genome.fa.s11.2.7.7.80.10.50.1000.143.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  143  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44275295--44275599	145	2.1	144	93	1	513	35	14	19	30	1.92
44275369--44275590	72	3.1	70	64	17	157	35	13	20	31	1.90
44279864--44279953	25	3.5	25	70	10	74	61	1	3	34	1.20
44279986--44280014	7	4.1	7	100	0	58	72	0	0	27	0.85
44281608--44281673	34	2.0	34	85	8	91	53	0	1	45	1.09
44282101--44282446	88	4.0	88	90	2	500	26	21	4	47	1.70
44282101--44282446	174	2.0	175	88	3	518	26	21	4	47	1.70
44282517--44282588	16	4.5	17	77	10	71	45	5	19	29	1.73
44282517--44282583	32	2.1	32	88	5	100	46	5	19	28	1.73
44282971--44283005	13	2.8	12	83	8	52	57	0	11	31	1.34
44291780--44291809	10	3.0	10	95	0	51	33	36	10	20	1.86
44298142--44298175	18	1.9	18	94	5	61	38	2	0	58	1.13
44301347--44301394	15	3.2	15	73	8	53	72	0	2	25	0.95
44306782--44306820	16	2.4	17	91	4	62	58	0	0	41	0.98
44306815--44306880	18	3.5	19	80	8	73	59	0	0	40	0.98
44308085--44308152	18	3.7	18	80	7	66	39	0	0	60	0.97
44308105--44308155	10	5.3	10	75	17	54	45	0	0	54	0.99
44308148--44308186	16	2.3	17	86	13	62	41	0	0	58	0.98
44308147--44308196	19	2.5	19	81	15	57	46	0	0	54	1.00
44308389--44308704	165	1.9	160	84	7	413	30	14	19	35	1.92
44310805--44310853	22	2.3	21	86	6	64	2	18	4	75	1.06
44320745--44320785	21	2.0	21	81	18	50	21	26	19	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44334112--44334151	3	13.3	3	94	0	71	30	0	37	32	1.58
44336901--44336953	23	2.4	22	76	20	56	9	18	1	69	1.25
44343141--44343575	176	2.5	176	83	7	528	30	19	22	27	1.98
44343160--44343576	88	4.7	88	81	4	457	30	18	23	27	1.98
44343766--44343977	50	4.2	50	75	4	187	33	20	19	25	1.97
44343769--44343967	100	2.0	100	86	0	281	33	20	19	27	1.96
44343984--44344105	44	2.8	44	79	2	129	31	17	21	30	1.96
44345620--44345714	12	8.0	12	69	24	51	28	5	1	65	1.21
44346359--44346499	70	2.0	70	97	0	264	34	13	13	39	1.84
44346701--44346845	73	2.0	73	94	0	254	28	24	17	29	1.97
44351662--44351823	81	2.0	81	98	0	315	43	10	17	28	1.82
44367226--44367276	23	2.2	23	89	0	84	0	41	3	54	1.19
44367420--44367488	35	2.0	35	100	0	138	20	11	50	17	1.76
44368017--44368757	43	17.1	43	67	5	256	26	24	19	29	1.99
44367933--44368919	129	7.6	130	90	1	1487	27	24	19	28	1.99
44367955--44368919	390	2.5	389	90	1	1572	27	24	20	28	1.99
44368842--44369229	45	8.4	45	64	15	130	29	22	19	28	1.98
44367933--44368934	520	1.9	520	94	0	1783	27	24	19	28	1.99
44368839--44369032	95	2.0	95	93	0	334	28	21	19	30	1.97
44369068--44369260	97	2.0	95	95	2	350	29	22	19	29	1.98
44368829--44369266	231	1.9	229	94	0	768	28	22	19	28	1.98
44369220--44369519	44	6.9	44	67	6	126	27	23	20	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44369165--44369661	130	3.7	134	82	6	586	28	23	19	28	1.98
44369561--44369853	97	3.0	97	96	1	527	29	22	17	30	1.97
44369875--44370016	44	3.3	44	68	15	123	28	22	23	25	2.00
44369844--44370020	86	2.0	87	90	1	275	26	22	22	28	1.99
44377784--44377928	72	2.0	72	98	0	281	36	24	9	29	1.87
44378800--44378825	13	2.0	13	100	0	52	38	30	0	30	1.58
44379718--44379751	7	4.9	7	100	0	68	44	26	0	29	1.55
44383420--44383462	20	2.2	19	87	4	59	48	6	2	41	1.43
44385489--44385733	133	1.8	133	84	1	339	29	22	19	28	1.98
44385961--44386247	132	2.2	133	89	1	443	28	23	18	29	1.98
44385961--44386259	133	2.3	132	88	1	429	27	23	18	29	1.98
44386267--44386406	50	2.8	49	68	6	111	24	25	21	29	1.99
44386257--44386525	100	2.7	100	85	6	339	26	23	21	28	1.99
44386375--44386525	50	3.0	50	69	7	135	27	23	19	29	1.99
44387762--44387803	7	6.0	7	79	20	52	14	16	0	69	1.20
