genome.fa.s11.2.7.7.80.10.50.1000.32.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  32  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9695179--9695272	19	4.7	19	71	10	64	50	3	2	44	1.30
9695969--9696008	20	2.0	20	90	0	62	27	10	12	50	1.72
9695954--9696020	34	1.9	35	84	3	91	34	8	10	46	1.70
9702122--9702178	20	3.1	19	76	16	50	36	1	0	61	1.07
9702134--9702178	23	1.9	24	86	13	67	35	0	0	64	0.94
9706290--9706347	25	2.4	24	82	2	62	24	29	12	34	1.91
9706408--9706505	50	1.9	53	83	10	132	25	21	20	32	1.97
9706436--9706505	25	2.6	27	75	6	72	25	22	20	31	1.98
9711638--9711668	3	10.3	3	100	0	62	67	0	0	32	0.91
9716079--9716132	26	2.1	26	100	0	108	42	3	25	27	1.72
9731878--9731925	24	2.0	25	83	4	62	22	0	6	70	1.09
9732715--9732755	21	2.0	21	85	0	55	12	29	0	58	1.34
9742366--9742413	21	2.2	22	81	3	62	54	4	0	41	1.20
9742381--9742426	21	2.1	22	84	11	60	54	6	0	39	1.26
9743214--9743390	86	2.1	86	94	0	309	25	14	14	45	1.83
9744961--9745004	21	2.0	22	83	12	56	15	13	4	65	1.41
9749275--9749336	32	2.0	32	84	6	83	41	3	11	43	1.56
9749884--9749932	23	2.1	23	81	7	55	55	2	4	38	1.31
9750881--9751137	125	2.1	124	90	1	397	29	14	22	33	1.94
9754080--9754327	29	8.7	29	75	12	167	33	2	23	41	1.66
9754081--9754461	51	7.0	58	78	12	208	32	1	23	42	1.64
9754216--9754453	23	9.4	23	75	17	197	31	0	21	45	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9754226--9754427	28	7.5	28	77	14	185	32	0	20	45	1.58
9754216--9754453	51	4.6	51	81	8	270	31	0	21	45	1.58
9754135--9754470	29	12.6	27	72	16	157	31	1	22	44	1.62
9754127--9754470	80	4.3	81	79	12	327	31	1	23	43	1.63
9756313--9756346	15	2.3	15	90	5	52	67	5	0	26	1.13
9756739--9756780	17	2.4	18	80	11	52	30	2	0	66	1.04
9759633--9759700	33	2.1	33	91	0	109	55	1	5	36	1.33
9760304--9760428	47	2.7	48	88	7	195	43	14	10	32	1.79
9760326--9760488	69	2.3	69	92	3	263	41	15	10	32	1.81
9760305--9760488	22	8.0	22	76	11	165	42	14	10	32	1.79
9760740--9760774	15	2.3	15	90	9	54	51	22	0	25	1.48
9761521--9761551	12	2.6	12	89	0	53	54	3	0	41	1.16
9768217--9768241	7	3.6	7	100	0	50	84	16	0	0	0.63
9778887--9778934	18	2.7	18	80	0	60	35	10	16	37	1.83
9786496--9786544	22	2.3	21	85	3	62	24	0	10	65	1.23
9786505--9786550	22	2.1	22	92	8	76	21	0	8	69	1.15
9788815--9788841	8	3.4	8	100	0	54	48	14	0	37	1.45
9789075--9789143	21	3.4	21	88	4	97	42	17	23	17	1.89
9789089--9789157	21	3.3	21	87	0	93	43	17	23	15	1.87
9792294--9792328	17	2.1	17	88	0	52	28	5	20	45	1.73
9794742--9794933	51	3.8	51	79	4	201	28	26	19	25	1.99
9794749--9794933	101	1.8	101	89	3	291	29	26	18	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9797805--9797866	32	1.9	32	83	6	81	53	4	3	38	1.39
9815307--9815341	17	2.1	17	89	10	54	48	8	8	34	1.64
9829810--9829856	18	2.6	18	82	3	58	23	2	0	74	0.93
9830197--9830238	12	3.1	14	77	19	52	35	9	2	52	1.47
9834145--9834228	15	5.6	15	69	10	73	46	7	19	27	1.75
9834141--9834250	30	3.7	30	90	2	159	47	6	20	25	1.74
9838843--9838927	15	5.6	15	68	12	66	45	7	20	27	1.76
9838836--9838922	30	2.9	30	92	0	138	48	6	19	25	1.74
9838877--9838927	14	3.5	14	70	19	50	43	5	23	27	1.77
9843590--9843623	17	2.0	17	88	0	50	58	2	0	38	1.13
9846531--9846574	22	2.0	22	86	4	63	29	2	6	61	1.34
9854879--9854915	15	2.6	14	91	8	65	32	0	0	67	0.91
9863902--9864014	19	5.8	19	90	4	172	38	9	15	36	1.80
9863903--9864014	59	1.9	59	92	0	188	39	9	14	36	1.79
9863902--9864021	40	3.2	40	90	6	180	39	9	15	36	1.79
