genome.fa.s11.2.7.7.80.10.50.1000.102.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  102  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31282516--31282559	18	2.4	19	92	3	72	43	0	56	0	0.99
31282516--31282559	6	7.2	6	79	5	52	43	0	56	0	0.99
31282516--31282567	24	2.2	24	82	0	59	44	0	55	0	0.99
31283327--31283502	39	4.5	39	77	4	176	32	3	20	42	1.71
31283332--31283478	78	1.9	78	91	0	240	31	4	21	42	1.71
31283332--31283502	78	2.2	78	86	2	227	32	4	21	42	1.71
31285408--31285488	26	3.0	26	76	5	81	16	16	28	39	1.89
31290608--31290899	50	5.9	50	87	0	363	25	21	30	22	1.99
31290615--31290950	100	3.4	100	82	2	363	26	21	28	23	1.99
31290615--31290888	150	1.8	150	87	0	404	25	22	29	22	1.99
31301417--31301482	34	1.9	34	90	0	105	18	16	27	37	1.92
31323792--31323828	19	2.0	19	94	5	67	21	48	5	24	1.71
31333164--31333606	27	16.4	27	79	4	410	38	18	20	22	1.93
31333164--31333606	81	5.5	80	83	2	467	38	18	20	22	1.93
31333600--31333655	25	2.2	26	83	3	69	25	10	17	46	1.80
31333762--31333817	26	2.2	26	93	0	94	16	23	21	39	1.92
31339047--31339077	7	4.4	7	91	0	53	41	29	3	25	1.71
31345243--31345339	17	5.4	17	67	13	68	30	3	15	50	1.59
31345241--31345349	37	2.9	37	97	0	200	31	4	15	48	1.65
31345259--31345323	20	3.4	19	69	14	62	33	4	16	44	1.69
31348662--31348860	47	4.2	47	95	0	353	33	9	30	27	1.87
31352601--31352641	22	1.9	22	85	5	57	7	36	0	56	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31361087--31361162	37	2.1	37	97	0	143	38	17	19	25	1.93
31363195--31363652	27	17.0	27	81	1	452	40	17	20	22	1.92
31364798--31364840	22	2.0	22	95	0	77	46	6	18	27	1.75
31367042--31367227	40	4.7	40	83	7	218	26	27	22	23	1.99
31376993--31377144	41	3.7	41	84	1	180	19	23	25	31	1.98
31377032--31377063	16	2.0	16	93	0	55	18	28	25	28	1.98
31385390--31385445	27	2.1	27	82	0	67	32	23	23	21	1.98
31385672--31385947	64	4.3	63	79	6	272	36	22	20	21	1.95
31385706--31385947	32	7.6	31	83	2	234	35	23	19	20	1.95
31385672--31385947	96	2.9	96	80	6	276	36	22	20	21	1.95
31385986--31386057	27	2.7	27	78	6	76	37	22	20	19	1.94
31386122--31386203	24	3.5	23	73	14	60	51	20	6	21	1.69
31386240--31386557	27	11.8	27	82	3	318	23	22	20	33	1.98
31386359--31386629	27	10.1	27	74	13	127	21	19	21	37	1.95
31386268--31386625	54	6.6	53	81	5	217	22	21	20	34	1.96
31393231--31393269	14	2.6	16	88	8	55	25	0	35	38	1.56
31399059--31399300	50	4.7	50	78	5	202	27	21	27	23	1.99
31407279--31407520	50	4.7	52	77	10	173	28	19	27	24	1.99
31411400--31411437	20	1.9	20	88	0	58	31	5	5	57	1.43
31420236--31420791	44	12.8	43	68	13	187	29	18	24	26	1.98
31420230--31420786	217	2.6	216	91	0	889	29	19	24	27	1.98
31439320--31439381	20	3.1	19	83	6	70	22	27	3	46	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31440098--31440122	6	4.2	6	100	0	50	0	32	0	68	0.90
31441706--31441747	22	2.0	22	85	4	59	9	16	0	73	1.08
31444286--31445397	374	3.0	373	90	1	1676	33	8	23	33	1.86
31445877--31445913	15	2.3	17	90	9	60	5	27	0	67	1.12
31451838--31451906	24	2.8	25	77	18	83	53	10	2	33	1.49
31451941--31452039	24	4.5	23	66	25	70	54	3	11	31	1.51
31451931--31452056	64	2.0	63	98	1	243	53	3	11	30	1.53
31452372--31452420	25	2.0	25	83	0	62	69	0	8	22	1.14
31452826--31452850	13	1.9	13	100	0	50	80	0	20	0	0.72
31453711--31454012	44	7.0	43	72	8	202	24	20	22	32	1.98
31453647--31454007	129	2.8	129	88	1	519	25	20	22	32	1.98
31453835--31453993	85	1.9	85	82	5	205	26	20	22	30	1.98
31454003--31455310	88	14.9	88	92	0	1898	27	25	19	28	1.98
31455378--31455802	44	9.7	44	86	0	492	27	22	16	33	1.96
31459387--31459455	24	2.8	25	78	6	88	50	8	7	33	1.61
