--40474673	9	5.4	9	90	0	71	28	10	24	36	1.88
40475102--40475235	62	2.2	59	85	7	182	42	3	4	49	1.41
40486155--40486201	10	4.6	10	75	15	51	59	2	2	36	1.21
40486170--40486220	23	2.3	23	86	6	70	54	5	0	39	1.24
40490200--40490244	19	2.4	18	82	10	56	22	0	6	71	1.09
40494048--40494229	61	3.0	61	100	0	364	32	24	16	26	1.96
40500877--40500913	18	2.1	17	90	5	56	51	16	2	29	1.58
40503280--40503443	44	3.8	42	73	10	145	24	16	28	31	1.96
40506770--40506817	13	3.6	14	77	11	55	52	14	16	16	1.76
40511612--40511651	16	2.5	17	76	15	50	55	5	0	40	1.22
40511869--40512059	57	3.4	57	82	5	244	24	16	15	43	1.87
40513072--40513421	174	2.0	175	97	0	657	27	10	20	41	1.85
40520431--40520572	57	2.5	57	88	4	216	45	14	20	19	1.86
40520533--40520614	42	2.0	42	97	0	155	45	15	20	18	1.86
40520476--40520656	99	1.8	99	96	0	335	43	17	19	19	1.89
40521054--40521145	37	2.4	36	79	15	98	54	4	2	39	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40521574--40521613	20	2.0	20	90	4	64	30	5	5	60	1.40
40522747--40522780	16	2.1	16	88	0	50	70	8	2	17	1.25
40539054--40539107	26	2.0	27	85	7	74	44	11	0	44	1.39
40539316--40539371	29	1.9	29	82	13	71	41	10	0	48	1.38
40540757--40540813	29	1.9	30	86	10	82	35	5	1	57	1.31
40548473--40548516	20	2.2	20	87	4	61	22	15	6	54	1.65
40552706--40552730	7	3.6	7	100	0	50	52	0	0	48	1.00
40552952--40552999	25	1.9	25	95	0	87	64	8	0	27	1.22
40553235--40553267	16	2.1	16	94	0	57	69	3	0	27	1.03
40553412--40553444	17	1.9	17	88	11	50	30	3	0	66	1.06
40554043--40554084	22	1.9	22	90	0	66	42	0	2	54	1.13
40554053--40554106	22	2.4	21	81	12	54	42	0	1	55	1.10
40554070--40554127	24	2.4	25	80	11	66	43	0	0	56	0.99
40555532--40555603	30	2.4	30	88	9	103	38	2	0	58	1.13
40564412--40564510	9	10.8	9	77	17	71	57	2	1	39	1.17
40564420--40564510	29	3.2	29	77	13	84	57	2	1	39	1.18
40564415--40564510	10	10.4	9	73	15	63	57	2	1	39	1.17
40565106--40565166	11	5.5	11	80	7	70	24	3	4	67	1.26
40565188--40565256	20	3.6	19	80	5	77	34	1	10	53	1.44
40566298--40566338	20	2.0	22	85	9	59	36	0	2	60	1.10
40567317--40567341	2	12.5	2	100	0	50	0	52	0	48	1.00
40567630--40567654	6	4.2	6	100	0	50	32	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40569798--40569829	17	1.9	16	93	6	55	6	15	0	78	0.95
40572828--40572867	12	3.3	12	78	0	53	70	27	2	0	1.01
40575822--40575861	18	2.2	18	90	0	62	50	5	10	35	1.58
40575932--40575992	20	3.0	20	81	11	63	55	8	1	34	1.39
40576001--40576050	11	4.5	11	78	14	50	60	0	2	38	1.09
40585083--40585115	9	3.7	9	95	0	57	81	0	6	12	0.85
40585677--40585717	3	13.7	3	80	19	50	65	0	0	34	0.93
40585678--40585716	8	5.1	8	93	6	64	64	0	0	35	0.94
40590278--40590314	17	2.1	19	85	10	51	40	5	24	29	1.77
40596877--40596927	21	2.4	22	74	6	52	15	9	1	72	1.19
40598890--40598922	17	1.9	17	93	0	57	21	15	18	45	1.85
40600290--40600485	98	2.0	98	98	0	383	33	8	19	39	1.81
40600801--40601071	137	2.0	137	98	0	524	33	6	20	40	1.77
40602772--40602807	11	3.3	11	92	0	54	30	41	5	22	1.76
40604478--40604545	20	3.4	19	72	8	64	38	17	29	14	1.90
40604473--40604557	40	2.1	40	91	4	136	35	16	30	17	1.92
40605730--40605769	19	2.1	19	100	0	80	45	15	5	35	1.68
40612986--40613037	25	2.0	28	88	11	83	51	3	11	32	1.56
40614923--40615039	41	2.8	40	85	5	162	25	22	28	23	1.99
40619975--40620163	97	2.0	96	88	0	270	37	13	25	22	1.92
