genome.fa.s11.2.7.7.80.10.50.1000.115.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  115  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35639048--35640887	132	13.9	132	94	0	3168	29	24	18	27	1.98
35642248--35642291	5	9.0	5	90	9	65	0	0	15	84	0.63
35642236--35642290	16	3.5	15	81	13	74	0	0	12	87	0.55
35642229--35642288	11	5.5	11	86	7	77	0	1	13	85	0.69
35645952--35646146	98	2.0	98	96	0	363	36	24	10	28	1.88
35647486--35647543	22	2.6	22	84	7	73	43	17	3	36	1.66
35647499--35647577	21	3.8	19	80	12	77	39	16	7	36	1.77
35647533--35647576	21	2.1	21	100	0	88	38	13	9	38	1.77
35647824--35647879	15	3.7	15	71	7	51	35	8	0	55	1.31
35662786--35662847	27	2.3	27	83	5	72	33	14	24	27	1.94
35674576--35674862	50	5.6	50	80	6	265	24	28	19	27	1.99
35679220--35679258	20	2.0	20	100	0	78	43	25	10	20	1.83
35680124--35680251	40	3.2	39	81	5	143	33	20	23	22	1.97
35680322--35680466	41	3.5	41	76	11	127	24	22	26	26	2.00
35680473--35680514	20	2.2	19	86	4	57	23	4	4	66	1.30
35681120--35681171	21	2.5	21	78	9	61	25	0	40	34	1.56
35681151--35681180	15	2.0	15	93	0	51	23	0	33	43	1.54
35683115--35683174	24	2.5	24	86	2	86	23	10	10	56	1.62
35685262--35685525	43	6.2	43	83	0	260	21	17	30	30	1.96
35685262--35685525	86	3.1	86	82	1	307	21	17	30	30	1.96
35685965--35686183	50	4.3	50	84	3	231	24	29	20	26	1.99
35694315--35694360	13	3.5	13	84	3	56	52	17	4	26	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35694953--35695115	54	3.0	54	92	0	274	30	31	20	17	1.96
35696877--35696920	22	2.0	22	95	0	79	22	25	15	36	1.94
35698093--35698385	147	2.0	146	96	0	541	26	25	12	34	1.92
35723906--35723956	23	2.2	23	89	0	75	27	7	21	43	1.80
35725431--35725625	50	3.9	50	85	2	266	21	33	21	24	1.97
35725431--35725667	100	2.3	100	86	4	312	22	32	19	24	1.97
35728689--35728736	23	2.1	23	88	0	69	25	6	22	45	1.75
35729086--35729190	52	2.0	52	94	0	183	24	17	11	46	1.81
35734978--35735103	50	2.5	51	83	6	150	23	17	26	31	1.97
35740060--35740097	18	2.1	18	90	9	60	15	5	5	73	1.19
35740886--35740994	40	2.8	40	78	4	114	42	22	15	20	1.89
35741062--35741157	41	2.3	41	90	0	165	19	21	25	33	1.97
35742281--35742314	13	2.5	13	90	4	50	23	0	32	44	1.54
35742711--35742811	10	9.8	11	81	11	60	50	0	3	45	1.20
35742704--35742801	30	3.3	28	86	9	92	50	0	4	45	1.20
35742713--35742800	30	2.9	30	91	6	135	48	0	3	47	1.18
35742709--35742816	40	2.7	39	88	4	144	49	0	3	46	1.26
35747242--35747654	43	9.6	43	81	5	311	23	17	31	27	1.97
35747242--35747638	86	4.6	85	83	4	390	23	17	32	26	1.97
35747316--35747638	129	2.5	129	85	3	443	24	18	33	23	1.97
35749324--35749389	20	3.3	20	66	8	62	16	33	16	33	1.92
35749306--35749524	40	5.5	40	84	5	291	21	29	17	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35754397--35754446	26	1.9	26	87	0	73	28	26	18	28	1.98
35757559--35757829	43	6.3	43	89	2	386	25	32	19	22	1.97
35757559--35757890	129	2.6	128	84	4	384	28	30	18	21	1.97
35762817--35762901	39	2.2	39	82	4	100	21	18	18	41	1.91
35763535--35763573	16	2.4	17	95	4	71	46	0	0	53	1.00
35763681--35763826	7	20.9	7	67	13	50	40	35	1	22	1.63
35763698--35763757	21	2.9	20	77	20	61	35	41	0	23	1.55
35763822--35763872	22	2.3	23	77	16	63	45	25	1	27	1.64
35764161--35764206	20	2.4	20	82	7	51	63	4	4	28	1.33
35764213--35764446	41	5.7	41	89	0	351	29	29	21	18	1.97
35764442--35764516	40	1.9	40	83	5	100	21	21	24	33	1.97
35765781--35766077	40	7.4	40	85	3	382	20	29	17	32	1.95
35787164--35787204	21	2.0	20	85	4	55	26	2	4	65	1.25
35787529--35787570	19	2.2	19	83	8	50	69	4	0	26	1.08
35788260--35788314	26	2.1	27	83	12	71	27	3	0	69	1.05
35791149--35791580	106	4.1	106	91	0	670	32	16	18	32	1.93
