genome.fa.s11.2.7.7.80.10.50.1000.40.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  40  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12087594--12087660	22	3.0	22	82	0	89	38	19	25	16	1.92
12087588--12087718	25	5.5	24	81	7	108	40	19	21	18	1.92
12091196--12091229	5	7.0	5	93	6	61	38	0	0	61	0.96
12091371--12091414	20	2.2	21	92	8	74	54	6	6	31	1.53
12101077--12101172	42	2.3	42	87	0	147	21	25	13	39	1.90
12104972--12105049	40	2.0	40	84	5	104	55	0	0	44	0.99
12106377--12106401	12	2.1	12	100	0	50	44	0	16	40	1.47
12108686--12108741	9	6.3	9	76	12	53	67	8	23	0	1.18
12109981--12110042	25	2.4	25	97	2	115	58	0	3	38	1.15
12126039--12126085	17	2.7	18	77	9	53	51	0	8	40	1.33
12132908--12132960	26	2.1	25	86	6	72	69	0	7	22	1.13
12133356--12133397	21	2.0	21	95	0	75	42	2	9	45	1.49
12144202--12144378	31	5.7	31	85	4	216	45	15	8	30	1.76
12144208--12144398	62	3.1	61	80	4	204	45	15	7	31	1.74
12145963--12146113	76	2.0	76	94	0	266	25	33	15	25	1.95
12156191--12156246	14	3.9	14	84	9	60	16	1	7	75	1.11
12156210--12156246	7	5.3	7	90	0	56	13	2	10	72	1.21
12158804--12158856	17	3.1	17	83	0	70	26	20	3	49	1.66
12168478--12168514	17	2.2	17	90	0	56	24	21	8	45	1.78
12169372--12169453	32	2.6	32	80	3	103	41	24	17	17	1.89
12169622--12169703	24	3.4	24	84	0	101	47	21	7	23	1.75
12169641--12169733	24	3.9	24	87	5	109	43	25	8	22	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12169749--12169977	54	4.2	52	74	14	169	21	16	20	41	1.90
12169847--12169963	55	2.1	54	82	1	144	21	12	21	44	1.85
12169763--12170056	27	10.9	27	74	7	141	21	14	21	42	1.88
12169925--12170079	81	1.9	81	85	7	217	21	12	21	43	1.86
12169833--12170079	27	9.1	27	78	7	166	21	14	21	43	1.87
12176632--12176697	31	2.1	31	91	0	105	24	10	4	60	1.48
12179976--12180022	21	2.3	21	85	7	62	40	10	12	36	1.78
12184872--12184898	2	13.5	2	100	0	54	0	48	0	51	1.00
12195460--12195496	15	2.5	15	95	0	65	21	2	29	45	1.65
12198919--12198963	24	1.9	24	86	4	65	37	20	15	26	1.92
12199727--12199771	17	2.6	17	76	13	56	40	0	0	60	0.97
12201018--12201187	87	2.0	86	83	5	218	37	18	7	35	1.80
12201214--12201247	18	1.9	18	88	5	52	58	0	0	41	0.98
12201434--12201493	28	2.1	28	81	6	68	26	3	1	68	1.15
12201502--12201547	20	2.3	20	85	7	58	43	0	2	54	1.12
12206522--12206569	20	2.4	20	86	6	62	43	0	2	54	1.12
12206519--12206569	10	5.1	10	74	9	50	43	0	1	54	1.11
12209927--12209962	2	18.0	2	100	0	72	0	50	0	50	1.00
12209981--12210015	15	2.3	15	90	0	52	45	8	8	37	1.65
12209962--12209987	2	13.0	2	100	0	52	50	0	0	50	1.00
12212601--12212640	21	1.9	21	94	0	71	22	10	10	57	1.61
12216189--12216223	13	2.5	14	90	9	54	20	5	22	51	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12221491--12221516	9	2.9	9	100	0	52	69	0	7	23	1.14
12226802--12226986	101	1.8	102	89	3	293	24	18	26	30	1.98
12226802--12226984	51	3.6	50	82	5	208	24	18	26	30	1.98
12226908--12226988	26	3.2	26	61	22	62	24	14	27	33	1.95
12237497--12237535	20	1.9	20	84	5	51	17	5	20	56	1.60
12238866--12238904	20	1.9	20	84	5	51	7	15	0	76	0.99
12239850--12239899	26	2.0	25	84	4	64	32	10	2	56	1.44
12242297--12242342	19	2.4	19	85	7	58	23	19	10	45	1.82
12245047--12245083	17	2.1	18	95	5	67	81	0	18	0	0.70
12245042--12245084	13	3.4	12	84	15	52	81	0	16	2	0.79
12245872--12245905	15	2.3	15	95	5	61	82	0	5	11	0.83
12247325--12248327	44	22.8	43	64	13	292	32	18	23	25	1.97
12247324--12248348	132	7.8	132	92	1	1653	32	19	23	25	1.97
12248726--12248835	55	2.0	55	96	0	202	25	38	16	20	1.92
12249109--12249147	20	1.9	20	89	5	60	7	17	0	74	1.05
12250039--12250659	305	2.0	306	99	0	1217	34	12	3	48	1.59
