genome.fa.s11.2.7.7.80.10.50.1000.53.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr6
Parameters: 2 7 7 80 10 50 1000
Length:  44797108

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   

This is table  53  of  144  ( 17221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16488494--16488580	44	1.9	44	84	13	115	33	5	24	36	1.79
16488688--16488808	53	2.2	58	85	7	162	52	3	0	43	1.17
16488733--16488845	58	1.9	57	82	10	140	54	3	0	40	1.23
16490491--16490527	17	2.2	17	100	0	74	54	21	0	24	1.45
16490804--16490839	18	2.1	18	89	5	56	69	8	2	19	1.27
16491243--16491267	12	2.1	12	100	0	50	56	8	0	36	1.29
16493534--16493631	51	1.9	51	93	0	169	47	19	5	27	1.70
16494200--16494231	12	2.6	13	85	14	50	62	0	0	37	0.95
16494694--16494927	117	2.0	117	95	0	423	39	22	10	27	1.87
16495453--16495508	23	2.4	23	82	5	69	39	23	21	16	1.92
16496281--16496335	2	27.5	2	100	0	110	0	49	0	50	1.00
16502418--16502507	18	4.8	19	71	19	73	28	2	6	62	1.33
16502822--16502887	24	2.6	25	77	20	66	22	1	6	69	1.19
16504447--16504471	13	1.9	13	100	0	50	8	28	40	24	1.83
16522638--16522679	22	2.0	20	86	13	57	47	0	2	50	1.14
16523751--16523816	11	5.8	12	81	15	79	24	31	1	42	1.64
16523775--16523874	51	2.0	51	84	4	130	27	25	3	45	1.68
16525676--16525709	17	1.9	18	88	5	52	20	23	8	47	1.78
16526293--16526980	22	31.7	22	79	6	697	46	27	0	25	1.59
16526293--16526980	43	15.8	43	81	5	708	46	27	0	25	1.59
16526293--16526980	197	3.5	195	85	4	842	46	27	0	25	1.59
16526717--16526771	16	3.6	16	76	9	53	49	29	0	21	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16530134--16530445	125	2.5	125	90	1	466	29	24	16	29	1.97
16530646--16530723	40	2.0	40	86	0	111	21	30	28	19	1.97
16532623--16532665	12	3.6	12	83	0	59	27	37	6	27	1.83
16534027--16534199	72	2.4	72	83	6	226	55	13	5	25	1.59
16534625--16534690	18	3.7	18	81	0	87	39	15	10	34	1.82
16535397--16535439	20	2.2	20	100	0	86	48	9	4	37	1.56
16536807--16536831	11	2.3	11	100	0	50	52	28	12	8	1.66
16536836--16536884	20	2.5	19	77	6	53	65	6	12	16	1.45
16537960--16537997	7	5.4	7	100	0	76	15	0	0	84	0.63
16541126--16541161	17	2.1	17	89	0	54	27	0	2	69	1.02
16542405--16542446	22	2.0	22	86	13	61	30	9	2	57	1.44
16543518--16543560	20	2.0	22	91	8	72	60	2	2	34	1.22
16543521--16543565	21	2.2	20	84	11	56	62	4	2	31	1.27
16544249--16544279	4	7.8	4	92	0	53	25	51	0	22	1.48
16550569--16550603	6	5.5	6	93	6	52	82	0	2	14	0.77
16551872--16551937	26	2.6	26	97	2	125	65	16	10	7	1.46
16565845--16565876	7	4.6	7	96	0	55	18	31	9	40	1.83
16565845--16565881	14	2.6	14	86	0	56	21	29	10	37	1.88
16565807--16565978	58	3.0	58	99	0	335	26	25	15	32	1.95
16565903--16565934	7	4.6	7	96	0	55	18	31	9	40	1.83
16565903--16565939	14	2.6	14	86	0	56	21	29	10	37	1.88
16569671--16569855	79	2.3	82	83	7	229	24	27	22	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16569652--16569855	40	5.1	40	81	8	229	24	27	22	25	2.00
16572019--16572070	21	2.5	20	71	3	50	51	1	1	44	1.23
16577094--16577126	11	3.0	11	95	0	57	30	0	0	69	0.88
16578262--16578357	33	2.9	33	96	0	174	47	17	32	2	1.59
16579012--16579051	7	5.4	7	85	11	53	40	0	2	57	1.12
16579013--16579063	14	3.5	14	81	10	50	43	0	3	52	1.19
16584218--16584251	17	2.0	17	88	0	50	64	0	0	35	0.94
16584497--16584545	25	2.0	25	100	0	98	40	12	6	40	1.67
16584836--16584876	17	2.5	16	88	4	55	53	0	0	46	1.00
16584841--16584887	16	2.8	17	83	6	60	55	0	0	44	0.99
16585624--16585685	29	2.1	30	81	3	72	22	11	4	61	1.48
16585667--16585701	17	2.1	17	88	0	52	22	2	8	65	1.34
16590234--16590264	16	1.9	16	100	0	62	29	0	32	38	1.57
16590483--16590537	15	3.4	16	80	16	53	50	1	0	47	1.11
