genome.fa.s11.2.7.7.80.10.50.1000.142.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  142  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43981619--43981662	21	2.1	21	91	0	70	36	15	11	36	1.84
43982012--43982245	44	5.4	41	73	11	155	26	25	16	31	1.96
43982002--43982201	44	4.6	42	75	10	163	27	24	17	31	1.97
43982039--43982512	44	10.8	43	72	8	276	26	24	18	30	1.98
43982484--43982816	88	3.8	88	81	5	323	23	24	23	28	1.99
43982563--43982794	44	5.3	44	64	6	110	25	25	23	25	2.00
43982169--43982587	132	3.2	132	99	0	829	25	24	20	30	1.99
43982843--43982972	44	3.0	44	71	4	118	22	25	25	26	2.00
43982692--43982964	148	1.8	148	88	0	420	21	27	24	26	1.99
43982816--43983297	88	5.5	88	86	1	599	22	25	24	26	2.00
43982580--43983052	236	2.0	235	85	1	642	23	26	22	27	2.00
43982523--43983140	324	1.9	324	98	0	1209	22	25	24	27	2.00
43989803--43989857	21	2.7	21	91	5	87	36	18	10	34	1.86
43992308--43992485	97	1.8	98	89	3	279	34	17	18	29	1.94
43992890--43992954	19	3.1	21	80	10	55	27	1	3	67	1.14
43992902--43992947	21	2.4	18	82	13	56	28	0	4	67	1.10
43992904--43992949	19	2.3	21	88	7	69	28	0	4	67	1.10
43992885--43992954	17	3.8	18	75	17	56	27	1	2	68	1.12
43995231--43996120	5	178.0	5	97	0	1694	40	0	19	39	1.56
43996827--43996861	17	2.0	17	88	5	52	65	0	0	34	0.93
44002022--44002112	48	2.1	41	82	15	103	25	25	5	43	1.75
44009395--44009592	69	2.8	70	81	1	200	33	25	19	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44009393--44009600	70	3.0	70	81	1	238	33	24	20	22	1.97
44010104--44010153	16	3.3	16	69	25	54	32	16	2	50	1.56
44010091--44010163	29	2.5	29	97	0	137	31	16	4	47	1.65
44010554--44010606	19	2.7	20	77	11	65	71	0	1	26	0.96
44011458--44011500	13	3.5	13	81	18	65	48	16	0	34	1.46
44011456--44011502	23	2.0	23	100	0	94	46	17	0	36	1.48
44011460--44011509	23	2.2	23	92	0	82	52	14	0	34	1.42
44013473--44013511	19	2.1	19	95	0	69	23	20	25	30	1.98
44014284--44014317	6	5.3	6	86	13	50	20	0	0	79	0.73
44021380--44021429	23	2.2	23	92	0	82	54	12	0	34	1.38
44045874--44045924	8	6.0	8	75	20	50	0	19	0	80	0.71
44045854--44045925	30	2.4	30	84	13	94	0	22	1	76	0.86
44047448--44047590	71	2.0	71	98	0	277	23	25	19	31	1.98
44050747--44050835	46	1.9	46	88	0	133	26	25	20	26	1.99
44050648--44051009	175	2.1	169	86	5	494	27	21	21	29	1.99
44064448--44064492	20	2.2	20	96	0	81	17	4	42	35	1.70
44070474--44070542	12	5.8	12	84	6	52	56	5	37	0	1.23
44070474--44070542	18	3.9	17	77	11	50	56	5	37	0	1.23
44070492--44070530	6	6.5	6	93	0	60	56	10	33	0	1.33
44075531--44075568	16	2.4	16	82	8	51	31	26	5	36	1.79
44076746--44076982	105	2.3	104	81	2	260	33	24	12	29	1.92
44080056--44080086	15	2.1	15	93	0	53	25	22	12	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44083206--44083252	24	2.0	23	84	12	60	29	14	4	51	1.62
44084133--44084190	17	3.4	16	78	19	64	56	0	0	43	0.99
44084130--44084190	5	12.6	5	71	25	51	57	0	0	42	0.98
44088350--44088507	43	3.7	43	79	7	169	30	27	17	25	1.97
44098927--44099002	29	2.6	29	81	10	91	36	19	7	35	1.81
44105194--44105261	31	2.2	30	82	7	82	32	17	14	35	1.91
44108935--44109260	108	3.0	108	98	0	625	23	4	21	50	1.66
44131019--44131048	16	1.9	15	93	6	51	43	0	6	50	1.28
44132834--44132877	22	2.0	22	86	0	61	25	22	29	22	1.99
44139562--44139591	7	4.3	7	100	0	60	56	0	0	43	0.99
44149425--44149458	13	2.6	13	85	0	50	38	8	0	52	1.33
44149653--44149701	20	2.7	18	77	22	57	51	4	2	42	1.32
44154869--44155129	75	3.4	73	81	8	263	37	29	18	14	1.91
44154812--44155120	38	7.9	38	77	10	225	36	29	18	15	1.92
44161319--44161407	37	2.5	36	89	7	130	33	29	10	26	1.89
