genome.fa.s11.2.7.7.80.10.50.1000.23.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  23  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6978747--6978798	18	2.8	18	79	2	59	63	5	0	30	1.18
6988845--6988956	58	1.9	58	87	1	163	50	8	12	28	1.70
6994349--6994390	15	2.9	15	82	10	52	52	0	0	47	1.00
6994648--6994700	27	2.1	27	82	10	67	43	0	0	56	0.99
6997525--6997549	13	1.9	13	100	0	50	52	8	32	8	1.60
6997619--6997676	10	5.8	10	100	0	116	70	0	0	29	0.87
6998516--6998545	2	15.0	2	100	0	60	50	0	50	0	1.00
6999272--6999316	21	2.1	21	84	12	56	33	15	8	42	1.78
7005472--7005539	27	2.5	26	84	13	77	20	25	33	20	1.97
7005587--7005784	4	48.0	4	73	18	67	70	0	28	1	0.94
7005605--7005667	24	2.6	24	94	2	108	61	0	36	1	1.05
7005654--7005784	44	3.2	39	81	12	140	74	0	24	1	0.91
7005586--7005784	48	4.5	42	76	14	156	69	0	29	1	0.95
7005629--7005755	34	3.6	33	84	12	141	70	0	28	1	0.97
7005639--7005770	38	3.6	35	76	15	117	70	0	28	1	0.96
7006288--7006798	162	3.2	161	71	17	500	50	9	9	29	1.67
7006111--7006887	319	2.4	319	93	0	1295	50	9	10	29	1.67
7008891--7008917	14	1.9	14	100	0	54	37	7	0	55	1.28
7012340--7012379	10	3.8	11	90	9	66	0	25	0	75	0.81
7012466--7012557	27	3.4	27	86	3	114	23	33	22	19	1.97
7018098--7018154	23	2.5	23	97	0	105	33	31	24	10	1.89
7022033--7022110	28	3.0	27	75	16	74	65	1	0	33	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7022033--7022101	27	2.6	28	76	15	74	62	1	0	36	1.04
7022033--7022104	17	4.1	17	71	13	56	63	1	0	34	1.03
7027221--7027269	24	2.0	24	96	0	89	34	10	20	34	1.86
7027459--7027502	20	2.2	20	87	0	61	34	2	13	50	1.55
7027580--7027664	41	2.1	40	89	6	127	47	4	12	35	1.63
7027580--7027676	41	2.4	41	86	5	117	44	4	15	36	1.66
7027589--7027667	20	3.9	20	78	15	90	45	3	15	35	1.64
7027800--7027852	20	2.7	20	78	0	61	35	3	20	39	1.71
7027980--7028023	20	2.2	20	88	4	63	34	0	20	45	1.51
7028055--7028180	20	6.2	20	72	9	78	37	6	18	38	1.76
7028253--7028347	20	4.8	20	77	5	93	33	5	18	42	1.73
7028253--7028367	40	2.9	40	84	0	122	33	6	17	41	1.76
7028276--7028383	40	2.7	39	78	8	101	36	5	16	41	1.72
7028451--7028493	19	2.2	19	83	4	50	44	4	13	37	1.65
7028451--7028538	20	4.5	19	72	16	63	42	5	14	37	1.70
7030197--7030252	21	2.7	20	83	8	76	55	0	12	32	1.37
7030205--7030283	28	2.8	28	74	16	90	51	0	17	30	1.46
7030176--7030249	35	2.1	36	82	12	91	55	0	13	31	1.39
7034988--7035012	12	2.1	12	100	0	50	24	16	0	60	1.36
7040646--7040683	14	2.8	14	88	4	51	42	5	0	52	1.24
7040649--7040690	12	3.2	13	86	6	50	38	4	0	57	1.20
7041849--7041899	26	2.0	26	96	0	93	33	7	17	41	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7048682--7048717	8	4.4	8	89	6	54	55	0	0	44	0.99
7050498--7050565	26	2.7	26	79	2	84	17	27	20	33	1.95
7050532--7050672	73	1.9	73	80	5	160	20	25	20	33	1.97
7070787--7070862	38	2.0	38	100	0	152	36	26	18	18	1.94
7080612--7080665	27	2.0	27	96	0	99	29	22	9	38	1.85
7086172--7086222	13	3.8	13	75	25	52	37	1	0	60	1.08
7086172--7086247	28	2.7	27	80	17	75	35	2	2	59	1.25
7093839--7093921	31	2.7	31	96	0	148	51	14	8	25	1.70
7094130--7094163	15	2.3	15	100	0	68	41	20	11	26	1.87
7097723--7097764	21	1.9	21	90	9	66	26	7	2	64	1.32
7102293--7102330	18	2.1	19	85	5	51	57	7	7	26	1.54
7107232--7107329	23	4.3	23	90	2	162	31	26	21	20	1.98
7107239--7107327	45	2.0	45	95	0	160	31	26	22	19	1.97
7108968--7109027	29	2.1	29	93	0	102	33	11	33	21	1.90
7120815--7120927	52	2.2	51	85	4	147	44	6	13	36	1.69
7121091--7121115	13	1.9	13	100	0	50	32	0	0	68	0.90
