genome.fa.s11.2.7.7.80.10.50.1000.134.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  134  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41487643--41487749	23	4.7	23	76	13	96	36	14	19	29	1.91
41490421--41490493	3	24.3	3	71	10	51	31	2	5	60	1.34
41490428--41490504	25	3.2	25	76	10	63	32	3	9	54	1.50
41490736--41490772	19	1.9	19	88	0	56	40	2	5	51	1.39
41494586--41494693	38	2.8	38	98	0	207	28	0	39	31	1.57
41496201--41496268	34	2.0	34	85	5	93	35	19	22	23	1.96
41497953--41498103	79	2.0	72	85	11	196	52	14	9	23	1.70
41502982--41503022	21	2.0	21	85	9	57	60	0	2	36	1.10
41505673--41505736	28	2.2	30	83	13	89	50	3	0	46	1.17
41508743--41508795	20	2.6	21	81	6	63	66	0	1	32	1.03
41523461--41523507	20	2.3	20	78	10	51	46	4	2	46	1.34
41523524--41523583	22	2.7	22	84	5	68	41	8	3	46	1.50
41523897--41523938	20	2.1	20	90	0	66	38	26	0	35	1.57
41524703--41524751	20	2.6	19	81	9	55	44	0	0	55	0.99
41525666--41525699	18	1.9	17	88	5	50	38	0	8	52	1.33
41536645--41536761	27	4.3	27	84	0	144	38	17	11	32	1.86
41536617--41536764	54	2.7	54	80	0	152	37	17	12	32	1.88
41540496--41540906	47	8.7	47	97	0	750	32	8	30	29	1.86
41541025--41541103	37	2.1	37	90	0	122	24	18	31	25	1.98
41552437--41552479	18	2.4	18	96	0	77	34	0	27	37	1.57
41554765--41554807	20	2.2	20	100	0	86	25	37	4	32	1.77
41555613--41555646	16	2.1	16	88	0	50	47	29	0	23	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41558453--41558504	19	2.7	20	82	8	63	59	5	0	34	1.21
41559512--41559580	33	2.1	33	89	5	104	26	36	14	23	1.93
41568374--41568417	21	2.1	21	100	0	88	34	25	22	18	1.96
41573087--41573123	17	2.2	17	90	4	58	40	0	8	51	1.32
41573087--41573140	16	3.4	16	78	16	58	44	0	11	44	1.39
41573528--41573611	18	4.2	18	69	25	62	53	1	23	21	1.53
41575309--41575420	41	2.8	40	90	2	161	34	24	16	25	1.95
41575659--41575704	16	2.9	17	75	12	53	45	15	0	39	1.46
41578140--41578233	49	1.9	49	84	4	127	45	6	21	26	1.75
41585118--41585156	3	13.0	3	100	0	78	66	0	0	33	0.92
41585252--41585348	50	1.9	52	91	4	162	59	1	4	35	1.23
41585252--41585332	25	3.2	25	73	15	85	56	1	3	38	1.25
41586588--41587295	89	7.9	88	79	5	533	30	21	17	30	1.96
41586588--41587118	222	2.4	222	90	0	810	29	21	18	31	1.97
41586953--41587332	183	2.1	183	87	1	546	32	22	15	30	1.95
41586590--41587295	44	15.8	44	75	5	518	30	21	17	30	1.96
41598412--41598594	51	3.6	51	80	2	154	25	19	25	30	1.98
41598412--41598532	50	2.4	50	81	1	134	26	20	23	29	1.99
41598601--41598859	42	6.1	41	77	8	261	22	17	24	35	1.96
41598601--41598811	84	2.5	84	92	0	350	23	17	23	36	1.95
41600897--41601100	41	4.9	41	81	8	250	21	15	25	37	1.93
41600897--41601100	42	4.9	42	82	8	272	21	15	25	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41600897--41601100	84	2.4	84	96	0	372	21	15	25	37	1.93
41604800--41605048	125	2.0	125	96	0	462	30	14	12	42	1.83
41610938--41610983	20	2.3	21	85	7	60	63	4	4	28	1.33
41617722--41618280	284	2.0	284	96	0	1021	35	13	25	26	1.93
41624930--41624998	27	2.6	27	78	0	84	26	18	26	28	1.98
41627396--41627473	23	3.4	23	90	0	111	25	19	16	38	1.92
41627401--41627492	46	2.0	46	84	0	121	22	19	17	40	1.91
41627432--41627535	23	4.7	23	82	7	108	21	23	18	37	1.94
41627471--41627527	21	2.6	22	88	5	80	19	29	19	31	1.96
41632449--41632497	5	9.8	5	100	0	98	40	0	18	40	1.50
41634264--41634297	13	2.6	13	100	0	68	20	29	32	17	1.96
41640837--41642174	669	2.0	669	99	0	2658	35	18	18	28	1.94
41645498--41645542	22	2.0	22	91	0	72	33	2	15	48	1.57
41658878--41658923	17	2.8	16	83	3	56	23	4	4	67	1.27
41658878--41658916	17	2.3	18	87	12	57	23	5	2	69	1.21