44161595--44161751	41	3.8	41	83	5	174	22	29	19	29	1.98
44161636--44161768	41	3.2	40	81	8	151	23	29	20	27	1.99
44171855--44172397	44	12.9	42	71	12	341	28	20	23	27	1.99
44171860--44172310	124	3.6	124	96	1	787	28	20	23	28	1.99
44171907--44172257	80	4.3	80	71	13	293	27	20	23	28	1.99
44179152--44179245	9	10.6	9	73	14	70	27	5	1	65	1.20
44179151--44179245	26	3.6	25	71	22	70	27	5	1	66	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44179560--44179611	21	2.6	19	82	11	61	28	0	1	69	0.99
44179559--44179614	28	2.0	29	85	3	78	30	0	1	67	1.01
44181676--44181785	51	2.2	51	86	3	150	29	14	9	47	1.75
44182719--44182766	24	2.0	24	100	0	96	29	12	12	45	1.78
44183585--44183632	15	3.0	16	75	9	53	37	0	4	58	1.18
44189895--44189958	33	2.0	32	87	6	94	50	3	0	46	1.17
44193108--44193158	26	2.0	26	100	0	102	31	27	5	35	1.81
44196324--44196349	3	8.7	3	100	0	52	0	0	30	69	0.89
44201897--44201940	16	2.6	17	89	3	63	18	0	25	56	1.41
44201900--44201940	17	2.5	16	88	4	55	17	0	26	56	1.41
44202393--44202434	20	2.0	21	81	9	50	54	2	7	35	1.41
44208335--44208367	9	3.8	9	96	4	59	81	0	0	18	0.68
44216604--44216680	30	2.6	30	91	0	118	28	22	18	31	1.97
44218668--44218692	6	4.2	6	100	0	50	16	0	0	84	0.63
44220068--44220115	21	2.2	22	92	3	80	45	0	6	47	1.27
44220081--44220156	39	1.9	39	84	12	102	44	5	3	46	1.44
44224800--44224839	11	3.6	11	96	0	71	65	0	0	35	0.93
44224942--44224980	19	2.1	19	100	0	78	20	15	38	25	1.92
44226175--44226207	17	1.9	17	100	0	66	36	21	12	30	1.90
44231378--44231410	16	2.0	17	88	5	50	51	6	3	39	1.42
44232692--44232724	16	2.1	16	94	0	57	45	12	9	33	1.73
44237109--44237737	144	4.4	144	92	0	1035	35	13	20	30	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44237619--44237856	119	2.0	119	94	1	415	33	10	24	31	1.88
44239320--44239420	50	2.0	50	96	0	184	40	9	7	41	1.67
44241671--44241703	16	2.0	17	88	5	50	51	6	3	39	1.42
44242987--44243019	16	2.1	16	94	0	57	45	12	9	33	1.73
44247439--44247620	90	2.0	90	93	2	312	34	10	24	30	1.89
44247333--44247764	234	1.8	234	92	2	724	34	12	21	31	1.90
44247529--44247948	144	2.9	144	98	0	804	35	12	20	31	1.91
44248021--44248315	144	2.0	144	93	1	502	34	17	20	27	1.95
44249065--44249114	16	3.1	17	86	11	70	42	12	6	40	1.67
44250103--44250152	18	2.8	18	79	11	57	60	2	4	34	1.27
44252153--44252198	22	2.0	23	84	12	60	39	2	2	56	1.24
44252511--44252565	18	3.0	18	78	5	74	50	1	0	47	1.11
44252488--44252567	37	2.1	38	90	6	126	47	3	1	47	1.28
44258167--44258196	14	2.1	15	93	6	53	16	0	26	56	1.40
44258172--44258955	43	18.6	43	79	8	706	20	0	33	45	1.54
44258173--44258802	64	9.8	64	80	5	648	20	0	34	44	1.54
44258341--44258418	7	11.0	7	70	22	56	16	0	39	43	1.48
44258738--44258897	13	11.6	14	67	18	70	19	1	34	45	1.59
44258769--44258835	28	2.4	28	82	10	82	20	0	37	41	1.53
44258738--44258920	7	26.4	7	67	19	73	18	1	33	46	1.57
44258865--44258955	22	4.3	21	77	10	80	21	1	28	48	1.58
44258912--44258956	21	2.1	21	87	0	63	28	0	22	48	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44260229--44260254	7	3.7	7	100	0	52	57	15	0	26	1.38
44261489--44261532	11	3.8	12	80	19	58	43	0	31	25	1.55
44263419--44263443	12	2.1	12	100	0	50	56	0	32	12	1.36
44269627--44269714	42	2.1	43	85	6	117	29	26	15	28	1.96
44269639--44269729	42	2.2	41	82	9	112	30	26	15	27	1.96
44269660--44269865	96	2.2	94	81	8	226	30	24	16	28	1.97
44269691--44269865	48	3.7	47	80	5	199	30	23	17	28	1.97
44269691--44269865	96	1.8	96	85	2	244	30	23	17	28	1.97
44271907--44271943	18	2.0	19	94	5	67	43	13	10	32	1.79
44271927--44271957	14	2.2	14	94	0	53	38	19	9	32	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144