genome.fa.s11.2.7.7.80.10.50.1000.131.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  131  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40755909--40756012	46	2.3	44	76	11	102	59	2	7	29	1.40
40756328--40756364	3	12.0	3	88	5	56	62	0	2	35	1.10
40756319--40756366	22	2.2	22	81	7	62	64	2	2	31	1.16
40758421--40758459	21	1.9	20	84	5	51	30	5	25	38	1.78
40761247--40761277	16	1.9	16	93	0	53	32	29	19	19	1.96
40762049--40762169	36	3.4	36	86	3	172	35	20	14	29	1.92
40762051--40762192	73	2.0	72	84	4	187	36	19	13	30	1.90
40768307--40768382	6	12.8	6	81	10	50	71	10	7	10	1.32
40768372--40768416	15	3.0	15	80	0	54	71	0	26	2	0.98
40770567--40770812	129	1.9	129	94	0	438	31	20	24	23	1.98
40770899--40771028	45	2.9	45	81	10	142	25	21	29	23	1.99
40770799--40771195	218	1.8	218	90	2	645	28	19	25	27	1.99
40770990--40771102	44	2.6	44	81	2	129	27	19	22	30	1.98
40772036--40772095	19	3.4	17	76	13	57	1	16	6	75	1.10
40773598--40773993	197	2.0	198	97	0	749	34	15	10	39	1.82
40774565--40774909	36	9.3	37	81	3	374	34	20	15	30	1.93
40774565--40774909	73	4.7	74	81	4	383	34	20	15	30	1.93
40774561--40774889	109	3.0	109	88	2	451	34	20	15	29	1.94
40776600--40776667	16	4.4	17	71	16	58	64	1	1	32	1.11
40776608--40776669	16	4.1	15	76	14	65	64	1	1	32	1.13
40776607--40776672	29	2.3	29	86	5	89	63	1	1	33	1.13
40776856--40776957	40	2.5	41	78	10	102	46	1	0	50	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40777117--40777175	19	3.2	19	81	15	70	38	1	1	57	1.19
40777117--40777203	10	9.1	10	71	16	60	35	1	2	60	1.17
40777105--40777165	9	6.6	9	77	17	54	44	1	1	52	1.20
40777186--40777220	17	2.0	18	88	5	54	42	0	0	57	0.99
40779389--40779447	9	6.4	9	84	11	75	38	27	10	23	1.87
40779390--40779444	17	3.1	17	79	10	65	38	29	10	21	1.88
40779415--40779456	20	2.1	20	86	0	57	45	26	9	19	1.80
40781642--40781678	18	2.1	18	89	0	56	18	21	0	59	1.38
40782922--40782958	18	2.1	18	89	0	56	18	21	0	59	1.38
40792268--40792297	16	1.9	16	93	6	53	30	13	26	30	1.94
40794279--40794346	35	1.9	35	84	3	91	29	7	20	42	1.79
40797723--40797756	15	2.2	15	89	5	50	82	0	0	17	0.67
40801298--40801326	8	3.8	8	90	9	51	65	0	0	34	0.93
40801295--40801330	15	2.5	15	86	4	56	69	0	0	30	0.89
40814493--40814540	25	1.9	25	83	8	62	60	2	8	29	1.37
40818531--40818595	32	2.0	32	100	0	130	30	6	36	26	1.81
40825637--40825671	18	2.0	18	88	5	54	51	0	0	48	1.00
40825897--40825955	16	3.7	16	73	13	50	59	0	0	40	0.97
40826375--40826412	17	2.2	17	86	9	51	57	2	0	39	1.12
40826901--40826932	5	6.4	5	100	0	64	37	0	0	62	0.95
40827573--40827667	30	3.2	31	88	5	126	28	21	3	47	1.66
40827563--40827710	60	2.5	60	76	5	158	33	18	3	43	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40828043--40828101	3	18.0	3	86	13	73	66	0	33	0	0.92
40828043--40828101	13	4.5	13	86	14	77	66	0	33	0	0.92
40828043--40828101	10	6.3	10	79	13	72	66	0	33	0	0.92
40828154--40828196	18	2.3	18	84	4	50	30	51	16	2	1.57
40829183--40829493	17	18.2	17	73	10	181	32	9	12	45	1.75
40829174--40829493	34	9.3	34	74	10	208	31	10	12	45	1.74
40829277--40829456	99	1.8	100	86	3	265	36	7	10	45	1.66
40829491--40829528	20	1.9	20	94	0	67	47	7	0	44	1.32
40841605--40842294	73	9.5	73	99	0	1334	40	12	16	29	1.86
40842381--40842634	85	2.9	88	80	10	290	26	18	18	36	1.94
40842621--40842654	15	2.5	13	82	17	50	11	8	8	70	1.34
40842626--40842654	15	1.9	15	100	0	58	13	6	6	72	1.26
40842743--40843065	54	6.1	54	85	8	448	30	16	16	37	1.90
40842751--40843065	105	3.0	105	94	2	537	30	16	16	36	1.91
40843335--40843436	30	3.4	31	85	5	122	30	21	2	45	1.67
40843335--40843464	30	4.4	29	78	10	111	33	20	2	44	1.64