40621000--40621051	25	2.0	28	88	11	83	51	3	11	32	1.56
40622811--40622996	41	4.5	41	98	0	354	25	22	28	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40642304--40642336	6	5.5	6	100	0	66	15	0	0	84	0.61
40642304--40642342	18	2.2	18	90	0	60	15	0	5	79	0.90
40644839--40644886	3	16.0	3	100	0	96	33	0	0	66	0.92
40660872--40660954	29	2.7	30	79	5	87	45	13	8	32	1.73
40661577--40661640	34	1.9	33	83	3	83	62	7	4	25	1.42
40661769--40661824	21	2.7	21	74	0	67	28	7	33	30	1.84
40665243--40665272	13	2.3	13	100	0	60	20	0	26	53	1.46
40670211--40670308	45	2.3	41	81	11	108	25	18	26	29	1.98
40672066--40672136	35	2.0	35	100	0	142	36	14	19	29	1.91
40672540--40672667	64	2.0	64	93	0	220	22	13	25	38	1.91
40672719--40672806	40	2.2	41	85	2	115	42	18	7	31	1.79
40678330--40678390	10	6.3	9	73	19	52	37	3	0	59	1.14
40678329--40678389	29	2.1	28	87	3	86	39	3	0	57	1.15
40678320--40678430	39	2.9	37	76	10	98	32	4	0	62	1.22
40678317--40678390	19	3.8	20	72	15	66	37	4	0	58	1.17
40678366--40678421	29	2.0	28	82	10	69	30	3	1	64	1.21
40678376--40678466	39	2.5	35	75	19	87	28	3	4	63	1.29
40678378--40678457	39	2.1	39	81	13	94	26	3	5	65	1.30
40680805--40680838	17	2.0	17	88	0	50	35	5	17	41	1.74
40682919--40682956	17	2.2	17	90	0	58	63	0	5	31	1.17
40685439--40685469	16	1.9	16	100	0	62	64	0	0	35	0.94
40686032--40686090	28	2.1	28	87	6	84	45	3	10	40	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40688455--40688652	41	4.8	40	79	3	216	16	25	24	34	1.95
40688477--40688652	82	2.1	82	90	0	271	16	26	25	32	1.96
40700459--40700527	21	3.3	20	81	4	75	37	14	43	4	1.65
40700492--40700539	12	4.2	12	76	15	57	41	14	39	4	1.65
40700962--40701053	42	2.2	42	84	2	112	25	20	25	29	1.99
40700975--40701269	85	3.5	84	86	4	371	24	22	20	31	1.98
40700975--40701288	42	7.4	42	84	6	357	25	22	21	30	1.98
40700976--40701268	127	2.3	127	84	8	380	24	22	20	31	1.98
40706273--40706570	149	2.0	149	94	0	524	42	14	21	21	1.88
40710327--40710764	220	2.0	221	99	0	860	34	18	14	33	1.90
40721315--40721407	18	5.2	18	90	0	150	31	16	24	27	1.96
40721315--40721407	36	2.6	36	94	0	168	31	16	24	27	1.96
40723788--40723824	17	2.1	18	85	14	51	45	8	2	43	1.47
40725073--40725147	31	2.4	31	77	4	80	28	25	9	37	1.87
40727754--40727846	46	2.0	46	100	0	186	23	10	25	39	1.87
40728843--40728885	22	2.0	22	90	0	68	18	13	16	51	1.77
40737448--40737755	4	77.0	4	100	0	616	25	0	25	50	1.50
40740501--40740535	7	5.3	7	86	13	56	17	14	0	68	1.21
40740501--40740533	13	2.5	13	90	0	57	15	12	0	72	1.12
40741393--40741425	16	2.2	15	89	10	50	0	24	0	75	0.80
40741422--40741508	6	14.7	6	83	4	70	11	8	9	71	1.32
40746305--40746341	3	12.0	3	88	5	56	62	0	2	35	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40746296--40746343	22	2.2	22	81	7	62	64	2	2	31	1.16
40747125--40747162	16	2.5	15	84	16	51	84	0	10	5	0.77
40748147--40748287	50	2.8	50	78	1	149	25	19	21	33	1.97
40748414--40748739	44	7.5	44	70	12	134	29	23	18	28	1.98
40748323--40748913	217	2.7	218	91	0	959	28	25	19	27	1.99
40748899--40749257	129	2.8	129	90	0	558	25	22	20	31	1.98
40750524--40750558	7	5.3	7	86	13	56	17	14	0	68	1.21
40750524--40750556	13	2.5	13	90	0	57	15	12	0	72	1.12
40751416--40751448	16	2.2	15	89	10	50	0	24	0	75	0.80
40751445--40751531	6	14.7	6	83	4	70	11	8	9	71	1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144