9864759--9864808	25	2.0	26	88	4	75	32	8	4	56	1.47
9865479--9865673	98	2.0	98	95	0	354	26	10	26	36	1.89
9868241--9868305	30	2.2	30	94	0	112	58	16	4	20	1.56
9870829--9870867	16	2.5	16	87	4	53	46	10	5	38	1.60
9873671--9874067	109	3.7	109	92	1	645	30	14	19	35	1.91
9874583--9874644	31	2.0	31	87	0	88	27	14	6	51	1.66
9879367--9879399	13	2.6	13	95	4	59	60	0	6	33	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9885935--9885960	2	13.0	2	100	0	52	50	0	0	50	1.00
9890279--9890338	24	2.3	28	81	16	76	13	10	0	76	1.01
9891392--9891432	21	2.0	21	85	0	55	78	0	19	2	0.87
9892595--9892628	16	2.1	16	94	0	59	23	0	2	73	0.97
9892894--9892924	6	5.2	6	100	0	62	83	0	0	16	0.64
9892988--9893038	23	2.3	22	83	10	59	60	1	7	29	1.36
9894061--9894087	3	9.0	3	100	0	54	0	66	0	33	0.92
9894121--9894145	3	8.3	3	100	0	50	0	36	0	64	0.94
9898668--9898733	10	6.9	9	75	20	55	33	1	1	63	1.13
9898697--9898733	18	2.1	18	94	0	65	35	0	2	62	1.10
9901965--9902003	21	2.0	21	90	10	64	0	23	0	76	0.78
9902439--9902474	18	2.1	17	89	5	54	25	8	2	63	1.36
9907292--9907317	12	2.2	12	100	0	52	15	0	7	76	0.99
9909737--9909777	7	5.9	7	97	0	73	2	56	0	41	1.13
9912118--9912202	35	2.5	33	79	9	98	40	0	1	58	1.05
9912115--9912214	8	11.8	8	71	11	58	39	0	1	60	1.04
9913818--9913858	7	5.9	7	97	0	73	2	56	0	41	1.13
9916199--9916283	35	2.5	33	79	9	98	40	0	1	58	1.05
9916196--9916295	8	11.8	8	71	11	58	39	0	1	60	1.04
9921447--9921507	11	5.4	11	79	13	52	80	8	6	4	1.02
9921447--9921507	23	2.7	22	80	5	59	80	8	6	4	1.02
9923007--9923280	44	6.2	44	75	11	199	31	14	24	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9923005--9923280	88	3.1	86	75	10	229	31	14	24	29	1.94
9923009--9923280	132	2.1	132	90	2	422	31	14	24	29	1.95
9923339--9923525	100	1.9	100	91	0	311	32	21	20	26	1.98
9923340--9923553	100	2.1	100	87	3	306	32	21	21	25	1.98
9923340--9923553	50	4.3	50	68	2	160	32	21	21	25	1.98
9923611--9924018	40	9.8	39	77	12	341	34	22	20	23	1.97
9923609--9924040	84	5.1	83	83	9	445	34	22	19	22	1.96
9923609--9924017	126	3.3	127	89	3	605	34	22	20	22	1.96
9927698--9927745	21	2.5	19	83	12	55	56	0	0	43	0.99
9938467--9938494	9	3.1	9	100	0	56	46	21	10	21	1.81
9939390--9939423	17	2.0	17	88	11	52	47	8	5	38	1.59
9950369--9950421	27	2.0	27	96	0	97	35	26	7	30	1.84
9950612--9950725	41	2.8	41	89	1	174	26	28	21	24	1.99
9968258--9968307	26	1.9	26	95	0	91	30	18	20	32	1.96
9982220--9982249	15	1.9	16	93	6	53	53	0	0	46	1.00
9982762--9982802	19	2.0	20	86	9	57	63	0	0	36	0.95
9987715--9987752	19	2.0	19	89	0	58	39	0	7	52	1.31
9987715--9987773	19	3.0	20	76	11	52	35	0	10	54	1.34
9987721--9987776	20	2.8	20	83	2	69	32	0	12	55	1.37
9987721--9987778	19	3.0	19	80	5	62	31	0	12	56	1.35
9989787--9989874	25	3.6	25	70	1	70	26	20	21	31	1.98
9990024--9990082	16	3.4	16	78	17	73	32	8	20	38	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9990006--9990082	36	2.2	36	95	2	138	33	9	16	40	1.81
9990006--9990070	20	3.5	20	76	18	77	33	9	15	41	1.79
9993115--9993157	14	2.8	16	82	13	63	62	0	0	37	0.95
9995082--9995106	8	3.1	8	100	0	50	76	0	0	24	0.80
9996173--9996231	31	1.9	31	92	0	100	37	10	8	44	1.69
10001448--10001536	39	2.3	38	81	13	92	48	5	3	42	1.43
10018007--10018041	15	2.2	16	90	5	54	25	5	0	68	1.11
10019203--10019227	6	4.2	6	100	0	50	0	20	16	64	1.30
10021668--10021713	23	2.0	23	87	4	67	63	2	0	34	1.07
10022733--10022772	20	2.1	19	90	4	62	45	27	2	25	1.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144