16590503--16590537	18	2.0	17	88	5	52	54	0	0	45	0.99
16590623--16590657	18	2.0	17	88	5	52	54	0	0	45	0.99
16590486--16590897	120	3.4	120	94	2	697	48	4	2	43	1.37
16590743--16590777	18	2.0	17	88	5	52	54	0	0	45	0.99
16590858--16590896	17	2.5	15	80	15	51	51	0	5	43	1.24
16590863--16590896	17	2.0	17	94	0	59	50	0	5	44	1.26
16590913--16591121	92	2.3	91	84	6	244	46	4	3	44	1.41
16597049--16597083	17	2.0	18	88	5	54	45	5	2	45	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16604025--16604081	25	2.3	25	93	0	96	42	17	21	19	1.90
16605858--16605932	36	2.1	37	97	2	143	26	20	5	48	1.71
16614757--16614851	33	3.1	29	69	20	77	51	10	17	20	1.74
16614739--16614933	60	3.2	60	86	3	239	47	12	16	22	1.81
16615921--16615999	30	2.7	28	74	14	70	43	1	11	44	1.48
16616294--16616336	22	2.0	22	81	9	52	41	9	2	46	1.48
16626321--16626405	31	2.8	30	80	5	91	35	11	12	40	1.80
16627150--16627205	18	3.2	17	77	10	60	46	1	26	25	1.63
16627150--16627199	16	2.9	17	78	21	52	44	2	28	26	1.65
16631977--16632022	20	2.3	20	85	7	58	45	0	0	54	0.99
16638757--16638797	16	2.6	16	88	0	64	41	0	0	58	0.98
16639039--16639070	12	2.6	13	85	14	50	34	0	25	40	1.56
16639882--16639961	25	3.3	25	78	13	87	15	23	20	41	1.89
16639894--16639966	22	3.1	24	80	9	78	15	21	19	43	1.87
16649940--16649987	17	2.8	17	83	0	60	41	2	8	47	1.45
16653437--16653483	17	2.8	17	80	6	51	34	2	2	61	1.20
16653643--16653712	29	2.4	29	80	7	70	30	8	11	50	1.68
16660834--16660891	12	4.8	12	76	0	53	68	18	3	8	1.30
16661343--16661394	13	3.8	13	72	22	52	59	0	5	34	1.21
16661787--16661936	78	1.9	79	87	4	223	47	8	12	32	1.70
16662828--16663054	103	2.3	99	83	7	280	25	10	18	45	1.81
16675470--16675541	31	2.4	31	86	4	94	44	1	0	54	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16679657--16679719	4	15.8	4	100	0	126	23	0	25	50	1.49
16680828--16681309	159	3.0	158	83	3	644	36	13	25	24	1.91
16682939--16683140	72	2.8	71	84	1	269	20	31	26	22	1.98
16686813--16686872	9	6.7	9	82	0	75	26	11	20	41	1.86
16686813--16686872	27	2.2	27	96	0	111	26	11	20	41	1.86
16689217--16689305	40	2.2	41	84	6	110	34	22	22	20	1.96
16689233--16689330	40	2.4	42	79	6	103	42	23	17	16	1.88
16689254--16689366	40	2.8	41	76	4	115	39	24	18	16	1.91
16689344--16689691	114	3.1	114	89	3	531	27	23	21	27	1.99
16689784--16689870	41	2.1	41	84	0	111	17	28	31	22	1.97
16691359--16691390	16	2.0	16	93	0	55	40	25	3	31	1.71
16692534--16692587	27	2.0	28	96	3	101	37	3	3	55	1.35
16692543--16692602	27	2.2	27	84	0	75	41	5	1	51	1.33
16692975--16693014	14	2.9	14	88	0	53	52	5	2	40	1.37
16697104--16697199	31	3.1	31	95	3	174	31	9	13	45	1.75
16698893--16698919	14	1.9	14	100	0	54	14	0	33	51	1.43
16698988--16699338	43	8.2	42	90	2	504	21	20	27	30	1.98
16698988--16699338	86	4.1	86	93	0	567	21	20	27	30	1.98
16698988--16699338	129	2.7	129	91	0	569	21	20	27	30	1.98
16698984--16699402	129	3.2	128	85	4	369	23	20	26	28	1.99
16699472--16699513	21	2.0	21	86	4	59	42	30	14	11	1.81
16699958--16700025	29	2.4	28	80	4	73	38	26	14	20	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16702335--16702385	24	2.2	24	85	3	68	45	7	9	37	1.67
16703490--16703576	28	3.2	26	78	19	88	9	9	2	79	1.02
16703501--16703590	14	6.2	15	71	21	75	8	8	2	80	1.00
16703517--16703602	17	5.2	17	73	16	65	10	8	1	80	0.96
16703596--16703680	22	3.8	24	76	14	76	38	0	2	58	1.11
16703630--16703717	33	2.6	34	75	5	90	40	0	1	57	1.06
16703715--16703760	23	2.0	23	83	8	58	54	4	6	34	1.46
16703754--16703782	15	1.9	15	100	0	58	44	0	0	55	0.99
16703754--16703886	16	8.2	15	67	23	56	52	3	0	43	1.21
16703902--16703963	20	3.0	20	83	6	81	62	1	0	35	1.05

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144