genome.fa.s11.2.7.7.80.10.50.1000.45.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  45  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13922136--13922174	17	2.2	17	86	9	51	17	7	2	71	1.21
13926638--13926696	23	2.5	24	81	10	68	74	1	5	18	1.09
13926638--13926696	6	9.8	6	83	10	50	74	1	5	18	1.09
13935157--13935181	5	5.0	5	100	0	50	0	80	0	20	0.72
13941001--13941189	92	2.1	92	87	0	270	42	14	11	31	1.81
13944113--13944209	42	2.3	42	92	0	158	39	9	25	25	1.86
13947659--13947704	19	2.4	19	96	0	83	30	19	32	17	1.95
13958674--13958708	13	2.6	13	86	4	52	31	2	17	48	1.61
13968707--13968852	73	2.0	73	98	0	283	24	14	28	32	1.94
13975663--13975697	18	1.9	18	88	0	52	40	5	5	48	1.51
13977750--13977776	7	3.9	7	100	0	54	0	0	11	88	0.50
13980180--13980324	42	3.5	41	82	8	177	40	20	17	21	1.91
13980324--13980440	43	2.8	42	88	2	180	23	21	20	35	1.96
13986202--13986292	39	2.2	40	77	13	96	29	25	16	28	1.97
13986446--13986555	31	3.6	32	73	11	104	49	16	8	26	1.73
13986513--13986576	31	2.1	31	82	5	76	45	17	7	29	1.76
13986493--13986729	93	2.5	93	83	6	266	45	16	6	32	1.72
13986568--13986729	31	5.2	30	69	12	96	44	16	5	33	1.71
13986562--13986781	92	2.4	93	87	3	311	43	15	6	34	1.74
13989208--13989339	54	2.4	54	78	2	140	27	19	29	23	1.98
13994118--13994176	29	2.0	30	86	3	84	50	15	8	25	1.71
13994611--13994689	31	2.6	31	86	6	99	37	11	10	40	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14018710--14019418	353	2.0	353	94	0	1256	30	21	10	37	1.88
14027718--14027790	36	2.0	36	91	0	119	32	9	16	41	1.81
14028015--14028110	48	2.0	48	85	0	129	20	15	20	42	1.89
14035371--14035432	31	2.0	31	96	0	115	32	8	12	46	1.71
14046858--14046891	17	1.9	18	88	5	52	38	0	14	47	1.45
14049591--14049669	25	3.2	25	85	8	83	17	26	22	32	1.96
14049600--14049669	25	2.8	25	87	6	90	17	27	24	31	1.97
14049617--14049700	24	3.4	23	76	11	69	19	26	21	33	1.97
14049707--14049761	25	2.2	25	77	6	58	21	25	20	32	1.97
14052414--14052454	20	2.1	20	86	4	57	53	2	2	41	1.27
14052457--14052530	10	7.5	10	77	11	73	59	1	1	37	1.14
14052486--14052542	20	2.9	18	82	14	69	57	1	0	40	1.09
14052486--14052552	20	3.6	18	81	15	64	58	2	1	37	1.23
14053177--14053215	19	2.1	19	85	0	51	48	10	2	38	1.51
14054853--14054906	27	2.0	27	88	0	81	25	16	12	44	1.84
14054986--14055202	70	3.2	69	80	11	191	25	25	17	32	1.97
14054986--14055202	69	3.2	67	79	11	185	25	25	17	32	1.97
14055042--14055202	69	2.3	67	84	8	191	25	27	16	31	1.96
14055010--14055202	70	2.8	70	81	9	193	24	25	18	31	1.97
14066650--14066698	25	2.0	25	91	0	80	36	8	18	36	1.81
14067092--14067142	20	2.5	20	75	12	52	60	11	0	27	1.31
14073502--14073542	21	2.0	21	90	0	64	29	21	29	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14075448--14075481	16	2.1	16	88	0	50	50	14	17	17	1.79
14080205--14080297	29	3.2	29	81	3	107	39	5	26	27	1.78
14103365--14103407	6	7.2	6	100	0	86	16	51	16	16	1.77
14104017--14104077	29	2.1	29	100	0	122	47	9	22	19	1.79
14106110--14106332	107	2.1	107	86	1	304	27	24	18	30	1.98
14107568--14107610	18	2.4	18	88	0	59	41	44	2	11	1.53
14107719--14107757	9	4.4	9	96	3	71	25	7	20	46	1.77
14109295--14109330	18	2.1	16	90	10	54	61	0	5	33	1.19
14112390--14112479	43	2.1	43	95	0	162	24	24	14	36	1.93
14125294--14125404	46	2.4	46	90	1	170	28	21	17	32	1.96
14125367--14125579	37	5.8	37	97	0	390	25	20	14	39	1.90
14135637--14136556	50	18.8	49	74	8	448	31	23	21	24	1.98
14135732--14136400	95	6.9	95	89	4	722	31	22	21	24	1.98
14138377--14138406	3	10.3	3	92	7	53	63	0	0	36	0.95
14138479--14138503	6	4.2	6	100	0	50	16	0	16	68	1.22