41666884--41666962	29	2.7	28	76	7	77	27	12	13	45	1.80
41676911--41676959	16	3.4	15	78	13	50	40	0	8	51	1.32
41685220--41685282	33	1.9	33	83	6	83	50	15	17	15	1.78
41690007--41690040	17	2.0	17	88	0	50	44	35	11	8	1.72
41690859--41690898	5	8.4	5	83	10	57	57	2	0	40	1.12
41690859--41690896	9	4.1	9	89	3	58	57	2	0	39	1.12
41694785--41694892	26	4.2	26	86	0	135	30	23	18	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41697638--41697663	6	4.3	6	100	0	52	15	19	0	65	1.27
41712035--41712076	18	2.3	18	88	8	59	30	7	2	59	1.37
41715835--41715877	18	2.4	17	81	11	59	39	0	0	60	0.97
41716382--41716422	16	2.6	16	84	0	55	26	7	0	65	1.18
41725646--41725699	19	2.8	20	77	8	58	64	1	3	29	1.21
41727591--41728098	261	1.9	263	83	2	655	21	11	22	44	1.84
41732506--41732530	3	8.3	3	100	0	50	32	0	0	68	0.90
41738952--41739028	37	2.1	37	100	0	154	49	10	20	19	1.77
41743648--41743683	16	2.2	16	100	0	72	25	0	36	38	1.56
41743919--41743953	18	2.0	17	88	5	52	54	0	0	45	0.99
41743806--41744122	157	2.0	157	95	0	562	44	2	4	47	1.38
41744056--41744097	15	2.7	16	82	14	52	52	2	0	45	1.13
41744065--41744106	15	2.9	15	82	10	52	52	0	0	47	1.00
41747110--41747135	11	2.4	11	100	0	52	46	7	38	7	1.61
41748351--41748410	31	1.9	31	100	0	120	26	20	8	45	1.79
41753618--41753659	20	2.0	20	86	4	57	38	0	2	59	1.10
41753717--41753772	22	2.7	22	78	10	57	51	0	3	44	1.18
41753732--41753788	19	2.9	19	80	12	62	50	0	1	47	1.11
41753742--41753794	19	2.7	19	85	5	61	52	1	1	43	1.23
41758109--41758159	24	2.2	24	77	22	56	33	0	5	60	1.21
41758313--41758389	14	5.0	15	71	20	52	42	15	9	32	1.78
41758329--41758368	20	2.0	20	90	0	62	50	12	10	27	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41758317--41758383	34	1.9	35	90	3	109	46	13	8	31	1.74
41758352--41758391	14	2.9	14	84	0	53	42	17	7	32	1.77
41767028--41767085	6	9.7	6	76	23	52	53	3	0	43	1.17
41767045--41767097	25	2.1	26	86	10	74	52	5	0	41	1.25
41767028--41767144	37	3.2	35	74	19	87	53	4	1	40	1.30
41768967--41769024	29	1.9	32	86	13	88	36	3	5	55	1.39
41769055--41769125	12	5.8	13	71	23	57	49	1	2	46	1.25
41778137--41778203	24	2.7	25	72	11	66	44	2	8	43	1.50
41780113--41780144	15	2.1	15	94	0	55	68	9	6	15	1.36
41782552--41782799	91	2.7	90	79	5	259	41	11	12	34	1.79
41786114--41786234	9	13.4	9	87	0	179	40	22	12	24	1.88
41786649--41786738	42	2.2	40	84	9	110	8	14	1	75	1.09
41786849--41786878	2	15.0	2	92	0	51	0	46	3	50	1.18
41804318--41804365	18	2.7	18	73	20	55	39	12	2	45	1.54
41805284--41805322	18	2.2	18	90	0	60	12	35	35	15	1.86
41810176--41810224	18	2.7	18	80	0	62	38	16	2	42	1.60
41811978--41812122	41	3.6	41	83	0	175	28	20	27	23	1.99
41821890--41822113	104	2.2	104	93	1	378	17	19	31	31	1.95
41822032--41822183	71	2.1	72	92	1	252	23	17	29	30	1.97
41826179--41826320	30	4.7	30	76	10	128	32	13	14	40	1.84
41826192--41826319	60	2.1	59	83	8	152	32	12	14	40	1.83
41826447--41826503	17	3.1	17	68	18	51	33	8	10	47	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41842911--41842957	22	2.2	21	85	7	60	21	8	14	55	1.66
41844597--41844685	40	2.2	38	75	11	88	55	0	3	41	1.17
41849723--41849781	26	2.3	26	87	0	82	32	16	11	38	1.86
41851888--41851994	54	2.0	54	88	0	160	16	27	28	28	1.97
41865658--41865969	158	2.0	158	95	0	561	41	23	8	26	1.84
41874254--41874301	19	2.5	19	100	0	96	27	22	14	35	1.93
41896426--41896458	16	2.1	16	100	0	66	18	24	21	36	1.95
41898492--41898533	6	7.0	6	100	0	84	0	16	0	83	0.65
41907803--41907833	13	2.4	13	100	0	62	32	0	6	61	1.21
41921705--41921761	25	2.3	25	81	6	62	19	31	21	28	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144