genome.fa.s11.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  6  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1191666--1191738	28	2.5	28	84	8	85	68	6	1	23	1.21
1192235--1192304	30	2.2	33	75	19	85	57	12	4	25	1.54
1192243--1192304	30	2.1	30	90	3	99	58	12	3	25	1.50
1192334--1192376	22	2.0	22	85	0	59	58	11	11	18	1.63
1192341--1192381	11	3.7	11	80	0	55	56	9	14	19	1.66
1199638--1199742	42	2.5	42	80	9	115	16	37	23	22	1.94
1213226--1213434	53	4.0	53	83	2	246	35	13	23	27	1.92
1217121--1217177	30	1.9	30	85	7	80	21	36	29	12	1.90
1225364--1225441	37	2.1	37	86	11	108	42	8	15	33	1.78
1230171--1230247	24	3.3	23	74	3	73	32	22	10	35	1.88
1232931--1232962	12	2.7	12	100	0	64	12	9	15	62	1.54
1234075--1234128	21	2.6	21	91	2	83	40	16	22	20	1.91
1235598--1235654	28	2.0	28	90	6	89	56	0	5	38	1.22
1236539--1236659	43	2.8	43	83	7	156	25	20	25	28	1.99
1246897--1246932	17	2.1	18	94	5	65	16	5	13	63	1.47
1247577--1247612	17	2.1	17	94	0	63	36	5	2	55	1.38
1258458--1258491	15	2.3	15	89	0	50	32	14	2	50	1.58
1260271--1260380	29	3.6	29	70	20	87	54	3	0	41	1.18
1260233--1260447	112	1.9	116	91	4	357	52	4	0	42	1.24
1260338--1260410	10	7.9	10	66	17	50	56	1	0	42	1.08
1270500--1270547	15	3.3	14	80	8	60	52	10	0	37	1.36
1270827--1270851	11	2.3	11	100	0	50	40	8	16	36	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1279770--1279894	39	3.2	39	82	0	160	37	16	28	16	1.91
1291731--1291797	33	2.0	33	97	0	125	34	14	13	37	1.86
1304558--1304790	118	2.0	118	92	0	385	40	8	16	35	1.78
1307232--1307265	5	6.8	5	100	0	68	0	38	0	61	0.96
1307974--1308084	28	4.0	28	85	0	141	22	20	22	34	1.97
1309396--1309449	27	2.0	28	82	7	67	24	31	11	33	1.90
1311966--1312001	8	4.5	8	92	0	63	22	2	13	61	1.46
1321097--1321121	9	2.8	9	100	0	50	20	32	0	48	1.50
1323522--1324471	95	10.0	95	100	0	1900	34	10	20	34	1.87
1330061--1330106	20	2.3	20	78	14	51	71	4	4	19	1.20
1331987--1332041	26	2.3	22	77	20	56	58	1	0	40	1.09
1339078--1339154	38	2.0	38	97	0	145	20	23	14	41	1.89
1339560--1339628	33	2.1	33	91	0	111	44	36	4	14	1.65
1344231--1344263	17	1.9	17	88	11	50	51	27	9	12	1.69
1365524--1365599	35	2.2	35	83	4	91	32	22	19	25	1.97
1372623--1372659	18	2.1	18	100	0	74	37	10	5	45	1.62
1377277--1377335	16	3.7	16	88	4	84	55	1	1	40	1.20
1377263--1377343	32	2.7	30	80	12	85	51	1	2	44	1.22
1393059--1393208	49	3.1	48	72	8	133	18	25	21	34	1.96
1393065--1393196	24	5.4	24	71	8	88	19	26	21	32	1.97
1393130--1393208	25	3.2	23	79	12	70	16	25	22	35	1.95
1396434--1396474	20	2.0	20	85	0	55	36	17	24	21	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1397705--1397767	6	10.7	6	75	16	60	4	15	0	79	0.90
1400562--1401485	50	18.4	50	98	0	1713	22	18	35	23	1.96
1400613--1401598	50	19.7	50	96	0	338	23	18	34	23	1.96
1403705--1403827	59	2.1	59	95	0	219	29	21	8	41	1.81
1407150--1407180	16	1.9	16	100	0	62	38	12	12	35	1.82
1411446--1411524	40	2.0	40	82	0	95	24	15	18	41	1.89
1412193--1412245	24	2.3	22	84	15	63	13	11	3	71	1.26
1417891--1417964	17	4.4	17	75	5	60	25	8	20	45	1.78
1417891--1417983	34	2.7	34	78	3	98	24	10	20	44	1.83
1417902--1417988	17	5.1	17	72	5	68	25	11	19	43	1.84
1417971--1418124	68	2.3	68	87	0	218	25	11	24	38	1.89
1417971--1418124	34	4.5	34	69	4	105	25	11	24	38	1.89
1418275--1418326	26	2.0	26	85	7	70	26	13	23	36	1.92
1422539--1422563	12	2.1	12	100	0	50	16	24	0	60	1.36
1428778--1428901	54	2.3	54	88	2	178	37	25	16	21	1.93
1430967--1431002	18	2.0	18	94	0	63	30	5	11	52	1.59