44398763--44398817	28	2.0	28	85	7	76	80	7	12	0	0.91
44400303--44400353	27	1.9	27	88	11	79	21	9	11	56	1.63
44415319--44415468	30	5.1	30	95	1	259	32	10	17	40	1.82
44417459--44417663	27	7.6	27	86	3	216	28	14	27	29	1.95
44417460--44417663	109	1.9	108	85	5	286	27	14	27	29	1.95
44425748--44425870	30	4.1	30	86	0	156	32	8	15	43	1.76
44425748--44425870	60	2.0	60	87	0	174	32	8	15	43	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44427515--44427561	12	3.9	12	77	0	58	2	38	27	31	1.69
44428495--44428570	31	2.4	32	77	4	82	42	11	21	25	1.86
44457916--44457954	19	2.0	21	85	10	55	64	5	0	30	1.15
44463169--44463217	18	2.7	18	84	6	55	18	4	2	75	1.06
44463184--44463221	19	2.1	18	95	5	67	15	7	0	76	1.01
44463841--44463865	5	5.0	5	100	0	50	80	0	0	20	0.72
44464013--44464205	105	1.8	105	83	4	255	30	13	25	30	1.94
44469554--44469625	26	2.8	26	74	4	74	41	22	20	15	1.89
44476485--44476604	63	1.9	62	86	5	170	28	25	20	25	1.99
44477562--44477591	11	2.7	11	94	0	51	60	0	0	40	0.97
44493671--44493793	46	2.7	46	80	1	140	17	18	16	47	1.83
44493771--44493928	45	3.5	45	80	0	163	24	19	17	38	1.93
44493906--44494023	45	2.6	45	87	0	164	20	13	16	49	1.80
44498382--44498411	16	1.9	15	93	6	51	3	13	0	83	0.77
44500094--44500124	3	10.3	3	92	0	53	67	3	0	29	1.06
44506566--44506917	125	2.8	125	97	0	661	29	15	21	32	1.95
44510028--44510052	10	2.5	10	100	0	50	48	0	8	44	1.32
44510036--44510877	55	15.3	55	97	0	1571	43	5	13	38	1.66
44510872--44512307	29	50.6	29	80	8	1340	28	1	24	45	1.61
44512312--44512464	71	2.2	71	93	0	261	45	15	3	35	1.64
44512518--44512552	6	5.8	6	100	0	70	17	0	48	34	1.47
44512536--44512630	29	3.5	28	80	15	126	29	0	29	41	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44512571--44512627	22	2.5	22	85	8	78	31	0	24	43	1.54
44518076--44518439	179	2.0	179	99	0	719	39	12	13	35	1.82
44527904--44527945	20	2.2	20	86	4	59	11	28	0	59	1.33
44534764--44534788	13	1.9	13	100	0	50	32	4	24	40	1.73
44537522--44537562	19	2.2	19	86	0	55	63	0	24	12	1.28
44540231--44540282	21	2.4	22	87	3	70	13	11	19	55	1.68
44540228--44540282	22	2.6	21	85	5	76	16	10	18	54	1.70
44545433--44545502	3	23.7	3	78	5	54	57	1	4	37	1.27
44545433--44545492	21	2.8	21	82	7	68	53	1	5	40	1.33
44554278--44554365	25	3.5	24	71	17	72	35	21	20	22	1.96
44554378--44554425	25	2.0	24	91	4	78	35	18	29	16	1.93
44555157--44555267	22	4.6	24	71	19	81	33	28	0	37	1.58
44555162--44555212	22	2.3	22	96	0	93	25	29	0	45	1.54
44555165--44555264	52	1.9	52	89	0	155	30	31	0	39	1.57
44555317--44555360	20	2.3	20	84	7	56	36	0	0	63	0.95
44556449--44556478	7	4.3	7	100	0	60	26	0	13	60	1.34
44557123--44557178	27	2.1	27	100	0	112	19	28	10	41	1.85
44557360--44557415	24	2.3	24	93	0	94	26	37	17	17	1.93
44557701--44558358	29	22.5	29	83	5	727	46	22	0	31	1.53
44557701--44558356	59	11.2	59	84	6	755	46	21	0	31	1.53
44557851--44557977	30	3.9	35	74	20	132	47	22	0	29	1.52
44557701--44558350	87	7.4	87	88	5	848	46	21	0	31	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44558434--44558478	21	2.1	22	91	4	74	37	11	15	35	1.83
44571464--44571510	24	2.0	24	100	0	94	46	4	4	44	1.42
44572190--44572216	11	2.5	11	100	0	54	51	0	7	40	1.30
44580394--44580425	16	2.0	16	100	0	64	25	25	0	50	1.50
44585845--44585895	23	2.2	23	79	6	59	33	13	19	33	1.91
44586053--44586092	20	2.1	19	85	4	53	65	2	0	32	1.06
44593089--44593216	51	2.5	50	78	12	145	50	2	5	41	1.38
44610522--44610560	8	4.8	8	96	3	69	61	0	2	35	1.10
44612140--44612201	24	2.6	24	94	0	106	27	8	38	25	1.84
44616900--44616973	36	2.1	36	92	0	121	33	13	20	32	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144