35793438--35793575	66	2.1	66	82	4	161	21	29	15	32	1.95
35793665--35794303	129	5.0	129	89	1	879	26	21	20	30	1.98
35793665--35794264	44	13.9	43	66	11	212	26	22	20	30	1.98
35793932--35794304	85	4.4	85	68	12	258	26	21	21	29	1.99
35805559--35805985	106	4.0	106	90	0	640	33	18	15	32	1.92
35814563--35814752	40	4.8	40	92	0	308	22	28	22	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35819329--35819386	16	3.6	16	77	13	57	50	1	1	46	1.22
35825092--35825183	48	1.9	47	84	2	121	36	27	15	20	1.92
35828608--35828643	17	2.1	18	89	5	56	44	5	13	36	1.68
35831546--35831794	50	4.9	50	81	6	245	27	21	28	22	1.99
35832008--35832046	20	2.0	20	89	0	60	53	2	25	17	1.56
35833523--35833687	60	2.8	59	77	8	163	24	24	12	38	1.90
35833523--35833713	30	6.3	30	75	4	134	25	24	12	38	1.90
35835742--35835900	45	3.6	45	83	4	196	35	26	15	23	1.94
35835778--35835945	45	3.7	45	79	5	126	34	23	15	26	1.94
35835778--35835945	90	1.9	90	82	0	210	34	23	15	26	1.94
35843790--35844048	30	8.7	30	77	9	235	20	25	11	41	1.87
35843851--35844103	119	2.1	120	86	0	364	22	24	11	41	1.87
35843907--35844101	30	6.5	30	76	4	142	24	25	10	39	1.87
35843790--35844074	59	4.8	59	76	8	265	21	25	11	41	1.86
35847793--35847844	26	2.0	26	96	0	95	23	17	11	48	1.79
35848623--35848654	15	2.1	15	94	0	55	15	6	9	68	1.36
35854518--35854652	43	3.3	43	75	8	127	27	31	16	22	1.95
35859535--35859592	19	3.1	17	79	18	62	56	0	6	36	1.26
35860768--35860797	15	2.0	15	93	0	51	40	36	0	23	1.55
35860770--35860832	21	3.0	20	77	9	63	39	36	0	23	1.55
35860842--35860879	7	5.4	7	93	0	58	44	34	0	21	1.52
35860950--35861014	14	4.5	14	75	11	60	38	36	1	23	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35861663--35861801	41	3.3	41	88	2	188	28	27	22	21	1.99
35861873--35861949	40	1.9	40	86	0	109	18	22	25	33	1.96
35863892--35863933	22	1.9	22	90	9	68	57	2	4	35	1.33
35865040--35865169	49	2.7	49	73	4	118	36	16	20	26	1.94
35881206--35881247	15	2.9	15	85	3	59	45	9	9	35	1.69
35882193--35882328	43	3.1	44	84	3	175	30	20	24	24	1.98
35884231--35884265	17	2.1	17	94	0	61	37	14	22	25	1.92
35891969--35892000	16	1.9	17	93	6	57	34	0	21	43	1.53
35895288--35895437	42	3.6	41	79	7	149	23	15	24	36	1.93
35895327--35895441	43	2.7	42	80	11	137	22	16	24	36	1.94
35903237--35903290	27	2.0	27	100	0	108	14	40	3	40	1.64
35915983--35916183	51	4.0	51	76	8	203	28	29	16	24	1.97
35915991--35916175	101	1.8	102	85	3	266	29	29	17	23	1.97
35915985--35916209	101	2.2	102	79	5	242	28	29	16	24	1.97
35916401--35916431	16	1.9	16	93	0	53	45	9	9	35	1.70
35918650--35918696	20	2.4	20	89	3	69	55	4	21	19	1.60
35922202--35922260	16	3.6	16	82	13	75	32	1	3	62	1.21
35922776--35922818	11	3.8	11	82	11	52	27	2	2	67	1.15
35923853--35923987	27	5.0	27	80	2	148	22	17	19	41	1.90
35923870--35923989	27	4.4	28	83	4	149	21	15	21	40	1.90
35923844--35924009	81	2.1	80	82	5	201	23	16	21	37	1.93
35925836--35925985	40	3.7	41	75	11	128	29	18	22	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35931855--35931884	15	2.0	15	93	0	51	56	6	3	33	1.42
35933412--35933452	20	2.0	20	85	4	55	29	9	12	48	1.72
35933397--35933464	35	1.9	35	88	5	102	33	8	11	45	1.72
35936257--35936292	18	2.0	18	88	0	54	47	0	44	8	1.33
35937509--35937803	50	5.8	50	81	5	292	27	21	29	22	1.99
35937509--35937708	98	2.0	102	84	7	264	26	23	31	19	1.98
35944947--35944979	16	2.1	16	100	0	66	57	18	0	24	1.40
35945716--35945748	3	11.0	3	100	0	66	66	0	0	33	0.92
35946492--35946516	3	8.3	3	100	0	50	68	0	32	0	0.90
35946830--35946893	3	21.3	3	93	0	110	1	1	31	65	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144