genome.fa.s11.2.7.7.80.10.50.1000.139.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  139  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43063569--43063702	40	3.3	40	80	6	137	30	20	18	30	1.96
43063376--43063829	196	2.4	184	83	8	529	29	20	19	30	1.97
43063756--43063878	40	3.1	39	82	4	131	25	17	21	34	1.96
43066085--43066123	15	2.6	15	84	8	53	30	7	2	58	1.39
43066125--43066170	15	3.1	14	84	9	56	21	10	4	63	1.44
43066113--43066158	21	2.2	21	88	0	65	26	8	2	63	1.35
43066137--43066170	14	2.3	15	90	5	52	20	11	5	61	1.50
43066199--43066332	3	45.7	3	68	18	68	27	7	1	63	1.30
43066238--43066301	23	2.8	23	85	0	83	32	6	3	57	1.39
43066242--43066299	20	2.9	20	82	7	73	32	5	3	58	1.37
43066411--43066449	3	13.0	3	84	10	53	28	2	2	66	1.18
43066828--43066876	20	2.2	20	86	13	62	26	4	4	65	1.29
43067283--43067611	130	2.6	126	84	4	385	28	17	19	34	1.95
43075397--43075433	17	2.2	17	90	0	56	29	16	21	32	1.95
43075401--43075440	17	2.4	17	82	0	53	27	25	22	25	2.00
43076382--43076594	45	4.7	45	77	2	169	22	20	14	42	1.88
43080544--43080728	94	2.0	94	98	0	361	23	31	19	25	1.98
43081203--43081238	6	5.8	6	90	3	54	80	0	13	5	0.88
43082619--43082683	29	2.2	29	97	0	121	44	3	20	32	1.67
43088046--43088099	11	5.0	11	88	4	83	18	46	7	27	1.76
43088633--43088707	18	4.2	18	80	0	87	29	22	13	34	1.92
43092672--43092714	11	4.0	11	81	6	52	18	46	4	30	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43093858--43093950	35	2.7	35	83	1	116	24	26	16	32	1.96
43095358--43095422	3	21.7	3	100	0	130	33	0	32	33	1.58
43098346--43098385	21	1.9	21	84	0	53	27	35	20	17	1.95
43099487--43099657	65	2.6	65	99	0	333	19	29	27	23	1.98
43108442--43108502	30	2.1	29	93	3	104	36	22	14	26	1.93
43111308--43111332	6	4.2	6	100	0	50	0	32	0	68	0.90
43111947--43112040	37	2.4	36	77	11	98	26	17	24	31	1.97
43114798--43114832	12	2.8	13	86	8	54	65	0	0	34	0.93
43116423--43116449	4	6.8	4	100	0	54	22	0	0	77	0.76
43116937--43117000	28	2.3	28	77	20	71	67	0	17	15	1.24
43121780--43121820	21	2.0	21	90	0	64	29	21	29	19	1.98
43127512--43127587	24	3.2	24	68	17	68	63	5	5	26	1.37
43134668--43134704	13	2.8	13	100	0	74	16	45	29	8	1.76
43140452--43140489	19	2.0	19	94	0	67	42	13	0	44	1.43
43143092--43143138	19	2.4	20	75	13	53	25	8	0	65	1.20
43143132--43143173	19	2.2	19	87	8	59	33	7	0	59	1.25
43143225--43143269	19	2.4	19	85	14	58	40	0	2	57	1.11
43149904--43149945	22	1.9	22	95	0	75	57	0	0	42	0.99
43152459--43152559	51	2.0	52	98	2	195	40	11	33	13	1.82
43156620--43156658	18	2.1	19	86	13	55	48	0	15	35	1.45
43158513--43158565	21	2.5	21	96	0	97	43	9	22	24	1.83
43158842--43158883	18	2.2	20	87	8	61	38	0	7	54	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43159697--43159758	29	2.1	29	90	0	97	20	29	24	25	1.99
43163761--43163800	20	2.0	20	95	0	71	45	12	25	17	1.83
43163976--43164025	26	1.9	26	83	0	64	44	22	6	28	1.76
43171635--43171788	42	3.7	40	81	6	155	31	16	24	28	1.96
43178214--43178251	20	1.9	20	94	0	67	31	0	2	65	1.06
43179425--43179461	17	2.2	17	90	0	56	48	0	0	51	1.00
43181896--43182150	117	2.2	120	88	7	380	52	3	1	42	1.28
43190012--43190115	5	20.8	5	81	13	65	82	4	1	10	0.89
43190042--43190104	1	63.0	1	77	0	63	88	7	0	3	0.60
43190045--43190104	8	7.6	8	85	10	79	88	8	0	3	0.62
43190042--43190104	16	4.1	15	88	8	90	88	7	0	3	0.60
43190015--43190126	16	6.9	16	82	7	77	81	5	1	11	0.93
43190085--43190131	17	2.9	17	87	6	62	76	2	2	19	0.99
43202879--43202964	42	2.0	42	97	0	163	40	24	6	27	1.81
43204082--43204132	25	2.0	25	88	3	75	17	21	27	33	1.96
43210188--43210234	20	2.3	20	85	7	60	38	10	21	29	1.87