31459876--31459915	18	2.2	18	95	0	71	70	0	7	22	1.12
31459876--31459922	18	2.7	18	90	3	60	72	0	8	19	1.10
31460328--31460352	13	1.9	13	100	0	50	80	0	20	0	0.72
31471783--31471855	36	2.0	36	97	0	137	30	26	10	32	1.90
31472656--31472695	21	1.9	21	89	0	62	25	7	17	50	1.72
31488053--31488101	20	2.5	20	78	15	57	55	6	24	14	1.62
31497779--31498553	387	2.0	387	95	0	1406	33	14	22	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31510902--31510945	20	2.2	20	84	15	56	27	4	11	56	1.53
31512037--31512111	23	3.3	22	81	7	87	25	17	22	34	1.96
31512829--31512858	14	2.1	14	93	0	51	6	3	33	56	1.42
31514579--31514629	24	2.2	23	82	10	59	74	1	19	3	1.07
31514579--31514639	20	2.9	20	80	11	61	72	1	18	8	1.18
31517938--31517981	20	2.2	20	84	15	56	27	4	11	56	1.53
31518897--31518970	23	3.2	23	82	3	87	35	31	2	31	1.72
31519810--31519931	23	5.3	23	83	6	149	26	19	24	29	1.99
31519810--31519931	46	2.7	46	83	5	167	26	19	24	29	1.99
31520273--31520320	18	2.9	16	82	11	69	64	4	10	20	1.41
31523180--31523212	18	1.9	17	88	11	50	48	6	21	24	1.72
31527320--31527348	11	2.5	12	88	11	51	0	20	0	79	0.74
31533374--31533409	16	2.1	18	85	15	58	47	0	13	38	1.44
31533375--31533409	17	2.1	17	94	5	63	45	0	14	40	1.45
31533374--31533419	17	2.7	17	80	12	51	47	0	13	39	1.42
31548070--31548279	29	7.2	29	84	2	233	37	13	25	24	1.92
31548070--31548247	87	2.0	87	91	0	284	37	14	25	23	1.92
31548070--31548279	58	3.6	58	86	0	258	37	13	25	24	1.92
31552343--31552408	13	5.1	13	86	0	87	34	30	7	27	1.85
31559551--31559735	51	3.6	51	76	9	175	22	16	29	31	1.96
31563842--31563879	10	3.6	10	86	13	58	60	2	0	36	1.11
31567765--31567818	21	2.5	21	81	3	63	20	35	7	37	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31567760--31567798	18	2.2	18	85	0	51	20	35	5	38	1.75
31577569--31577624	27	2.1	27	86	0	76	17	25	21	35	1.95
31580427--31580468	17	2.5	17	100	0	84	26	35	19	19	1.95
31597639--31597819	20	9.3	20	66	8	113	37	17	31	13	1.88
31597624--31597819	40	5.0	40	83	6	231	37	16	32	13	1.88
31597715--31597781	35	1.9	35	90	0	107	38	16	34	10	1.83
31598644--31598795	28	5.3	28	81	5	171	24	23	21	30	1.99
31602421--31602526	35	3.1	35	88	1	169	37	29	17	15	1.91
31603154--31603283	65	2.0	65	98	0	251	52	20	5	22	1.66
31606046--31606093	21	2.1	21	85	11	60	56	0	0	43	0.99
31606036--31606094	24	2.4	23	78	10	64	57	0	0	42	0.98
31607634--31607827	100	1.9	101	94	3	347	24	12	23	38	1.90
31608470--31608551	41	2.0	41	88	4	121	46	3	14	35	1.62
31609450--31609495	23	2.0	23	100	0	92	47	8	13	30	1.72
31610484--31610549	11	6.4	11	71	23	54	45	0	1	53	1.09
31611666--31611765	51	2.0	50	88	5	150	45	15	9	31	1.77
31614611--31614731	29	4.2	29	78	8	147	37	10	25	26	1.89
31614639--31614751	58	1.9	58	87	0	163	33	13	25	27	1.93
31620758--31620802	17	2.6	18	78	3	56	60	4	0	35	1.17
31624541--31624619	37	2.1	37	85	0	104	27	31	16	24	1.96
31624738--31624984	47	5.1	48	87	5	281	29	29	8	32	1.88
31624796--31624984	51	3.8	51	94	5	350	31	27	7	33	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31624796--31624984	98	1.9	100	95	4	346	31	27	7	33	1.85
31630194--31630239	22	2.1	22	91	0	74	30	6	17	45	1.73
31636377--31636522	50	2.9	50	83	0	184	21	28	23	26	1.99
31640954--31641091	50	2.8	50	84	0	177	26	23	28	21	1.99
31650193--31650235	21	2.0	21	81	4	50	62	9	2	25	1.37
31657963--31658160	51	4.0	48	75	6	171	25	17	26	30	1.97
31666073--31666594	259	2.0	260	95	1	949	37	10	19	32	1.85
31668504--31668673	40	4.3	40	87	0	216	25	28	21	24	1.99
31668504--31668650	79	1.8	79	88	1	222	26	28	20	24	1.99
31671864--31672077	71	3.0	71	84	3	261	24	21	23	30	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144