14143937--14143965	2	14.5	2	100	0	58	0	0	48	51	1.00
14145314--14145372	29	2.0	30	83	9	77	49	13	8	28	1.71
14146675--14146911	50	4.7	50	80	1	276	27	23	29	19	1.98
14146680--14146911	101	2.3	101	100	0	464	27	24	28	20	1.99
14152596--14152742	33	4.4	32	66	12	89	31	14	23	30	1.94
14152529--14152768	101	2.4	101	90	0	372	32	14	23	29	1.94
14163207--14163262	29	1.9	29	96	0	103	30	3	0	66	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14170336--14170373	13	2.9	13	100	0	76	31	7	21	39	1.82
14174697--14174785	32	2.8	32	73	8	83	46	5	3	44	1.43
14174689--14174784	21	4.6	20	69	20	63	45	6	3	44	1.44
14177743--14177797	30	1.9	27	85	10	74	63	5	0	30	1.17
14181802--14181975	24	7.1	25	70	14	80	17	25	20	36	1.94
14181933--14181985	24	2.2	24	83	6	63	20	22	24	32	1.98
14183202--14183240	13	2.9	13	88	3	51	17	41	28	12	1.87
14188202--14188252	25	2.0	25	92	0	84	54	1	27	15	1.52
14192772--14192859	38	2.3	38	92	0	149	35	37	10	17	1.83
14202000--14202036	2	18.5	2	100	0	74	0	51	0	48	1.00
14203422--14203577	52	3.0	52	95	0	276	38	16	7	38	1.75
14203988--14204023	18	2.0	18	88	0	54	52	0	2	44	1.15
14204284--14204319	15	2.4	15	90	0	54	52	0	16	30	1.44
14205237--14205261	8	3.1	8	100	0	50	24	40	12	24	1.88
14208142--14208195	18	3.0	18	76	12	58	44	0	0	55	0.99
14208280--14208327	21	2.6	18	80	12	53	33	8	0	58	1.28
14208280--14208328	18	2.5	21	83	9	59	32	8	0	59	1.27
14215648--14215693	21	2.2	22	80	11	60	76	4	10	8	1.15
14215659--14215711	21	2.4	22	87	6	72	69	3	16	9	1.30
14215747--14215775	11	2.7	11	94	5	51	86	0	6	6	0.72
14215744--14215780	15	2.4	16	82	13	51	81	0	13	5	0.86
14227763--14227791	10	2.9	10	100	0	58	0	41	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14231771--14231810	14	2.9	14	84	0	53	32	7	17	42	1.77
14231794--14231833	20	2.0	20	90	0	62	27	10	12	50	1.72
14231779--14231845	34	1.9	35	90	3	109	31	8	13	46	1.74
14234012--14234062	18	2.8	18	75	0	66	39	3	43	13	1.63
14240348--14240524	57	3.1	56	82	6	212	27	18	6	47	1.72
14241782--14241884	45	2.3	45	96	1	188	36	14	19	29	1.91
14243369--14243415	22	2.1	23	84	4	60	44	8	0	46	1.33
14243799--14243852	15	3.3	15	74	18	54	44	0	1	53	1.11
14244083--14244123	19	2.2	19	91	4	66	48	9	14	26	1.75
14252098--14252389	101	2.9	101	96	0	530	44	16	14	23	1.85
14268870--14269060	36	5.0	36	81	12	229	29	19	13	37	1.90
14268827--14269024	82	2.5	81	91	2	310	29	20	13	35	1.91
14268870--14269096	118	1.9	118	97	0	427	29	20	12	37	1.89
14281678--14281739	27	2.4	27	84	10	76	64	0	3	32	1.09
14281681--14281746	28	2.4	27	85	9	89	63	0	4	31	1.14
14282945--14283069	40	3.1	41	90	4	200	36	2	0	61	1.09
14282945--14283069	41	3.1	40	91	2	196	36	2	0	61	1.09
14282953--14283054	11	9.9	11	67	23	53	38	2	0	58	1.13
14296702--14297028	123	2.7	123	91	1	530	31	17	20	31	1.95
14299502--14299558	28	2.0	28	96	0	105	21	22	36	19	1.95
14300061--14300384	24	12.9	24	74	15	262	24	0	30	44	1.58
14300065--14300661	30	20.1	30	73	22	400	24	0	30	44	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14300063--14300137	18	4.1	18	70	19	66	20	0	36	44	1.52
14300142--14300178	18	2.0	20	89	10	60	27	0	27	45	1.54
14300170--14300620	36	13.1	36	73	22	359	24	0	31	44	1.58
14300370--14300429	6	10.0	6	78	7	50	21	0	40	38	1.54
14300322--14300620	96	3.0	95	90	7	424	24	0	32	43	1.54
14300418--14300480	24	2.6	25	87	5	94	22	0	31	46	1.52
14300514--14300576	18	3.5	18	72	8	65	28	0	26	44	1.55
14300593--14300657	24	2.7	24	100	0	130	26	0	26	47	1.52
14302980--14303018	1	39.0	1	94	0	69	0	0	2	97	0.17
14314734--14314803	29	2.4	29	87	0	95	24	21	27	27	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144