43210284--43210342	26	2.3	26	88	11	88	30	18	23	27	1.98
43210284--43210352	25	2.7	25	82	10	70	28	21	24	24	1.99
43215326--43215461	42	3.2	43	91	4	213	44	16	9	29	1.80
43218316--43218358	23	1.9	23	86	13	63	41	0	9	48	1.35
43219052--43219097	23	2.0	23	82	0	56	50	6	10	32	1.63
43220889--43220992	47	2.2	47	77	3	111	22	19	24	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43221433--43221509	39	2.0	40	84	7	104	40	7	12	38	1.73
43228043--43228108	16	4.0	16	81	11	71	40	18	7	33	1.79
43228051--43228132	34	2.4	34	81	4	94	37	14	10	36	1.82
43228315--43228422	23	4.7	23	82	8	123	33	22	26	17	1.96
43228291--43228412	45	2.7	46	79	12	137	33	20	27	18	1.96
43231359--43231408	26	2.0	24	84	7	64	56	8	0	36	1.29
43231555--43231584	10	2.9	10	95	5	51	0	10	0	90	0.47
43231555--43231581	11	2.5	11	100	0	54	0	7	0	92	0.38
43231675--43231716	22	1.9	21	85	9	57	28	21	2	47	1.63
43232013--43232098	43	2.0	42	97	2	163	36	20	6	36	1.80
43232396--43232420	13	1.9	13	100	0	50	40	28	0	32	1.57
43238312--43238350	19	2.0	20	90	5	62	17	12	0	69	1.19
43242843--43242872	14	2.1	14	100	0	60	13	26	0	60	1.34
43243124--43243258	65	2.1	65	91	2	218	24	26	9	39	1.86
43253305--43253615	156	2.0	155	98	0	595	47	12	10	28	1.75
43258024--43258078	25	2.1	28	83	10	71	60	1	27	10	1.41
43258526--43258565	11	3.6	11	79	0	53	20	15	7	57	1.61
43258531--43258573	22	2.0	22	95	0	77	23	11	6	58	1.57
43258675--43258714	11	3.6	11	79	0	53	20	15	7	57	1.61
43258680--43258722	22	2.0	22	95	0	77	23	11	6	58	1.57
43258515--43258812	149	2.0	149	100	0	596	27	8	8	56	1.56
43259555--43259579	13	1.9	13	100	0	50	48	16	4	32	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43259594--43259625	16	2.0	16	93	0	55	56	21	0	21	1.43
43279688--43279751	24	2.6	25	82	4	78	34	31	14	20	1.92
43279877--43279978	24	4.0	24	74	13	96	39	22	11	26	1.88
43279871--43279971	53	1.9	53	91	0	166	41	22	11	23	1.87
43296027--43296058	16	2.0	16	100	0	64	62	12	18	6	1.50
43298913--43299029	23	4.9	23	82	5	119	23	22	18	35	1.96
43298913--43299026	47	2.4	47	85	8	133	24	22	18	34	1.96
43298913--43299044	23	5.5	23	79	10	99	25	21	19	32	1.97
43300029--43300156	66	1.9	65	80	9	143	20	25	28	25	1.99
43301180--43301227	24	2.0	24	95	0	87	20	14	29	35	1.93
43306732--43306777	24	1.9	24	90	0	74	21	26	19	32	1.97
43310736--43310768	17	1.9	17	100	0	66	48	12	0	39	1.40
43314263--43314333	26	2.7	27	84	6	92	43	11	14	30	1.80
43317680--43317880	90	2.2	90	83	2	242	31	19	20	28	1.97
43318909--43318965	15	3.9	15	79	20	59	47	1	0	50	1.11
43321107--43321173	4	16.8	4	100	0	134	25	0	23	50	1.49
43328747--43328793	18	2.6	18	83	6	60	44	29	10	14	1.79
43330300--43330346	24	2.0	24	95	0	85	34	10	14	40	1.81
43333179--43333255	18	4.4	17	81	14	77	37	32	15	14	1.88
43333441--43333497	3	19.0	3	100	0	114	33	0	0	66	0.92
43334822--43334883	5	12.4	5	100	0	124	40	0	0	59	0.97
43336140--43336173	15	2.3	15	94	0	59	35	0	14	50	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43336553--43336639	21	4.0	23	80	10	92	14	21	25	37	1.92
43337768--43337800	15	2.3	15	89	5	50	51	0	6	42	1.26
43338114--43338152	13	3.2	12	83	16	53	48	5	0	46	1.24
43340549--43340605	24	2.5	23	81	13	73	49	1	0	49	1.11
43340548--43340605	11	5.1	11	80	12	64	50	1	0	48	1.11
43340647--43340685	18	2.2	18	85	0	51	48	2	2	46	1.29
43341318--43341354	19	1.9	19	89	10	58	35	8	24	32	1.85
43344799--43344886	43	2.0	44	91	2	142	26	17	13	43	1.86
43345942--43346027	40	2.1	41	91	2	138	34	22	23	19	1.96
43346640--43346688	24	2.0	24	100	0	98	53	0	4	42	1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144