1438438--1438487	25	2.0	25	92	0	82	24	8	32	36	1.84
1452643--1452714	36	2.0	35	94	2	126	51	12	5	29	1.62
1464456--1464492	11	3.4	11	96	0	65	62	13	0	24	1.31
1465545--1465627	40	2.1	40	86	4	114	36	16	27	19	1.93
1466873--1467601	363	2.0	362	94	0	1262	39	19	22	18	1.92
1469562--1469611	26	1.9	26	84	8	66	20	22	32	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1469591--1469733	42	3.4	42	75	7	128	25	17	23	33	1.96
1469619--1469741	43	2.8	46	77	13	138	23	19	24	32	1.97
1474181--1474213	7	4.7	7	100	0	66	15	69	0	15	1.19
1476893--1476978	20	4.2	20	76	10	77	33	1	6	58	1.33
1482264--1482326	31	2.1	31	85	8	85	39	17	6	36	1.75
1482275--1482343	31	2.3	30	82	9	86	36	14	4	44	1.65
1482796--1482851	22	2.5	22	91	2	85	28	28	0	42	1.56
1482874--1482924	22	2.3	22	89	0	84	27	33	0	39	1.57
1482794--1482960	73	2.3	73	93	1	282	26	28	0	44	1.59
1496108--1496133	7	3.7	7	100	0	52	26	0	15	57	1.38
1497233--1497320	42	2.0	44	85	8	119	39	0	11	48	1.39
1497331--1497415	23	3.4	23	79	16	98	47	27	1	24	1.60
1497328--1497513	29	6.6	29	80	7	222	45	29	1	24	1.60
1497527--1497650	18	6.7	20	74	22	119	38	7	3	50	1.46
1497516--1497650	37	3.6	37	98	0	261	39	6	2	51	1.44
1498152--1498377	124	1.8	124	92	0	380	32	22	15	28	1.95
1504619--1504755	51	2.7	51	79	0	175	39	6	13	40	1.71
1507354--1507484	66	2.0	66	98	0	253	28	19	29	22	1.98
1507487--1507623	51	2.7	51	79	0	175	39	6	13	40	1.71
1509373--1509498	49	2.7	46	72	13	112	38	6	3	51	1.43
1509718--1509811	46	2.0	46	100	0	188	31	17	13	37	1.89
1511609--1511678	25	2.8	24	84	4	77	30	25	21	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1516622--1516709	46	2.0	44	81	4	104	27	21	17	34	1.95
1516676--1516756	34	2.4	34	93	0	135	25	23	22	28	1.99
1517231--1517271	18	2.3	18	87	8	57	19	46	24	9	1.80
1525527--1525580	18	3.1	17	81	7	63	35	20	0	44	1.52
1527380--1527641	39	6.7	40	88	7	337	24	27	22	25	2.00
1535409--1535592	79	2.3	81	82	11	222	25	27	22	25	2.00
1535409--1535592	40	4.6	41	83	12	199	25	27	22	25	2.00
1540237--1540314	39	2.0	39	82	7	95	43	8	15	32	1.78
1542387--1542416	11	2.6	11	94	5	51	60	0	3	36	1.14
1545265--1545337	36	2.0	36	89	5	112	38	17	19	24	1.93
1546818--1546868	25	2.0	25	100	0	102	43	3	19	33	1.70
1552865--1552895	2	15.5	2	100	0	62	0	0	48	51	1.00
1553713--1553858	73	2.0	74	93	1	249	21	12	15	50	1.76
1568538--1568674	25	5.4	25	72	9	100	32	21	27	18	1.97
1573016--1573071	25	2.2	25	87	6	78	50	3	8	37	1.51
1573016--1573071	24	2.2	26	84	12	73	50	3	8	37	1.51
1574394--1574718	172	1.9	173	85	3	458	31	14	12	41	1.84
1578915--1578978	28	2.3	28	91	0	101	29	17	26	26	1.97
1578931--1578993	28	2.2	28	91	0	99	33	12	19	34	1.89
1583179--1583220	22	2.0	21	85	4	57	33	2	2	61	1.21
1583584--1583611	5	5.6	5	100	0	56	78	0	0	21	0.75
1585758--1585876	58	2.1	58	87	3	168	35	11	20	32	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1593817--1593879	29	2.2	29	88	0	90	28	23	20	26	1.99
1593953--1594007	28	2.0	27	96	0	92	20	18	21	38	1.92
1594441--1594499	29	2.0	29	86	0	82	23	22	25	28	1.99
1594619--1594648	15	2.0	15	93	0	51	56	6	13	23	1.60
1598043--1598068	13	2.0	13	100	0	52	38	0	0	61	0.96
1601990--1602114	50	2.4	52	78	5	139	35	13	16	35	1.87
1607749--1607788	19	2.1	19	100	0	80	20	20	15	45	1.86
1613898--1613958	30	2.0	30	100	0	122	45	6	22	24	1.76
1613951--1614118	88	1.9	88	98	0	327	36	9	27	26	1.87
1614596--1614627	11	2.6	13	90	9	50	46	3	6	43	1.44

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144