40843795--40843866	3	24.0	3	76	16	53	70	0	27	1	0.95
40843795--40843866	18	4.0	17	76	16	65	70	0	27	1	0.95
40843808--40843854	24	2.0	24	87	8	69	70	0	29	0	0.88
40843799--40843857	29	2.1	29	84	9	77	71	0	27	1	0.96
40843798--40843865	35	2.0	34	88	2	100	70	0	27	1	0.96
40843809--40843861	24	2.2	24	83	6	63	73	0	26	0	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40844015--40844049	13	2.7	13	86	0	52	71	2	25	0	1.00
40844177--40844225	8	5.8	8	78	21	55	81	2	14	2	0.87
40844178--40844228	17	3.0	16	83	11	66	78	1	17	1	0.94
40844174--40844227	25	2.2	24	84	12	67	81	1	14	1	0.86
40844367--40844404	16	2.3	17	86	4	51	23	0	2	73	0.95
40844545--40844714	18	9.5	18	70	17	95	32	14	8	44	1.75
40844545--40844713	34	4.8	34	74	13	117	31	14	8	44	1.75
40844568--40844621	16	3.2	16	75	14	56	35	14	9	40	1.78
40844545--40844714	17	9.5	17	69	17	78	32	14	8	44	1.75
40864969--40865634	314	2.1	311	80	7	719	29	16	18	35	1.93
40864969--40865665	313	2.2	311	80	7	729	29	15	18	36	1.92
40873129--40873186	27	2.2	27	84	3	73	37	12	3	46	1.58
40873819--40873875	20	2.8	21	89	5	82	64	10	15	8	1.48
40875632--40875679	18	2.7	18	70	0	51	4	8	10	77	1.12
40877021--40877081	24	2.4	26	84	10	74	29	0	3	67	1.07
40883899--40883969	30	2.4	30	78	2	72	30	9	9	49	1.69
40884191--40884234	20	2.2	20	84	8	54	56	9	2	31	1.43
40887291--40887315	12	2.1	12	100	0	50	36	0	32	32	1.58
40894813--40894902	43	2.1	43	81	8	103	53	4	1	41	1.28
40896701--40896742	22	1.9	22	95	0	75	40	16	9	33	1.81
40900125--40900166	16	2.7	16	77	3	50	47	0	0	52	1.00
40903931--40903996	31	2.1	31	86	5	89	34	13	10	40	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40908896--40909008	47	2.4	47	81	0	136	32	9	30	26	1.89
40909127--40909205	37	2.1	37	88	0	113	25	18	30	25	1.98
40917372--40917584	75	2.8	75	80	2	248	26	13	25	34	1.93
40919516--40919587	23	3.1	23	80	4	83	16	19	22	41	1.90
40924617--40924706	45	2.0	45	91	0	144	32	23	18	25	1.97
40926663--40926696	10	3.4	10	91	0	50	20	17	47	14	1.83
40929005--40929210	76	2.7	77	83	2	263	26	15	23	34	1.94
40929165--40929260	50	1.9	50	89	0	147	25	15	27	32	1.96
40929106--40929259	25	6.1	25	64	15	66	25	15	25	33	1.95
40931031--40931085	10	5.0	11	80	10	51	45	0	1	52	1.11
40931039--40931075	10	3.8	10	89	3	58	51	0	0	48	1.00
40931794--40931836	24	1.9	24	86	13	65	34	0	9	55	1.32
40934325--40934442	3	39.3	3	100	0	236	66	0	0	33	0.92
40936242--40936271	15	1.9	16	93	6	53	26	13	16	43	1.85
40937356--40937484	50	2.5	50	82	2	159	37	13	14	34	1.85
40939309--40939340	15	2.1	15	94	0	55	6	15	0	78	0.95
40939396--40939441	14	3.2	14	81	3	56	15	19	0	65	1.28
40939397--40939434	18	2.1	18	85	9	51	18	21	0	60	1.36
40940331--40940360	15	2.0	15	93	0	51	20	10	0	70	1.16
40945237--40945462	50	4.5	50	81	3	240	23	30	20	25	1.98
40945237--40945462	100	2.2	100	83	2	265	23	30	20	25	1.98
40952237--40952293	28	2.0	28	100	0	114	40	24	7	28	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40956949--40957063	40	2.9	40	88	3	178	28	22	17	31	1.97
40957124--40957219	49	2.0	49	89	0	147	30	20	16	32	1.95
40957163--40957295	40	3.3	40	80	3	144	28	21	17	32	1.96
40957173--40957300	39	3.2	40	80	1	143	30	21	17	30	1.96
40960289--40960335	24	2.0	24	100	0	94	51	8	0	40	1.33
40960288--40960349	24	2.6	24	85	12	76	51	6	1	40	1.37
40966379--40966564	43	4.3	43	88	0	264	31	31	17	19	1.95
40966379--40966590	43	4.9	42	83	5	237	30	30	16	21	1.96
40976664--40976696	16	2.0	17	88	5	50	63	0	15	21	1.30
40992274--40992306	16	2.0	17	88	5	50	63	0	15	21	1.30

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144