12262165--12262529	183	2.0	183	90	1	579	38	26	15	19	1.92
12267668--12267693	9	2.9	9	100	0	52	69	0	7	23	1.14
12268679--12268719	13	3.2	13	79	6	57	24	41	0	34	1.55
12268670--12268719	25	2.0	25	96	0	91	22	42	0	36	1.54
12273034--12273211	51	3.5	51	85	3	227	24	17	27	30	1.97
12273135--12273215	26	3.2	26	61	22	62	24	14	27	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12283724--12283762	20	1.9	20	84	5	51	17	5	20	56	1.60
12285249--12285515	132	2.0	132	89	2	412	32	17	23	26	1.97
12284912--12285645	397	1.8	397	97	0	1387	34	18	23	24	1.96
12285841--12286119	141	2.0	140	96	0	513	27	39	12	20	1.88
12286193--12286338	75	1.9	75	98	0	283	50	11	19	18	1.77
12286417--12286455	20	1.9	20	84	5	51	7	15	0	76	0.99
12286642--12286680	20	1.9	20	89	5	60	7	17	0	74	1.05
12286407--12286855	225	2.0	225	96	0	828	23	20	13	41	1.88
12286937--12287201	133	2.0	133	96	0	485	24	23	26	26	2.00
12287147--12287256	55	2.0	55	94	0	193	19	20	33	27	1.96
12287803--12287859	22	2.6	22	77	0	60	38	8	1	50	1.44
12287821--12287870	26	2.0	25	84	4	64	32	10	2	56	1.44
12290269--12290314	19	2.4	19	85	7	58	23	19	10	45	1.82
12293019--12293055	17	2.1	18	95	5	67	81	0	18	0	0.70
12293014--12293056	13	3.4	12	84	15	52	81	0	16	2	0.79
12293844--12293877	15	2.3	15	95	5	61	82	0	5	11	0.83
12296868--12296906	20	1.9	20	89	5	60	7	17	0	74	1.05
12297827--12297876	26	2.0	25	84	4	64	32	10	2	56	1.44
12312832--12312856	13	1.9	13	100	0	50	68	24	0	8	1.16
12312959--12313064	53	2.0	53	100	0	212	32	11	16	39	1.85
12316553--12316825	137	2.0	135	97	1	519	25	16	16	41	1.89
12320077--12320357	139	2.0	139	98	0	544	29	18	13	38	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12325144--12325185	22	1.9	22	85	9	59	42	0	2	54	1.13
12351273--12351367	42	2.3	42	79	0	109	13	25	18	42	1.87
12351294--12351344	21	2.4	21	74	6	50	13	29	19	37	1.90
12355436--12355486	20	2.4	21	75	12	52	41	5	1	50	1.37
12360540--12360601	32	1.9	33	86	3	90	50	1	3	45	1.27
12360775--12360825	26	1.9	27	84	4	68	54	7	9	27	1.60
12363779--12363820	17	2.3	18	88	12	68	47	9	4	38	1.57
12363787--12363822	17	2.1	17	100	0	72	47	13	5	33	1.67
12364587--12364628	2	21.0	2	100	0	84	0	50	0	50	1.00
12371017--12371438	210	2.0	210	100	0	844	23	13	17	45	1.84
12374636--12374674	6	6.5	6	88	11	62	17	33	17	30	1.94
12379250--12379291	21	2.0	21	100	0	84	42	14	14	28	1.84
12399971--12400021	23	2.2	23	82	0	66	45	11	17	25	1.83
12402056--12402082	12	2.2	12	100	0	54	7	40	0	51	1.30
12404942--12404987	23	2.0	23	86	4	65	50	0	0	50	1.00
12404930--12404983	28	1.9	28	81	7	65	50	0	1	48	1.11
12405002--12405038	19	2.0	19	89	5	58	32	0	21	45	1.52
12406971--12407115	25	5.9	25	73	15	108	16	24	22	35	1.95
12406980--12407133	49	3.1	49	82	5	150	18	24	22	34	1.96
12407022--12407133	24	4.6	25	72	21	78	18	25	23	33	1.97
12411045--12411121	37	2.1	38	85	2	102	33	25	18	22	1.96
12411257--12411300	16	2.6	16	82	7	52	40	15	2	40	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12412091--12412151	13	4.7	13	75	18	56	19	8	0	72	1.10
12412106--12412172	22	3.0	21	79	20	66	28	5	0	65	1.16
12412128--12412179	24	2.1	25	85	3	70	34	3	0	61	1.14
12414359--12414415	30	1.9	30	85	7	80	45	7	0	47	1.30
12415496--12415526	6	5.2	6	92	0	53	16	35	16	32	1.91
12419148--12419188	20	2.0	20	85	0	55	39	19	17	24	1.92
12419295--12419384	10	9.0	9	71	21	56	53	0	4	42	1.21
12419295--12419384	21	4.4	20	74	14	78	53	0	4	42	1.21
12419340--12419390	18	2.8	18	82	5	59	58	0	5	35	1.22
12419340--12419385	19	2.4	18	85	7	56	58	0	4	36	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144