7121068--7121168	51	2.0	51	88	5	150	28	3	3	63	1.30
7122428--7122465	7	5.4	7	100	0	76	57	0	13	28	1.36
7122637--7122669	13	2.5	13	90	9	50	78	0	9	12	0.95
7125324--7126104	393	2.0	393	100	0	1562	29	23	15	31	1.95
7127270--7127468	98	2.0	100	90	3	314	45	8	23	23	1.80
7132595--7132801	46	4.6	46	93	3	341	34	15	22	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7132595--7132801	91	2.3	91	95	1	373	34	15	22	28	1.94
7133039--7133207	86	2.0	86	93	0	293	36	6	20	36	1.79
7133901--7134014	21	5.4	21	82	0	138	42	16	25	15	1.88
7135801--7135848	16	2.9	16	84	9	62	50	14	0	35	1.44
7141000--7141044	22	2.0	22	100	0	90	57	17	8	15	1.63
7151668--7151743	26	2.9	25	81	13	82	36	19	7	35	1.81
7151669--7151743	9	8.4	9	82	2	80	36	20	8	36	1.82
7151743--7151852	37	3.0	37	90	0	175	46	14	4	34	1.65
7152001--7152072	26	2.8	26	100	0	144	44	15	18	22	1.86
7152122--7152166	7	6.3	7	84	5	63	57	13	13	15	1.65
7152120--7152166	15	3.2	15	81	6	69	57	12	14	14	1.66
7154667--7154719	22	2.5	21	80	14	65	45	0	1	52	1.11
7158851--7159151	107	2.8	107	88	7	448	45	15	16	22	1.85
7158854--7159144	110	2.6	110	86	9	425	44	16	16	22	1.86
7159182--7159482	111	2.6	113	79	10	360	27	16	14	40	1.88
7164366--7164400	16	2.2	16	100	0	70	34	5	40	20	1.76
7164611--7164966	116	3.0	119	95	3	639	52	4	0	42	1.26
7164837--7164877	13	3.2	12	80	12	55	58	0	0	41	0.98
7168495--7168608	60	1.9	60	85	3	158	36	11	43	7	1.70
7170790--7170917	20	6.4	20	73	7	89	35	9	13	42	1.76
7170998--7171029	14	2.3	14	100	0	64	31	46	15	6	1.71
7175711--7175742	14	2.3	14	100	0	64	31	46	15	6	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7176427--7176934	20	25.1	20	67	14	143	39	6	12	41	1.69
7176413--7176931	40	13.4	39	70	13	200	39	6	12	41	1.70
7176506--7176606	38	2.6	38	86	9	125	35	5	16	41	1.73
7176906--7176966	32	1.9	32	82	0	77	37	8	11	42	1.71
7176971--7177019	21	2.4	21	86	10	66	38	10	12	38	1.77
7177110--7177211	20	5.1	20	76	4	71	40	4	13	41	1.66
7177116--7177200	40	2.1	40	80	8	93	40	3	14	42	1.62
7179149--7179407	143	1.8	143	90	1	421	38	11	20	29	1.88
7180113--7180149	18	2.1	18	90	10	58	51	13	8	27	1.69
7189068--7189116	23	2.1	24	85	7	66	51	0	2	46	1.12
7189006--7189106	37	2.6	39	76	13	95	57	0	1	39	1.17
7204105--7204142	18	2.1	18	95	0	67	0	55	0	44	0.99
7204202--7204251	25	2.0	25	88	0	73	4	30	4	62	1.32
7206866--7206917	15	3.2	15	78	13	50	53	1	1	42	1.23
7206948--7206986	20	2.0	20	94	0	69	48	0	2	48	1.15
7207085--7207124	20	2.0	20	90	0	62	50	12	10	27	1.72
7207073--7207139	34	1.9	35	90	3	109	46	13	8	31	1.74
7207108--7207147	14	2.9	14	84	0	53	42	17	7	32	1.77
7224421--7224457	12	3.0	13	84	11	51	29	40	18	10	1.85
7226502--7226542	21	2.0	21	95	0	73	19	17	24	39	1.92
7232518--7232661	65	2.2	65	87	0	198	24	22	21	31	1.98
7232708--7232816	26	4.3	26	76	9	84	19	22	21	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7234628--7234706	25	3.2	24	72	13	63	30	21	27	20	1.98
7234640--7234760	26	4.8	26	72	12	83	31	23	25	19	1.98
7241207--7241242	18	2.0	18	88	0	54	36	5	11	47	1.63
7241931--7241978	23	2.1	22	81	11	53	27	10	4	58	1.49
7246229--7246262	17	2.0	17	100	0	68	64	0	23	11	1.26
7246752--7246809	27	2.1	27	100	0	116	37	18	15	27	1.92
7246966--7247013	25	2.0	25	87	4	71	18	20	20	39	1.92
7247073--7247167	25	3.8	25	70	19	81	22	26	18	32	1.97
7247185--7247255	24	2.9	24	78	16	74	19	23	23	32	1.98
7254257--7254299	21	2.0	21	86	4	59	46	4	2	46	1.36

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144